Wall clock time and date at job start Tue Mar 31 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 2 1 6 6 C 1.46504 * 120.00381 * 269.99975 * 5 4 2 7 7 C 1.50704 * 109.46773 * 90.00257 * 6 5 4 8 8 H 1.07998 * 119.99721 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99850 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99692 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99728 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47360 * 60.00339 * 11 9 7 13 13 H 1.48498 * 109.46962 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47440 * 300.00071 * 11 9 7 15 15 C 1.34781 * 119.99786 * 90.00416 * 5 4 2 16 16 O 1.21615 * 119.99874 * 179.97438 * 15 5 4 17 17 C 1.47096 * 119.99881 * 359.97438 * 15 5 4 18 18 C 1.33004 * 119.99877 * 179.97438 * 17 15 5 19 19 C 1.50698 * 120.00012 * 179.97438 * 18 17 15 20 20 H 1.09005 * 110.45829 * 357.40497 * 19 18 17 21 21 C 1.54506 * 110.50867 * 120.00433 * 19 18 17 22 22 C 1.54476 * 104.06661 * 118.64707 * 21 19 18 23 23 O 1.44435 * 104.80048 * 23.97595 * 22 21 19 24 24 C 1.44422 * 105.27499 * 319.49461 * 23 22 21 25 25 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 26 26 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 27 27 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 31 31 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 34 34 H 1.08992 * 109.47334 * 209.99920 * 6 5 4 35 35 H 1.08994 * 109.46680 * 330.00544 * 6 5 4 36 36 H 0.96996 * 119.99637 * 179.97438 * 10 9 7 37 37 H 1.07994 * 120.00209 * 0.02562 * 17 15 5 38 38 H 1.07994 * 119.99914 * 0.02562 * 18 17 15 39 39 H 1.09004 * 110.51089 * 237.29447 * 21 19 18 40 40 H 1.08996 * 110.51422 * 359.97438 * 21 19 18 41 41 H 1.08994 * 110.37964 * 142.80921 * 22 21 19 42 42 H 1.09000 * 110.37331 * 265.15436 * 22 21 19 43 43 H 1.09012 * 110.36993 * 281.67929 * 24 23 22 44 44 H 1.08998 * 110.37397 * 159.34180 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5049 -0.7207 1.2496 6 6 4.2381 -1.8191 0.6153 7 6 4.4895 -1.4850 -0.8326 8 1 4.1386 -0.5481 -1.2394 9 6 5.1674 -2.3756 -1.6379 10 7 5.5941 -3.5167 -1.1425 11 14 5.4783 -1.9619 -3.4327 12 1 6.2806 -0.7154 -3.5216 13 1 6.2204 -3.0757 -4.0760 14 1 4.1807 -1.7659 -4.1276 15 6 4.1783 0.2904 1.8335 16 8 5.3944 0.2906 1.8342 17 6 3.4422 1.3935 2.4700 18 6 4.1067 2.3909 3.0467 19 6 3.3526 3.5213 3.6982 20 1 2.2787 3.3886 3.5668 21 6 3.7068 3.6141 5.1993 22 6 4.3342 5.0175 5.3510 23 8 3.7995 5.7819 4.2483 24 6 3.8078 4.8797 3.1205 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6765 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2493 34 1 5.1904 -1.9628 1.1256 35 1 3.6493 -2.7340 0.6802 36 1 6.0707 -4.1433 -1.7091 37 1 2.3623 1.3930 2.4698 38 1 5.1866 2.3911 3.0473 39 1 2.8078 3.5296 5.8098 40 1 4.4270 2.8421 5.4702 41 1 4.0397 5.4643 6.3005 42 1 5.4202 4.9574 5.2795 43 1 4.8132 4.7984 2.7071 44 1 3.1089 5.2206 2.3567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:29 Heat of formation + Delta-G solvation = -77.021455 kcal Electronic energy + Delta-G solvation = -22827.252733 eV Core-core repulsion = 19551.671533 eV Total energy + Delta-G solvation = -3275.581200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74416 -39.15112 -36.25646 -34.56880 -33.45872 -32.25601 -30.91976 -29.10334 -27.51205 -26.89556 -25.60697 -23.84939 -22.94971 -21.76955 -20.17657 -19.96607 -18.09876 -16.98680 -16.53416 -16.45097 -15.67793 -15.48197 -15.13811 -14.61052 -14.42950 -14.18300 -13.73818 -13.35606 -13.03022 -12.97493 -12.43098 -12.26039 -12.21727 -11.95188 -11.77540 -11.69586 -11.53465 -11.44712 -11.21416 -11.12382 -10.84597 -10.75746 -10.58913 -10.51992 -10.27546 -10.00605 -9.99900 -9.53841 -9.09969 -8.94048 -8.41384 -7.61943 -6.02659 -4.06608 1.70170 3.32029 3.36639 3.39555 3.76193 3.89375 4.05963 4.45089 4.48482 4.57400 4.74983 4.90634 5.05254 5.10730 5.18859 5.26745 5.29919 5.31890 5.45068 5.49203 5.54832 5.58678 5.64742 5.71094 5.75617 5.83036 5.89398 5.98229 6.04943 6.13395 6.26685 6.39829 6.50487 6.56179 6.60536 6.67226 6.83573 7.11930 7.45738 7.58104 7.94115 8.25459 8.44478 8.92097 9.11595 9.58025 11.05521 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019223 B = 0.004326 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.208416 B = 6470.917835 C = 6966.011107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.146 4.146 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.246 3.754 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.535 3.465 16 O -0.546 6.546 17 C -0.189 4.189 18 C -0.093 4.093 19 C -0.094 4.094 20 H 0.089 0.911 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.052 3.948 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 12.511 9.986 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.203 4.203 4 C -0.004 4.004 5 N -0.320 5.320 6 C 0.126 3.874 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.323 3.677 16 O -0.426 6.426 17 C -0.209 4.209 18 C -0.113 4.113 19 C -0.113 4.113 20 H 0.107 0.893 21 C -0.185 4.185 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.025 4.025 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.985 12.504 9.927 18.320 hybrid contribution 0.149 -0.203 -1.190 1.216 sum -8.836 12.301 8.737 17.485 Atomic orbital electron populations 1.21773 0.95568 1.01479 1.01144 1.21585 0.94644 0.96845 1.00746 1.21983 1.02033 0.95838 1.00470 1.21524 0.81209 1.00902 0.96801 1.48128 1.05759 1.23763 1.54346 1.19296 0.92455 0.83052 0.92563 1.21402 1.36234 1.03781 0.94601 0.92289 1.24924 0.95451 0.94983 0.98718 1.69921 1.38494 1.08810 1.36267 0.86606 0.78363 0.77988 0.84761 1.20235 1.21223 1.20269 1.18341 0.87348 0.82612 0.79390 1.90755 1.13662 1.77774 1.60414 1.23161 1.00423 0.96335 1.01021 1.23420 1.00572 0.93169 0.94157 1.21713 1.00564 0.94233 0.94806 0.89253 1.22994 1.02081 0.98038 0.95396 1.23449 0.98066 0.90761 0.91035 1.89114 1.84818 1.36040 1.19696 1.23490 1.01763 0.87507 0.89701 0.93253 0.92907 0.92723 0.89068 0.91945 0.93357 0.93259 0.91852 0.90740 0.93924 0.95081 0.92731 0.85648 0.85540 0.90360 0.89834 0.89129 0.92073 0.91545 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.12 -1.82 3.16 -90.62 -0.29 -2.10 16 3 C -0.15 -2.16 7.60 37.16 0.28 -1.87 16 4 C 0.12 1.93 5.01 -4.04 -0.02 1.91 16 5 N -0.59 -12.36 2.26 -176.46 -0.40 -12.76 16 6 C 0.25 6.37 5.20 -5.19 -0.03 6.34 16 7 C -0.52 -14.53 8.92 -34.44 -0.31 -14.84 16 8 H 0.06 1.64 7.42 -52.49 -0.39 1.25 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 11 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.53 11.14 6.22 -12.67 -0.08 11.06 16 16 O -0.55 -13.86 15.80 5.26 0.08 -13.77 16 17 C -0.19 -2.86 6.67 -37.81 -0.25 -3.11 16 18 C -0.09 -1.25 8.09 -36.12 -0.29 -1.54 16 19 C -0.09 -0.97 3.45 -90.21 -0.31 -1.28 16 20 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 21 C -0.15 -1.32 6.72 -25.17 -0.17 -1.49 16 22 C 0.04 0.39 7.63 37.93 0.29 0.68 16 23 O -0.38 -4.35 11.65 -35.23 -0.41 -4.76 16 24 C 0.05 0.55 7.17 37.93 0.27 0.82 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.70 7.26 -51.93 -0.38 1.33 16 29 H 0.06 1.13 6.01 -51.93 -0.31 0.81 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.61 6.20 -51.93 -0.32 0.28 16 32 H 0.06 0.84 6.09 -51.93 -0.32 0.52 16 33 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 1.58 4.46 -52.49 -0.23 1.35 16 38 H 0.13 1.90 7.49 -52.49 -0.39 1.51 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.71 7.86 -51.92 -0.41 0.30 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -32.61 349.41 -7.69 -40.29 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.28 Total: -0.14 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.66 Total: -5.12 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.34 Total: -38.59 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.33 Total: -18.54 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.61 -7.69 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.730 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds