Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32986 * 119.99982 * 2 1 4 4 C 1.47107 * 120.00158 * 353.10668 * 3 2 1 5 5 O 1.21615 * 119.99889 * 353.71122 * 4 3 2 6 6 N 1.34771 * 120.00004 * 173.70950 * 4 3 2 7 7 C 1.47435 * 125.65083 * 359.97438 * 6 4 3 8 8 C 1.54901 * 104.83256 * 155.90533 * 7 6 4 9 9 C 1.55162 * 101.58316 * 37.01118 * 8 7 6 10 10 O 1.42900 * 110.72092 * 82.85815 * 9 8 7 11 11 C 1.50699 * 110.72159 * 205.95733 * 9 8 7 12 12 H 1.07998 * 119.99833 * 357.55197 * 11 9 8 13 13 C 1.37879 * 120.00059 * 177.56202 * 11 9 8 14 14 N 1.31509 * 119.99727 * 359.97438 * 13 11 9 15 15 Si 1.86796 * 119.99759 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47322 * 59.99824 * 15 13 11 17 17 H 1.48501 * 109.46976 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47452 * 299.99483 * 15 13 11 19 19 C 1.47020 * 125.64962 * 180.02562 * 6 4 3 20 20 C 1.50704 * 119.99711 * 179.97438 * 2 1 3 21 21 C 1.53003 * 109.46696 * 180.02562 * 20 2 1 22 22 C 1.52999 * 109.47329 * 300.00308 * 20 2 1 23 23 C 1.52997 * 109.46917 * 60.00354 * 20 2 1 24 24 H 1.09002 * 109.47017 * 84.48051 * 1 2 3 25 25 H 1.09003 * 109.47116 * 204.48025 * 1 2 3 26 26 H 1.09000 * 109.47286 * 324.48104 * 1 2 3 27 27 H 1.08001 * 120.00050 * 173.10638 * 3 2 1 28 28 H 1.08997 * 110.36125 * 37.06645 * 7 6 4 29 29 H 1.09002 * 110.36576 * 274.74872 * 7 6 4 30 30 H 1.08999 * 111.00661 * 278.93746 * 8 7 6 31 31 H 1.09002 * 111.03996 * 155.09880 * 8 7 6 32 32 H 0.96691 * 114.00359 * 180.02562 * 10 9 8 33 33 H 0.97002 * 120.00092 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.88501 * 61.60726 * 19 6 4 35 35 H 1.09002 * 109.88366 * 300.43953 * 19 6 4 36 36 H 1.08997 * 109.47261 * 60.00095 * 21 20 2 37 37 H 1.09003 * 109.46772 * 179.97438 * 21 20 2 38 38 H 1.08997 * 109.46889 * 299.99876 * 21 20 2 39 39 H 1.08997 * 109.47333 * 60.00082 * 22 20 2 40 40 H 1.08997 * 109.47079 * 180.02562 * 22 20 2 41 41 H 1.09005 * 109.47132 * 299.99782 * 22 20 2 42 42 H 1.08997 * 109.47563 * 59.99576 * 23 20 2 43 43 H 1.09003 * 109.46818 * 179.97438 * 23 20 2 44 44 H 1.08997 * 109.47148 * 299.99552 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4444 2.4211 -0.1529 5 8 0.2523 2.4136 -0.3935 6 7 2.0990 3.5924 -0.0264 7 6 3.5363 3.7466 0.2636 8 6 3.9052 5.1445 -0.2925 9 6 2.6283 5.9600 0.0426 10 8 2.6630 6.4208 1.3948 11 6 2.4699 7.1175 -0.9093 12 1 3.2194 7.3019 -1.6647 13 6 1.3682 7.9413 -0.8156 14 7 0.4555 7.7165 0.1041 15 14 1.1722 9.3765 -1.9950 16 1 1.1226 8.8681 -3.3894 17 1 -0.0869 10.1013 -1.6878 18 1 2.3249 10.3008 -1.8459 19 6 1.4978 4.9280 -0.1535 20 6 2.2605 -1.3052 0.0006 21 6 3.7648 -1.0256 0.0011 22 6 1.8908 -2.1070 1.2501 23 6 1.8909 -2.1079 -1.2483 24 1 -0.3633 0.0988 -1.0229 25 1 -0.3633 -0.9353 0.4259 26 1 -0.3634 0.8364 0.5970 27 1 3.2461 1.1551 0.1123 28 1 4.1109 2.9724 -0.2447 29 1 3.7128 3.7072 1.3385 30 1 4.0724 5.1052 -1.3688 31 1 4.7755 5.5529 0.2213 32 1 1.8872 6.9359 1.6548 33 1 -0.3198 8.2958 0.1698 34 1 0.7339 5.0651 0.6118 35 1 1.0580 5.0438 -1.1442 36 1 4.0277 -0.4538 0.8910 37 1 4.3097 -1.9696 0.0020 38 1 4.0284 -0.4542 -0.8889 39 1 0.8192 -2.3061 1.2502 40 1 2.4361 -3.0507 1.2507 41 1 2.1542 -1.5350 2.1399 42 1 2.1542 -1.5368 -2.1386 43 1 2.4362 -3.0517 -1.2481 44 1 0.8193 -2.3071 -1.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = -82.061626 kcal Electronic energy + Delta-G solvation = -23031.905934 eV Core-core repulsion = 19756.106176 eV Total energy + Delta-G solvation = -3275.799758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.66849 -38.26636 -36.97227 -34.26661 -32.18418 -32.08695 -30.17762 -28.79597 -27.80316 -27.41174 -26.35191 -24.91757 -22.99112 -21.88303 -19.62535 -18.84989 -17.25335 -17.11534 -16.70398 -15.52857 -15.10436 -14.79809 -14.58661 -14.36435 -14.26001 -13.91645 -13.36234 -13.01043 -12.87742 -12.77797 -12.39574 -12.28657 -12.18440 -12.08436 -11.80549 -11.67756 -11.45680 -11.36835 -11.12856 -11.03428 -11.00229 -10.77291 -10.65097 -10.57307 -10.51526 -10.15225 -9.30832 -9.02682 -8.92409 -8.65726 -8.28980 -7.74620 -6.27731 -4.36683 1.68069 3.23041 3.28618 3.30522 3.76338 3.82609 4.27672 4.51886 4.64777 4.82384 4.99232 5.12378 5.18748 5.36178 5.44582 5.44935 5.48625 5.59313 5.65492 5.70693 5.74324 5.77040 5.85285 5.92586 5.96535 6.00884 6.07185 6.10126 6.14984 6.17048 6.34869 6.53614 6.71753 6.74199 6.82647 6.89729 7.07872 7.30777 7.42129 7.74241 8.01823 8.33739 8.66028 8.87129 9.31697 9.41745 10.79905 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.003959 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.649045 B = 7070.775068 C = 7382.354023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.219 4.219 4 C 0.548 3.452 5 O -0.552 6.552 6 N -0.608 5.608 7 C 0.103 3.897 8 C -0.119 4.119 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.539 4.539 12 H 0.066 0.934 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.105 3.895 20 C -0.039 4.039 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.136 4.136 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.384 0.616 33 H 0.271 0.729 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -16.562 0.600 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.038 4.038 3 C -0.240 4.240 4 C 0.339 3.661 5 O -0.434 6.434 6 N -0.340 5.340 7 C -0.020 4.020 8 C -0.157 4.157 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.017 4.017 20 C -0.039 4.039 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.194 4.194 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.235 0.765 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.690 -16.843 0.541 17.492 hybrid contribution -0.634 1.161 -0.611 1.457 sum 4.055 -15.682 -0.070 16.198 Atomic orbital electron populations 1.21084 0.91045 1.01950 1.03406 1.22350 0.96464 0.93213 0.91741 1.22663 1.00482 0.92131 1.08705 1.18187 0.86557 0.83344 0.78033 1.90714 1.15083 1.87242 1.50363 1.48688 1.10140 1.06757 1.68451 1.22299 0.81582 0.98272 0.99848 1.22760 0.99396 0.93067 1.00446 1.19480 0.88211 0.90031 0.81529 1.86077 1.48838 1.74539 1.30101 1.21491 1.07378 1.12063 1.16814 0.91589 1.25074 0.94999 0.97712 0.95470 1.69636 1.11167 1.39016 1.33581 0.86456 0.77539 0.81808 0.81084 1.20028 1.21058 1.19974 1.22944 0.98144 0.79060 1.01552 1.19682 0.94954 0.92768 0.96480 1.21991 0.94237 1.01716 1.02409 1.21870 1.01761 0.99372 0.96629 1.21817 1.01769 0.99247 0.96542 0.90739 0.93167 0.89199 0.85525 0.92098 0.91839 0.90583 0.90575 0.76464 0.91903 0.91821 0.91732 0.92081 0.92366 0.92045 0.92163 0.92335 0.92365 0.92354 0.92288 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 7.81 36.01 0.28 -1.42 16 2 C -0.04 -0.48 4.90 -101.17 -0.50 -0.98 16 3 C -0.22 -3.41 8.42 -37.81 -0.32 -3.73 16 4 C 0.55 11.15 7.65 -12.67 -0.10 11.05 16 5 O -0.55 -12.77 13.61 5.26 0.07 -12.70 16 6 N -0.61 -12.87 3.33 -171.91 -0.57 -13.44 16 7 C 0.10 1.86 6.56 -2.53 -0.02 1.84 16 8 C -0.12 -2.39 6.22 -24.58 -0.15 -2.54 16 9 C 0.25 6.06 0.86 -89.93 -0.08 5.99 16 10 O -0.59 -14.92 13.09 -35.23 -0.46 -15.38 16 11 C -0.54 -14.21 8.12 -34.44 -0.28 -14.49 16 12 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 13 C 0.07 1.86 5.26 -17.82 -0.09 1.76 16 14 N -0.90 -24.05 10.97 55.43 0.61 -23.44 16 15 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.10 2.59 5.39 -3.06 -0.02 2.57 16 20 C -0.04 -0.40 0.87 -155.66 -0.14 -0.53 16 21 C -0.15 -1.36 7.14 37.16 0.27 -1.09 16 22 C -0.14 -1.24 8.30 37.16 0.31 -0.93 16 23 C -0.14 -1.25 8.32 37.16 0.31 -0.94 16 24 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 25 H 0.05 0.58 6.65 -51.93 -0.35 0.23 16 26 H 0.09 1.55 6.12 -51.93 -0.32 1.24 16 27 H 0.13 1.70 4.55 -52.49 -0.24 1.46 16 28 H 0.06 0.89 7.07 -51.93 -0.37 0.53 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.38 10.06 7.17 45.56 0.33 10.39 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.06 1.72 8.01 -51.93 -0.42 1.30 16 35 H 0.06 1.74 7.82 -51.93 -0.41 1.33 16 36 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.59 7.61 -51.93 -0.40 0.19 16 39 H 0.06 0.53 6.80 -51.93 -0.35 0.17 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.54 7.76 -51.93 -0.40 0.13 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -29.07 343.79 -7.35 -36.42 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.64 Total: 11.25 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.52 Total: -3.44 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.04 Total: -36.88 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.39 Total: -28.07 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.07 -7.35 -36.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.639 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds