Wall clock time and date at job start Tue Mar 31 2020 05:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32988 * 119.99848 * 2 1 4 4 C 1.47107 * 119.99714 * 181.12732 * 3 2 1 5 5 O 1.21611 * 119.99942 * 354.08545 * 4 3 2 6 6 N 1.34777 * 120.00091 * 174.08331 * 4 3 2 7 7 C 1.47434 * 125.64699 * 359.97438 * 6 4 3 8 8 C 1.54907 * 104.83237 * 155.90997 * 7 6 4 9 9 C 1.55157 * 101.61732 * 36.98939 * 8 7 6 10 10 O 1.42896 * 110.72115 * 82.88058 * 9 8 7 11 11 C 1.50704 * 110.72050 * 206.15684 * 9 8 7 12 12 H 1.08001 * 119.99720 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99814 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00390 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99519 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47678 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47143 * 120.00310 * 15 13 11 18 18 H 1.48498 * 109.47101 * 239.99865 * 15 13 11 19 19 C 1.47016 * 125.65032 * 180.02562 * 6 4 3 20 20 C 1.50700 * 119.99939 * 179.97438 * 2 1 3 21 21 C 1.53001 * 109.47365 * 243.96501 * 20 2 1 22 22 C 1.53005 * 109.47140 * 3.96738 * 20 2 1 23 23 C 1.52998 * 109.46791 * 123.96318 * 20 2 1 24 24 H 1.09002 * 109.47314 * 90.00279 * 1 2 3 25 25 H 1.09001 * 109.47022 * 210.00278 * 1 2 3 26 26 H 1.09004 * 109.46822 * 330.00234 * 1 2 3 27 27 H 1.08003 * 120.00540 * 1.12321 * 3 2 1 28 28 H 1.08998 * 110.36255 * 37.06867 * 7 6 4 29 29 H 1.09003 * 110.36345 * 274.74801 * 7 6 4 30 30 H 1.08991 * 111.00565 * 155.08425 * 8 7 6 31 31 H 1.09003 * 111.00217 * 278.89740 * 8 7 6 32 32 H 0.96700 * 113.99846 * 179.97438 * 10 9 8 33 33 H 0.96998 * 120.00532 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.88325 * 300.43693 * 19 6 4 35 35 H 1.08998 * 109.88853 * 61.44984 * 19 6 4 36 36 H 1.08997 * 109.47079 * 89.72910 * 21 20 2 37 37 H 1.09003 * 109.47017 * 209.72666 * 21 20 2 38 38 H 1.08995 * 109.47073 * 329.72812 * 21 20 2 39 39 H 1.08995 * 109.46954 * 59.99164 * 22 20 2 40 40 H 1.08994 * 109.47144 * 179.97438 * 22 20 2 41 41 H 1.09002 * 109.46589 * 299.99900 * 22 20 2 42 42 H 1.08999 * 109.47627 * 23.23300 * 23 20 2 43 43 H 1.09006 * 109.47261 * 143.23300 * 23 20 2 44 44 H 1.09000 * 109.47106 * 263.22743 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6428 1.1518 -0.0251 5 8 4.2525 0.1033 0.0628 6 7 4.3147 2.3140 -0.1454 7 6 3.7046 3.6512 -0.2609 8 6 4.7949 4.6293 0.2431 9 6 6.0867 3.9658 -0.3034 10 8 6.3041 4.3306 -1.6678 11 6 7.2760 4.3356 0.5451 12 1 7.1489 4.9829 1.4002 13 6 8.5265 3.8484 0.2289 14 7 8.6813 3.0607 -0.8127 15 14 10.0008 4.3074 1.2802 16 1 9.5634 5.1993 2.3840 17 1 10.6061 3.0761 1.8484 18 1 11.0052 5.0120 0.4437 19 6 5.7772 2.4581 -0.1844 20 6 2.2605 -1.3051 0.0006 21 6 3.0638 -1.4297 1.2968 22 6 1.2692 -2.4664 -0.0987 23 6 3.2134 -1.3443 -1.1958 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6321 2.0870 0.0183 28 1 2.8157 3.7180 0.3664 29 1 3.4538 3.8652 -1.2998 30 1 4.6557 5.6228 -0.1830 31 1 4.8083 4.6720 1.3322 32 1 7.0996 3.9422 -2.0568 33 1 9.5611 2.7182 -1.0353 34 1 6.2133 2.0622 0.7328 35 1 6.1795 1.9253 -1.0460 36 1 2.4533 -1.9164 2.0572 37 1 3.9588 -2.0245 1.1138 38 1 3.3518 -0.4370 1.6426 39 1 0.6969 -2.3775 -1.0220 40 1 1.8142 -3.4103 -0.0987 41 1 0.5903 -2.4383 0.7536 42 1 3.4380 -0.3266 -1.5150 43 1 4.1369 -1.8471 -0.9085 44 1 2.7442 -1.8873 -2.0163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:43 Heat of formation + Delta-G solvation = -47.351980 kcal Electronic energy + Delta-G solvation = -23600.064351 eV Core-core repulsion = 20325.769716 eV Total energy + Delta-G solvation = -3274.294635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23058 -38.17784 -36.30114 -34.28048 -32.42857 -32.16005 -30.01294 -28.89321 -27.71626 -26.89735 -26.31856 -24.86964 -22.72867 -21.68368 -19.65238 -19.19132 -17.26535 -16.97512 -16.66372 -15.46882 -15.31346 -14.91916 -14.52609 -14.24328 -14.10537 -13.58699 -13.27177 -12.97325 -12.86234 -12.74154 -12.69876 -12.37066 -12.05014 -11.78225 -11.61877 -11.56731 -11.43764 -11.06533 -10.80779 -10.68478 -10.58799 -10.51223 -10.48683 -10.43136 -10.26732 -10.09454 -9.33168 -8.86696 -8.84501 -8.66574 -8.28228 -7.64315 -6.29316 -4.37686 1.66367 3.19623 3.28594 3.32040 3.77087 3.82898 4.26837 4.71252 4.79822 4.98528 5.16954 5.24946 5.39004 5.44456 5.47999 5.52326 5.58792 5.74389 5.80269 5.81633 5.86978 5.94646 6.07083 6.07342 6.10991 6.16794 6.27925 6.39771 6.44594 6.53002 6.63825 6.70341 6.79570 6.82077 6.88196 6.92971 7.09226 7.29434 7.41051 7.73885 8.00859 8.34390 8.65372 8.87453 9.31474 9.44295 10.78470 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004615 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.646751 B = 6065.273304 C = 6563.691566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 C -0.217 4.217 4 C 0.535 3.465 5 O -0.528 6.528 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.119 4.119 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.537 4.537 12 H 0.067 0.933 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.105 3.895 20 C -0.028 4.028 21 C -0.112 4.112 22 C -0.142 4.142 23 C -0.110 4.110 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.386 0.614 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 -5.286 1.133 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.238 4.238 4 C 0.327 3.673 5 O -0.409 6.409 6 N -0.340 5.340 7 C -0.020 4.020 8 C -0.157 4.157 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.575 4.575 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.535 5.535 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.017 4.017 20 C -0.028 4.028 21 C -0.169 4.169 22 C -0.199 4.199 23 C -0.167 4.167 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.370 -5.656 1.178 15.488 hybrid contribution 1.360 0.016 0.388 1.414 sum -13.010 -5.640 1.566 14.266 Atomic orbital electron populations 1.21031 0.91659 1.02991 1.02539 1.22530 0.95297 0.94639 0.91398 1.22452 0.93832 0.98314 1.09207 1.18018 0.87895 0.82606 0.78780 1.90893 1.70976 1.29157 1.49887 1.48674 1.09211 1.05565 1.70564 1.22294 0.96358 0.83124 1.00254 1.22758 0.94671 0.97982 1.00263 1.19488 0.91438 0.87147 0.81198 1.86070 1.50316 1.75908 1.27370 1.21581 0.92099 1.30843 1.12980 0.91500 1.25066 0.99327 0.93706 0.95133 1.69582 1.24386 1.32874 1.26708 0.86354 0.81942 0.78399 0.80254 1.19581 1.20756 1.20725 1.22961 0.76290 1.00919 1.01562 1.19577 0.94410 0.90790 0.98001 1.21948 0.98192 1.02706 0.94025 1.22075 0.98652 0.98159 1.01023 1.22075 0.97804 1.02493 0.94330 0.90734 0.90792 0.91553 0.86128 0.92137 0.91929 0.90634 0.90644 0.76235 0.91988 0.91806 0.91964 0.95383 0.92398 0.91331 0.92881 0.92633 0.92786 0.91535 0.92024 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.21 36.01 0.33 -0.87 16 2 C -0.04 -0.49 4.97 -101.17 -0.50 -0.99 16 3 C -0.22 -3.28 8.53 -37.80 -0.32 -3.61 16 4 C 0.54 10.26 5.87 -12.66 -0.07 10.18 16 5 O -0.53 -11.00 8.64 5.27 0.05 -10.95 16 6 N -0.61 -12.41 3.33 -171.87 -0.57 -12.98 16 7 C 0.10 1.83 6.56 -2.53 -0.02 1.81 16 8 C -0.12 -2.37 6.22 -24.58 -0.15 -2.52 16 9 C 0.25 6.00 0.86 -89.91 -0.08 5.92 16 10 O -0.59 -14.90 13.09 -35.23 -0.46 -15.36 16 11 C -0.54 -14.04 8.11 -34.44 -0.28 -14.32 16 12 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 13 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 14 N -0.90 -23.88 10.98 55.43 0.61 -23.27 16 15 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.10 2.52 5.54 -3.04 -0.02 2.50 16 20 C -0.03 -0.39 0.75 -155.66 -0.12 -0.51 16 21 C -0.11 -1.72 7.56 37.16 0.28 -1.44 16 22 C -0.14 -1.56 6.96 37.16 0.26 -1.30 16 23 C -0.11 -1.77 7.53 37.16 0.28 -1.49 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.63 6.01 -51.93 -0.31 0.31 16 26 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 27 H 0.12 1.58 6.82 -52.48 -0.36 1.22 16 28 H 0.06 0.88 7.08 -51.93 -0.37 0.51 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.45 8.02 -51.93 -0.42 1.03 16 32 H 0.39 10.12 6.98 45.56 0.32 10.44 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 34 H 0.06 1.67 7.81 -51.93 -0.41 1.26 16 35 H 0.06 1.64 8.07 -51.93 -0.42 1.22 16 36 H 0.03 0.37 7.82 -51.93 -0.41 -0.04 16 37 H 0.06 0.95 7.22 -51.93 -0.37 0.57 16 38 H 0.07 1.22 5.38 -51.93 -0.28 0.94 16 39 H 0.05 0.53 7.91 -51.93 -0.41 0.12 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.52 6.79 -51.93 -0.35 0.17 16 42 H 0.07 1.23 4.89 -51.93 -0.25 0.98 16 43 H 0.06 1.07 6.79 -51.93 -0.35 0.72 16 44 H 0.02 0.32 7.73 -51.93 -0.40 -0.09 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -27.85 332.88 -7.33 -35.18 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.45 Total: 11.83 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.50 Total: -4.90 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.04 Total: -36.25 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.42 Total: -26.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.85 -7.33 -35.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.175 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds