Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32988 * 119.99848 * 2 1 4 4 C 1.47107 * 119.99714 * 181.12732 * 3 2 1 5 5 O 1.21611 * 119.99942 * 354.08545 * 4 3 2 6 6 N 1.34777 * 120.00091 * 174.08331 * 4 3 2 7 7 C 1.47434 * 125.64699 * 359.97438 * 6 4 3 8 8 C 1.54907 * 104.83237 * 155.90997 * 7 6 4 9 9 C 1.55157 * 101.61732 * 36.98939 * 8 7 6 10 10 O 1.42896 * 110.72115 * 82.88058 * 9 8 7 11 11 C 1.50704 * 110.72050 * 206.15684 * 9 8 7 12 12 H 1.08001 * 119.99720 * 359.97438 * 11 9 8 13 13 C 1.37877 * 119.99814 * 180.02562 * 11 9 8 14 14 N 1.31509 * 120.00390 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99519 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47678 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47143 * 120.00310 * 15 13 11 18 18 H 1.48498 * 109.47101 * 239.99865 * 15 13 11 19 19 C 1.47016 * 125.65032 * 180.02562 * 6 4 3 20 20 C 1.50700 * 119.99939 * 179.97438 * 2 1 3 21 21 C 1.53001 * 109.47365 * 243.96501 * 20 2 1 22 22 C 1.53005 * 109.47140 * 3.96738 * 20 2 1 23 23 C 1.52998 * 109.46791 * 123.96318 * 20 2 1 24 24 H 1.09002 * 109.47314 * 90.00279 * 1 2 3 25 25 H 1.09001 * 109.47022 * 210.00278 * 1 2 3 26 26 H 1.09004 * 109.46822 * 330.00234 * 1 2 3 27 27 H 1.08003 * 120.00540 * 1.12321 * 3 2 1 28 28 H 1.08998 * 110.36255 * 37.06867 * 7 6 4 29 29 H 1.09003 * 110.36345 * 274.74801 * 7 6 4 30 30 H 1.08991 * 111.00565 * 155.08425 * 8 7 6 31 31 H 1.09003 * 111.00217 * 278.89740 * 8 7 6 32 32 H 0.96700 * 113.99846 * 179.97438 * 10 9 8 33 33 H 0.96998 * 120.00532 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.88325 * 300.43693 * 19 6 4 35 35 H 1.08998 * 109.88853 * 61.44984 * 19 6 4 36 36 H 1.08997 * 109.47079 * 89.72910 * 21 20 2 37 37 H 1.09003 * 109.47017 * 209.72666 * 21 20 2 38 38 H 1.08995 * 109.47073 * 329.72812 * 21 20 2 39 39 H 1.08995 * 109.46954 * 59.99164 * 22 20 2 40 40 H 1.08994 * 109.47144 * 179.97438 * 22 20 2 41 41 H 1.09002 * 109.46589 * 299.99900 * 22 20 2 42 42 H 1.08999 * 109.47627 * 23.23300 * 23 20 2 43 43 H 1.09006 * 109.47261 * 143.23300 * 23 20 2 44 44 H 1.09000 * 109.47106 * 263.22743 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6428 1.1518 -0.0251 5 8 4.2525 0.1033 0.0628 6 7 4.3147 2.3140 -0.1454 7 6 3.7046 3.6512 -0.2609 8 6 4.7949 4.6293 0.2431 9 6 6.0867 3.9658 -0.3034 10 8 6.3041 4.3306 -1.6678 11 6 7.2760 4.3356 0.5451 12 1 7.1489 4.9829 1.4002 13 6 8.5265 3.8484 0.2289 14 7 8.6813 3.0607 -0.8127 15 14 10.0008 4.3074 1.2802 16 1 9.5634 5.1993 2.3840 17 1 10.6061 3.0761 1.8484 18 1 11.0052 5.0120 0.4437 19 6 5.7772 2.4581 -0.1844 20 6 2.2605 -1.3051 0.0006 21 6 3.0638 -1.4297 1.2968 22 6 1.2692 -2.4664 -0.0987 23 6 3.2134 -1.3443 -1.1958 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6321 2.0870 0.0183 28 1 2.8157 3.7180 0.3664 29 1 3.4538 3.8652 -1.2998 30 1 4.6557 5.6228 -0.1830 31 1 4.8083 4.6720 1.3322 32 1 7.0996 3.9422 -2.0568 33 1 9.5611 2.7182 -1.0353 34 1 6.2133 2.0622 0.7328 35 1 6.1795 1.9253 -1.0460 36 1 2.4533 -1.9164 2.0572 37 1 3.9588 -2.0245 1.1138 38 1 3.3518 -0.4370 1.6426 39 1 0.6969 -2.3775 -1.0220 40 1 1.8142 -3.4103 -0.0987 41 1 0.5903 -2.4383 0.7536 42 1 3.4380 -0.3266 -1.5150 43 1 4.1369 -1.8471 -0.9085 44 1 2.7442 -1.8873 -2.0163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844015992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = -65.148434 kcal Electronic energy + Delta-G solvation = -23600.836063 eV Core-core repulsion = 20325.769716 eV Total energy + Delta-G solvation = -3275.066347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62705 -39.77248 -37.73792 -36.03208 -34.19566 -33.55045 -31.64472 -30.11109 -29.29370 -28.18611 -27.63948 -26.47171 -24.26564 -22.88534 -21.42158 -20.66469 -19.19555 -18.40585 -17.94816 -17.23126 -16.81470 -16.55262 -16.20458 -15.41420 -15.28736 -15.02836 -14.82877 -14.74394 -14.28475 -14.09634 -13.78716 -13.50361 -13.44782 -13.40259 -13.11116 -12.86952 -12.73144 -12.53749 -12.47808 -12.36605 -12.28009 -12.07553 -11.81381 -11.78650 -11.59976 -11.41208 -11.20187 -10.67207 -10.43157 -10.18107 -9.97892 -9.27297 -8.29345 -6.45392 0.49126 1.37856 1.40831 1.51881 2.24313 2.37672 2.41864 2.97239 3.62191 3.70885 3.83017 3.99528 4.13387 4.20036 4.26906 4.39068 4.44454 4.49669 4.64971 4.67365 4.71832 4.76824 4.83951 4.88424 4.92359 4.93408 5.01762 5.13429 5.14991 5.20819 5.23018 5.24435 5.32572 5.38979 5.47879 5.51616 5.54459 5.60088 5.74086 5.85192 6.02987 6.61505 6.83581 7.26960 7.36200 7.37201 8.77055 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026593 B = 0.004615 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.646751 B = 6065.273304 C = 6563.691566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.015 4.015 3 C -0.238 4.238 4 C 0.525 3.475 5 O -0.556 6.556 6 N -0.618 5.618 7 C 0.109 3.891 8 C -0.114 4.114 9 C 0.232 3.768 10 O -0.590 6.590 11 C -0.558 4.558 12 H 0.067 0.933 13 C 0.025 3.975 14 N -0.919 5.919 15 Si 0.964 3.036 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.276 1.276 19 C 0.126 3.874 20 C -0.035 4.035 21 C -0.106 4.106 22 C -0.136 4.136 23 C -0.104 4.104 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.377 0.623 33 H 0.271 0.729 34 H 0.029 0.971 35 H 0.023 0.977 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 -5.180 1.869 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.017 4.017 3 C -0.259 4.259 4 C 0.320 3.680 5 O -0.439 6.439 6 N -0.351 5.351 7 C -0.013 4.013 8 C -0.151 4.151 9 C 0.191 3.809 10 O -0.399 6.399 11 C -0.596 4.596 12 H 0.085 0.915 13 C -0.175 4.175 14 N -0.559 5.559 15 Si 0.789 3.211 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.202 1.202 19 C 0.002 3.998 20 C -0.035 4.035 21 C -0.163 4.163 22 C -0.193 4.193 23 C -0.161 4.161 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.228 0.772 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.644 -5.538 1.918 18.592 hybrid contribution 2.380 -0.131 0.145 2.388 sum -15.264 -5.669 2.063 16.413 Atomic orbital electron populations 1.21143 0.87923 1.04763 1.04115 1.22933 0.97627 0.93256 0.87917 1.22397 0.90780 1.00410 1.12270 1.18885 0.89866 0.81672 0.77606 1.90891 1.72068 1.30106 1.50820 1.48741 1.07483 1.07345 1.71564 1.22398 0.96754 0.80773 1.01372 1.22750 0.92933 0.98877 1.00576 1.19726 0.93135 0.87563 0.80456 1.86057 1.49809 1.75870 1.28180 1.21916 0.93271 1.30999 1.13401 0.91488 1.25825 1.01895 0.93605 0.96203 1.69690 1.24839 1.33491 1.27853 0.85409 0.78785 0.77981 0.78894 1.18809 1.20964 1.20151 1.22385 0.79055 1.00449 0.97918 1.19649 0.94754 0.93194 0.95918 1.21843 0.98088 1.00807 0.95603 1.22035 0.98099 0.96333 1.02849 1.21957 0.97619 1.00504 0.96054 0.88940 0.89025 0.89862 0.83430 0.87832 0.91490 0.89372 0.89992 0.77203 0.91995 0.95296 0.95831 0.92895 0.94628 0.94140 0.91255 0.92713 0.90619 0.94428 0.94695 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.21 71.24 0.66 -1.06 16 2 C -0.02 -0.36 4.97 -17.62 -0.09 -0.45 16 3 C -0.24 -6.72 8.53 23.43 0.20 -6.52 16 4 C 0.53 20.50 5.87 86.57 0.51 21.01 16 5 O -0.56 -24.48 8.64 -4.07 -0.04 -24.52 16 6 N -0.62 -25.76 3.33 -815.94 -2.71 -28.48 16 7 C 0.11 3.70 6.56 86.85 0.57 4.27 16 8 C -0.11 -4.44 6.22 31.99 0.20 -4.25 16 9 C 0.23 11.53 0.86 -10.33 -0.01 11.52 16 10 O -0.59 -30.93 13.09 -148.98 -1.95 -32.88 16 11 C -0.56 -29.91 8.11 25.60 0.21 -29.70 16 12 H 0.07 3.50 7.76 -2.91 -0.02 3.47 16 13 C 0.03 1.34 5.28 84.66 0.45 1.79 16 14 N -0.92 -51.06 10.98 21.45 0.24 -50.82 16 15 Si 0.96 42.72 29.54 68.60 2.03 44.75 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 19 C 0.13 6.40 5.54 86.75 0.48 6.88 16 20 C -0.04 -0.93 0.75 -52.93 -0.04 -0.97 16 21 C -0.11 -3.26 7.56 71.98 0.54 -2.72 16 22 C -0.14 -2.51 6.96 71.98 0.50 -2.01 16 23 C -0.10 -3.40 7.53 71.98 0.54 -2.86 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 1.01 6.01 -2.39 -0.01 0.99 16 26 H 0.08 0.96 8.07 -2.38 -0.02 0.94 16 27 H 0.15 3.29 6.82 -2.91 -0.02 3.27 16 28 H 0.10 2.64 7.08 -2.39 -0.02 2.63 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.08 3.07 8.02 -2.39 -0.02 3.05 16 32 H 0.38 20.81 6.98 -74.06 -0.52 20.29 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.03 1.62 7.81 -2.38 -0.02 1.60 16 35 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 36 H 0.05 1.32 7.82 -2.39 -0.02 1.30 16 37 H 0.03 1.21 7.22 -2.39 -0.02 1.19 16 38 H 0.04 1.46 5.38 -2.39 -0.01 1.44 16 39 H 0.07 1.08 7.91 -2.39 -0.02 1.06 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.09 6.79 -2.39 -0.02 1.08 16 42 H 0.04 1.42 4.89 -2.39 -0.01 1.41 16 43 H 0.03 1.28 6.79 -2.38 -0.02 1.27 16 44 H 0.04 1.16 7.73 -2.39 -0.02 1.15 16 Total: -1.00 -64.96 332.88 2.76 -62.21 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.48 Total: 34.81 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 4.72 Total: -5.06 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.48 Total: -79.30 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.99 Total: -57.40 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -64.96 2.76 -62.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.943 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds