Wall clock time and date at job start Tue Mar 31 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47066 * 2 1 4 4 C 1.52999 * 109.47408 * 119.99881 * 2 1 3 5 5 N 1.46503 * 109.46797 * 65.00298 * 4 2 1 6 6 C 1.46501 * 120.00017 * 269.99706 * 5 4 2 7 7 C 1.50700 * 109.47272 * 270.00455 * 6 5 4 8 8 H 1.07998 * 119.99922 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00154 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99470 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47287 * 119.99821 * 11 9 7 14 14 H 1.48494 * 109.47268 * 239.99648 * 11 9 7 15 15 C 1.34780 * 119.99710 * 90.00484 * 5 4 2 16 16 O 1.21624 * 119.99574 * 180.02562 * 15 5 4 17 17 C 1.47094 * 120.00420 * 359.97438 * 15 5 4 18 18 C 1.32993 * 120.00049 * 180.02562 * 17 15 5 19 19 C 1.50706 * 119.99953 * 180.02562 * 18 17 15 20 20 H 1.09003 * 110.45418 * 2.60040 * 19 18 17 21 21 C 1.54505 * 110.50853 * 240.00189 * 19 18 17 22 22 C 1.54487 * 104.06179 * 241.21637 * 21 19 18 23 23 O 1.44421 * 104.79872 * 336.02098 * 22 21 19 24 24 C 1.44425 * 105.27967 * 40.51065 * 23 22 21 25 25 H 1.08996 * 109.47404 * 299.99614 * 1 2 3 26 26 H 1.09000 * 109.47285 * 60.00287 * 1 2 3 27 27 H 1.09002 * 109.46754 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47404 * 240.00386 * 2 1 3 29 29 H 1.08992 * 109.47439 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47318 * 300.00583 * 3 2 1 31 31 H 1.09010 * 109.46902 * 59.99866 * 3 2 1 32 32 H 1.09000 * 109.47328 * 305.00082 * 4 2 1 33 33 H 1.08997 * 109.47369 * 185.00108 * 4 2 1 34 34 H 1.08999 * 109.46819 * 30.00513 * 6 5 4 35 35 H 1.08996 * 109.46899 * 150.00104 * 6 5 4 36 36 H 0.97003 * 119.99211 * 179.97438 * 10 9 7 37 37 H 1.08004 * 119.99657 * 0.02562 * 17 15 5 38 38 H 1.07991 * 120.00500 * 359.97438 * 18 17 15 39 39 H 1.09003 * 110.51737 * 122.57556 * 21 19 18 40 40 H 1.09000 * 110.51297 * 359.85985 * 21 19 18 41 41 H 1.08997 * 110.37332 * 94.85398 * 22 21 19 42 42 H 1.09004 * 110.37288 * 217.19057 * 22 21 19 43 43 H 1.08999 * 110.37470 * 200.65665 * 24 23 22 44 44 H 1.09004 * 110.36954 * 78.31941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3747 -2.5660 1.7612 7 6 0.5718 -2.9409 3.2075 8 1 1.5510 -2.8645 3.6565 9 6 -0.4978 -3.3823 3.9572 10 7 -1.6902 -3.4758 3.4102 11 14 -0.2534 -3.8477 5.7496 12 1 1.1714 -3.6553 6.1212 13 1 -1.1091 -2.9872 6.6056 14 1 -0.6282 -5.2709 5.9471 15 6 2.4717 -3.0330 0.6115 16 8 2.1498 -4.2048 0.5623 17 6 3.7546 -2.5980 0.0381 18 6 4.5626 -3.4862 -0.5337 19 6 5.8772 -3.0406 -1.1206 20 1 6.0282 -1.9745 -0.9512 21 6 5.9323 -3.3618 -2.6309 22 6 7.1268 -4.3322 -2.7650 23 8 7.9609 -4.0508 -1.6201 24 6 7.0449 -3.8547 -0.5208 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8901 32 1 1.6054 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2951 34 1 -0.3483 -1.7533 1.6918 35 1 0.0044 -3.4298 1.2092 36 1 -2.4427 -3.7867 3.9376 37 1 4.0402 -1.5573 0.0814 38 1 4.2772 -4.5268 -0.5766 39 1 6.1106 -2.4545 -3.2082 40 1 5.0097 -3.8450 -2.9525 41 1 6.7812 -5.3655 -2.7380 42 1 7.6720 -4.1376 -3.6887 43 1 7.5271 -3.2935 0.2795 44 1 6.6867 -4.8150 -0.1496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:32 Heat of formation + Delta-G solvation = -80.088013 kcal Electronic energy + Delta-G solvation = -22476.246037 eV Core-core repulsion = 19200.531861 eV Total energy + Delta-G solvation = -3275.714176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70630 -39.07032 -36.40508 -34.49951 -33.50014 -32.28775 -30.90922 -29.11618 -27.68433 -26.83009 -25.49941 -23.91718 -22.95169 -21.75609 -20.27674 -19.89806 -18.27307 -16.80660 -16.56590 -16.43860 -15.81050 -15.48588 -15.21683 -14.51752 -14.42596 -14.23762 -13.73589 -13.31893 -13.17674 -12.99292 -12.48054 -12.22039 -12.08646 -11.98956 -11.93570 -11.74024 -11.52691 -11.39364 -11.28420 -10.98653 -10.92740 -10.84664 -10.65187 -10.47903 -10.25926 -10.11751 -10.01490 -9.56754 -9.15979 -8.95345 -8.41624 -7.60095 -6.03388 -4.07570 1.68114 3.29923 3.37643 3.41704 3.75316 3.93345 4.01250 4.44861 4.47324 4.57088 4.73376 4.89541 5.03821 5.08416 5.13735 5.18030 5.25526 5.30681 5.38544 5.47788 5.52667 5.54320 5.63734 5.72696 5.74952 5.83704 5.87879 5.89128 6.10315 6.16749 6.18803 6.31217 6.48045 6.53776 6.59672 6.60259 6.70406 7.15015 7.46003 7.58061 7.93636 8.25707 8.45244 8.91820 9.11831 9.57356 11.04488 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.004423 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.006056 B = 6328.912925 C = 7548.992786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.588 5.588 6 C 0.241 3.759 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.532 3.468 16 O -0.546 6.546 17 C -0.191 4.191 18 C -0.087 4.087 19 C -0.096 4.096 20 H 0.090 0.910 21 C -0.147 4.147 22 C 0.044 3.956 23 O -0.378 6.378 24 C 0.052 3.948 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.443 6.836 -11.031 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.318 5.318 6 C 0.122 3.878 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.320 3.680 16 O -0.426 6.426 17 C -0.212 4.212 18 C -0.107 4.107 19 C -0.114 4.114 20 H 0.108 0.892 21 C -0.185 4.185 22 C -0.033 4.033 23 O -0.297 6.297 24 C -0.025 4.025 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.273 6.191 -10.975 18.302 hybrid contribution -0.302 -0.123 1.081 1.129 sum 12.971 6.068 -9.895 17.406 Atomic orbital electron populations 1.21925 0.94633 1.03067 1.00945 1.21595 0.97114 0.95761 0.98889 1.21781 1.00468 0.96066 1.01780 1.21572 0.99108 0.82322 0.97935 1.48114 1.21650 1.06290 1.55707 1.19416 0.78684 0.96400 0.93268 1.21496 0.95093 1.44237 0.95531 0.92484 1.24924 0.95061 0.95448 0.98675 1.69947 0.99818 1.47132 1.36505 0.86461 0.78148 0.78233 0.84699 1.19829 1.20985 1.20907 1.18389 0.84478 0.85897 0.79201 1.90752 1.75321 1.17354 1.59172 1.23024 0.96074 1.00158 1.01901 1.23445 0.92971 1.00348 0.93960 1.21730 0.93406 1.01282 0.95022 0.89202 1.22996 0.99596 1.00574 0.95327 1.23453 0.91330 0.98408 0.90128 1.89113 1.30051 1.91769 1.18719 1.23490 0.89138 0.99543 0.90302 0.92509 0.93655 0.91283 0.91523 0.92990 0.92853 0.92487 0.89982 0.91585 0.94092 0.94074 0.92825 0.85988 0.85470 0.90331 0.89838 0.92058 0.89109 0.88699 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.18 37.16 0.30 -1.96 16 2 C -0.11 -1.56 3.13 -90.62 -0.28 -1.85 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.12 1.86 4.61 -4.04 -0.02 1.84 16 5 N -0.59 -12.38 2.28 -176.46 -0.40 -12.78 16 6 C 0.24 6.24 4.23 -5.19 -0.02 6.22 16 7 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.53 11.22 7.62 -12.67 -0.10 11.12 16 16 O -0.55 -13.94 15.80 5.26 0.08 -13.86 16 17 C -0.19 -2.92 8.83 -37.81 -0.33 -3.26 16 18 C -0.09 -1.18 8.10 -36.12 -0.29 -1.47 16 19 C -0.10 -0.99 3.44 -90.21 -0.31 -1.30 16 20 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 21 C -0.15 -1.32 6.73 -25.16 -0.17 -1.49 16 22 C 0.04 0.39 7.63 37.94 0.29 0.68 16 23 O -0.38 -4.34 11.65 -35.23 -0.41 -4.76 16 24 C 0.05 0.54 7.18 37.93 0.27 0.82 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.26 5.89 -51.93 -0.31 0.95 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.07 0.91 6.09 -51.93 -0.32 0.59 16 34 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.12 1.53 6.06 -52.48 -0.32 1.21 16 38 H 0.13 1.91 7.49 -52.49 -0.39 1.52 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -33.00 355.61 -7.83 -40.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.44 Total: -0.53 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.74 Total: -5.42 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.33 Total: -38.58 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.33 Total: -18.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.00 -7.83 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.249 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds