Wall clock time and date at job start Tue Mar 31 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47034 * 2 1 4 4 C 1.53003 * 109.47266 * 119.99889 * 2 1 3 5 5 N 1.46500 * 109.47175 * 174.99671 * 4 2 1 6 6 C 1.46502 * 119.99341 * 90.00053 * 5 4 2 7 7 C 1.50701 * 109.46995 * 90.00343 * 6 5 4 8 8 H 1.07999 * 119.99953 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99810 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00148 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99814 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47202 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47341 * 120.00141 * 11 9 7 14 14 H 1.48500 * 109.47481 * 239.99888 * 11 9 7 15 15 C 1.34768 * 120.00148 * 270.00188 * 5 4 2 16 16 O 1.21615 * 119.99999 * 180.02562 * 15 5 4 17 17 C 1.47105 * 120.00375 * 359.97438 * 15 5 4 18 18 C 1.32990 * 120.00114 * 186.21190 * 17 15 5 19 19 C 1.50697 * 120.00074 * 16.36622 * 18 17 15 20 20 H 1.08998 * 110.75399 * 6.93323 * 19 18 17 21 21 C 1.55304 * 110.84401 * 130.62771 * 19 18 17 22 22 C 1.54944 * 100.94310 * 152.32444 * 21 19 18 23 23 O 1.43652 * 105.13658 * 323.55488 * 22 21 19 24 24 C 1.43230 * 109.96711 * 24.42659 * 23 22 21 25 25 H 1.09002 * 109.47251 * 299.99839 * 1 2 3 26 26 H 1.08999 * 109.47382 * 60.00276 * 1 2 3 27 27 H 1.09002 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46853 * 239.99495 * 2 1 3 29 29 H 1.09008 * 109.47109 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47436 * 299.99825 * 3 2 1 31 31 H 1.09001 * 109.47713 * 60.00022 * 3 2 1 32 32 H 1.09008 * 109.46960 * 54.99778 * 4 2 1 33 33 H 1.09003 * 109.46960 * 295.00315 * 4 2 1 34 34 H 1.08992 * 109.47724 * 329.99738 * 6 5 4 35 35 H 1.08998 * 109.46820 * 209.99554 * 6 5 4 36 36 H 0.97008 * 120.00028 * 179.97438 * 10 9 7 37 37 H 1.07996 * 119.99271 * 6.20894 * 17 15 5 38 38 H 1.08004 * 119.99377 * 196.37471 * 18 17 15 39 39 H 1.09007 * 111.12306 * 270.24075 * 21 19 18 40 40 H 1.08997 * 111.12933 * 34.40652 * 21 19 18 41 41 H 1.08996 * 110.31180 * 204.63694 * 22 21 19 42 42 H 1.09004 * 110.31268 * 82.47008 * 22 21 19 43 43 H 1.09007 * 109.83123 * 238.77607 * 24 23 22 44 44 H 1.09000 * 109.91100 * 117.85075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.3343 0.2341 1.7612 7 6 4.6221 -0.0767 3.2075 8 1 4.2232 -0.9741 3.6567 9 6 5.3948 0.7848 3.9571 10 7 5.8810 1.8773 3.4099 11 14 5.7509 0.3999 5.7500 12 1 5.0940 -0.8789 6.1218 13 1 7.2176 0.2784 5.9483 14 1 5.2249 1.4941 6.6052 15 6 4.0757 -1.8987 0.6116 16 8 5.2877 -1.9862 0.5632 17 6 3.2380 -2.9638 0.0390 18 6 3.8008 -4.0776 -0.4208 19 6 5.2168 -4.4208 -0.0359 20 1 5.5927 -3.7248 0.7140 21 6 5.3128 -5.8870 0.4670 22 6 6.7804 -6.2268 0.1043 23 8 7.0247 -5.5532 -1.1407 24 6 6.1345 -4.4395 -1.2771 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.8091 1.1866 1.6918 35 1 5.2722 0.2952 1.2092 36 1 6.4243 2.4836 3.9375 37 1 2.1661 -2.8411 -0.0078 38 1 3.2429 -4.7360 -1.0701 39 1 5.1508 -5.9445 1.5435 40 1 4.6164 -6.5324 -0.0682 41 1 6.9004 -7.3032 -0.0179 42 1 7.4563 -5.8551 0.8745 43 1 5.5337 -4.5546 -2.1794 44 1 6.7052 -3.5123 -1.3290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822809049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:34 Heat of formation + Delta-G solvation = -87.346693 kcal Electronic energy + Delta-G solvation = -22967.857080 eV Core-core repulsion = 19691.828145 eV Total energy + Delta-G solvation = -3276.028936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12831 -40.09889 -37.88683 -35.62191 -34.98644 -34.11143 -31.98935 -30.23135 -29.33008 -27.96655 -26.89846 -25.55825 -23.64091 -22.91234 -21.80223 -21.28109 -19.40111 -18.67727 -18.09718 -17.54062 -17.20832 -16.61168 -16.25491 -15.95401 -15.72088 -15.29065 -14.88324 -14.63877 -14.36351 -14.20215 -14.06083 -13.81425 -13.56324 -13.42908 -13.01485 -12.96387 -12.74466 -12.67680 -12.62238 -12.43569 -12.20407 -12.12260 -12.04809 -11.80864 -11.75445 -11.52996 -11.45991 -10.63567 -10.56566 -10.35801 -9.98377 -9.29503 -8.22069 -6.36762 0.43981 1.33490 1.35850 1.47419 2.29866 2.48332 2.51874 2.95143 3.06754 3.65414 3.72497 3.84754 3.99824 4.05405 4.07600 4.23699 4.26864 4.34043 4.46077 4.54585 4.67012 4.70691 4.75357 4.83199 4.85058 4.92390 4.94349 5.02470 5.05024 5.06969 5.14082 5.21798 5.28198 5.30999 5.33357 5.47172 5.51761 5.60936 5.70297 5.92125 6.01906 6.09482 6.72050 6.87825 7.29269 7.55591 8.84246 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.006113 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.335934 B = 4579.091400 C = 6414.423606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C -0.148 4.148 4 C 0.111 3.889 5 N -0.595 5.595 6 C 0.261 3.739 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.964 3.036 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.517 3.483 16 O -0.588 6.588 17 C -0.216 4.216 18 C -0.045 4.045 19 C -0.135 4.135 20 H 0.094 0.906 21 C -0.136 4.136 22 C 0.045 3.955 23 O -0.408 6.408 24 C 0.071 3.929 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.033 0.967 35 H -0.010 1.010 36 H 0.266 0.734 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.124 -12.852 -7.952 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.205 4.205 4 C -0.012 4.012 5 N -0.323 5.323 6 C 0.140 3.860 7 C -0.578 4.578 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.569 5.569 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.310 3.690 16 O -0.472 6.472 17 C -0.236 4.236 18 C -0.064 4.064 19 C -0.153 4.153 20 H 0.112 0.888 21 C -0.174 4.174 22 C -0.031 4.031 23 O -0.328 6.328 24 C -0.006 4.006 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.270 -12.746 -8.060 18.826 hybrid contribution 0.792 0.807 1.251 1.687 sum -10.478 -11.938 -6.809 17.282 Atomic orbital electron populations 1.21727 0.92073 1.03089 1.02422 1.21539 0.97605 0.95735 0.97684 1.21895 0.99944 0.97026 1.01615 1.21864 0.78525 1.02134 0.98663 1.48135 1.07786 1.21171 1.55251 1.18800 0.89349 0.86076 0.91774 1.21760 1.32103 1.07139 0.96771 0.93134 1.25825 0.95216 0.94780 1.03304 1.70060 1.35495 1.12993 1.38311 0.85422 0.77820 0.78577 0.79331 1.19102 1.20908 1.19381 1.19462 0.87939 0.83601 0.78037 1.90605 1.16953 1.78416 1.61193 1.22929 1.00999 0.94711 1.04979 1.23747 0.94538 0.95326 0.92804 1.22509 0.94727 0.98792 0.99253 0.88803 1.23310 0.97101 0.94146 1.02795 1.23556 0.95722 0.98454 0.85387 1.88319 1.60350 1.44141 1.39955 1.22958 0.91059 0.88413 0.98156 0.92589 0.91539 0.90630 0.90985 0.95398 0.91509 0.93299 0.88175 0.91447 0.94915 0.99139 0.92513 0.81846 0.81170 0.89638 0.87592 0.87011 0.93458 0.89554 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.19 71.98 0.66 -1.72 16 2 C -0.11 -2.71 3.13 -10.79 -0.03 -2.74 16 3 C -0.15 -4.53 8.18 71.98 0.59 -3.94 16 4 C 0.11 3.41 4.57 86.38 0.40 3.81 16 5 N -0.59 -25.23 2.28 -830.43 -1.89 -27.13 16 6 C 0.26 14.20 4.23 85.63 0.36 14.56 16 7 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 11 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 C 0.52 21.46 7.44 86.57 0.64 22.10 16 16 O -0.59 -29.85 12.86 -4.08 -0.05 -29.91 16 17 C -0.22 -5.95 9.12 23.43 0.21 -5.74 16 18 C -0.04 -1.05 8.74 24.52 0.21 -0.83 16 19 C -0.13 -3.97 2.49 -10.28 -0.03 -3.99 16 20 H 0.09 3.81 4.94 -7.71 -0.04 3.77 16 21 C -0.14 -2.98 6.60 32.05 0.21 -2.77 16 22 C 0.04 1.08 7.78 72.65 0.56 1.64 16 23 O -0.41 -12.48 11.36 -148.98 -1.69 -14.17 16 24 C 0.07 2.14 7.39 72.45 0.54 2.68 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.03 1.06 5.89 -2.38 -0.01 1.05 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 2.39 6.18 -2.38 -0.01 2.38 16 33 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.03 1.80 5.98 -2.39 -0.01 1.79 16 35 H -0.01 -0.61 7.42 -2.39 -0.02 -0.62 16 36 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 37 H 0.16 3.20 6.34 -2.91 -0.02 3.18 16 38 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 40 H 0.11 1.67 8.03 -2.39 -0.02 1.66 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.09 2.15 7.81 -2.38 -0.02 2.13 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -75.80 350.64 4.64 -71.15 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.94 Total: 16.42 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 5.04 Total: -7.26 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.61 Total: -83.81 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.74 Total: -44.08 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.80 4.64 -71.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.193 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds