Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32989 * 120.00075 * 2 1 4 4 C 1.47105 * 120.00203 * 173.24531 * 3 2 1 5 5 O 1.21611 * 119.99750 * 358.48207 * 4 3 2 6 6 N 1.34776 * 119.99848 * 178.47964 * 4 3 2 7 7 C 1.47423 * 125.65175 * 0.02645 * 6 4 3 8 8 C 1.54911 * 104.82970 * 204.09430 * 7 6 4 9 9 C 1.55156 * 101.58227 * 322.98807 * 8 7 6 10 10 O 1.42904 * 110.72175 * 277.14435 * 9 8 7 11 11 C 1.50695 * 110.71891 * 154.04724 * 9 8 7 12 12 H 1.07998 * 120.00057 * 0.02562 * 11 9 8 13 13 C 1.37881 * 120.00041 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99978 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00013 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.46866 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46996 * 119.99719 * 15 13 11 18 18 H 1.48502 * 109.46843 * 239.99412 * 15 13 11 19 19 C 1.47026 * 125.64370 * 179.72030 * 6 4 3 20 20 C 1.50700 * 119.99962 * 180.02562 * 2 1 3 21 21 C 1.53003 * 109.47080 * 248.56448 * 20 2 1 22 22 C 1.52999 * 109.47501 * 128.56644 * 20 2 1 23 23 C 1.53003 * 109.47214 * 8.56036 * 20 2 1 24 24 H 1.09002 * 109.46763 * 269.99430 * 1 2 3 25 25 H 1.08999 * 109.47173 * 29.99258 * 1 2 3 26 26 H 1.09001 * 109.46952 * 149.99685 * 1 2 3 27 27 H 1.08004 * 119.99927 * 353.25421 * 3 2 1 28 28 H 1.08995 * 110.36333 * 322.92923 * 7 6 4 29 29 H 1.08994 * 110.36388 * 85.14173 * 7 6 4 30 30 H 1.08992 * 111.00871 * 81.06763 * 8 7 6 31 31 H 1.09000 * 110.99982 * 204.91607 * 8 7 6 32 32 H 0.96701 * 114.00219 * 180.02562 * 10 9 8 33 33 H 0.96994 * 120.00430 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.87845 * 298.39365 * 19 6 4 35 35 H 1.08996 * 109.88268 * 59.55813 * 19 6 4 36 36 H 1.09003 * 109.46956 * 333.15402 * 21 20 2 37 37 H 1.08997 * 109.47237 * 213.15168 * 21 20 2 38 38 H 1.08999 * 109.47051 * 93.14272 * 21 20 2 39 39 H 1.08998 * 109.47319 * 141.47881 * 22 20 2 40 40 H 1.09006 * 109.46840 * 261.48302 * 22 20 2 41 41 H 1.09004 * 109.47027 * 21.47623 * 22 20 2 42 42 H 1.08996 * 109.47414 * 300.00340 * 23 20 2 43 43 H 1.09002 * 109.46818 * 60.00903 * 23 20 2 44 44 H 1.09001 * 109.47213 * 180.02562 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6354 1.1562 0.1498 5 8 4.2342 0.1086 0.3014 6 7 4.3123 2.3212 0.1191 7 6 3.7153 3.6576 -0.0566 8 6 4.8588 4.5303 -0.6313 9 6 6.0893 3.9742 0.1329 10 8 6.1964 4.5757 1.4247 11 6 7.3521 4.1909 -0.6603 12 1 7.3081 4.6781 -1.6231 13 6 8.5637 3.7670 -0.1569 14 7 8.6174 3.1741 1.0158 15 14 10.1293 4.0362 -1.1399 16 1 9.8008 4.7205 -2.4162 17 1 11.0684 4.8767 -0.3545 18 1 10.7629 2.7250 -1.4304 19 6 5.7681 2.4702 0.2616 20 6 2.2605 -1.3051 -0.0006 21 6 2.9721 -1.4838 1.3421 22 6 3.2943 -1.2967 -1.1284 23 6 1.2802 -2.4599 -0.2158 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6376 2.0838 -0.1099 28 1 2.8832 3.6118 -0.7592 29 1 3.3798 4.0522 0.9024 30 1 4.9645 4.3781 -1.7054 31 1 4.6995 5.5838 -0.4014 32 1 6.9501 4.2624 1.9433 33 1 9.4697 2.8763 1.3702 34 1 6.0843 2.1038 1.2383 35 1 6.2764 1.9156 -0.5271 36 1 3.1796 -0.5057 1.7763 37 1 3.9089 -2.0194 1.1884 38 1 2.3345 -2.0534 2.0182 39 1 4.2075 -1.7848 -0.7879 40 1 2.8959 -1.8319 -1.9904 41 1 3.5159 -0.2674 -1.4105 42 1 0.5437 -2.4659 0.5877 43 1 0.7733 -2.3327 -1.1724 44 1 1.8251 -3.4039 -0.2158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -50.314401 kcal Electronic energy + Delta-G solvation = -23597.162895 eV Core-core repulsion = 20322.739800 eV Total energy + Delta-G solvation = -3274.423095 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19906 -38.17923 -36.30520 -34.27066 -32.42690 -32.15491 -30.00998 -28.90799 -27.71739 -26.90078 -26.30711 -24.87507 -22.73212 -21.68777 -19.65211 -19.18809 -17.25325 -16.95095 -16.68047 -15.51711 -15.16167 -14.96141 -14.55417 -14.20459 -14.10963 -13.57599 -13.25385 -12.96937 -12.88430 -12.72845 -12.69739 -12.37909 -12.07407 -11.75614 -11.59837 -11.56590 -11.46121 -11.06495 -10.80695 -10.67746 -10.55592 -10.54778 -10.48375 -10.45965 -10.29517 -10.09860 -9.32717 -8.91493 -8.81656 -8.66278 -8.28119 -7.65895 -6.29218 -4.37607 1.64849 3.19688 3.28629 3.32110 3.78350 3.83062 4.26933 4.70471 4.79982 4.98560 5.18971 5.23465 5.38985 5.44754 5.48797 5.53307 5.57209 5.74720 5.80099 5.80535 5.87388 5.92184 6.06407 6.07380 6.10691 6.15144 6.27991 6.40338 6.44322 6.53010 6.63216 6.70316 6.79696 6.81265 6.88121 6.91973 7.09214 7.29524 7.41354 7.74037 8.01241 8.34660 8.65544 8.88500 9.31548 9.44557 10.78572 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.004638 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.717315 B = 6035.762209 C = 6552.447937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.036 4.036 3 C -0.218 4.218 4 C 0.537 3.463 5 O -0.530 6.530 6 N -0.608 5.608 7 C 0.103 3.897 8 C -0.118 4.118 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.537 4.537 12 H 0.067 0.933 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.105 3.895 20 C -0.028 4.028 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.386 0.614 33 H 0.270 0.730 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 -5.509 -1.870 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.038 4.038 3 C -0.239 4.239 4 C 0.329 3.671 5 O -0.411 6.411 6 N -0.340 5.340 7 C -0.020 4.020 8 C -0.156 4.156 9 C 0.207 3.793 10 O -0.397 6.397 11 C -0.575 4.575 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.017 4.017 20 C -0.028 4.028 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.199 4.199 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.275 -5.880 -1.858 15.550 hybrid contribution 1.385 -0.034 -0.249 1.408 sum -12.890 -5.914 -2.108 14.338 Atomic orbital electron populations 1.21045 0.91654 1.03029 1.02579 1.22534 0.95295 0.94637 0.91342 1.22461 0.94022 0.98333 1.09054 1.18029 0.87652 0.82631 0.78788 1.90884 1.71030 1.29414 1.49815 1.48678 1.09819 1.05448 1.70091 1.22289 0.96517 0.83439 0.99799 1.22754 0.94467 0.98874 0.99548 1.19493 0.91883 0.85861 0.82051 1.86070 1.54075 1.69596 1.29984 1.21578 0.91266 1.39554 1.05089 0.91503 1.25071 0.99598 0.93494 0.95075 1.69585 1.26806 1.39496 1.17664 0.86352 0.82441 0.78037 0.80110 1.19579 1.20719 1.20764 1.22948 0.76485 1.00934 1.01338 1.19577 0.94437 0.90828 0.97947 1.21903 0.98679 1.01981 0.93994 1.22094 0.97544 1.02389 0.94690 1.22082 0.98723 0.98167 1.00904 0.90670 0.91542 0.90797 0.86142 0.92147 0.91950 0.90636 0.90626 0.76239 0.91991 0.91964 0.91792 0.91620 0.92242 0.95432 0.91898 0.95755 0.91909 0.92812 0.92840 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 9.29 36.01 0.33 -0.88 16 2 C -0.04 -0.48 4.92 -101.17 -0.50 -0.98 16 3 C -0.22 -3.30 8.46 -37.81 -0.32 -3.62 16 4 C 0.54 10.32 5.91 -12.66 -0.07 10.25 16 5 O -0.53 -11.07 8.68 5.27 0.05 -11.03 16 6 N -0.61 -12.44 3.33 -171.91 -0.57 -13.01 16 7 C 0.10 1.83 6.51 -2.53 -0.02 1.81 16 8 C -0.12 -2.37 6.23 -24.58 -0.15 -2.52 16 9 C 0.25 6.00 0.86 -89.94 -0.08 5.92 16 10 O -0.59 -14.93 13.07 -35.23 -0.46 -15.39 16 11 C -0.54 -14.05 8.12 -34.44 -0.28 -14.33 16 12 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 13 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 14 N -0.90 -23.90 10.97 55.43 0.61 -23.29 16 15 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.10 2.53 5.54 -3.06 -0.02 2.51 16 20 C -0.03 -0.39 0.75 -155.66 -0.12 -0.51 16 21 C -0.11 -1.68 7.58 37.16 0.28 -1.40 16 22 C -0.11 -1.75 7.58 37.16 0.28 -1.47 16 23 C -0.14 -1.55 6.74 37.16 0.25 -1.30 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 26 H 0.07 0.62 5.91 -51.93 -0.31 0.32 16 27 H 0.12 1.58 6.87 -52.48 -0.36 1.22 16 28 H 0.06 0.88 7.17 -51.93 -0.37 0.51 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.39 10.13 6.98 45.56 0.32 10.45 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.06 1.65 8.07 -51.93 -0.42 1.23 16 35 H 0.06 1.67 7.82 -51.93 -0.41 1.27 16 36 H 0.06 1.17 5.59 -51.93 -0.29 0.88 16 37 H 0.06 0.99 7.03 -51.93 -0.37 0.62 16 38 H 0.03 0.36 7.77 -51.93 -0.40 -0.04 16 39 H 0.06 1.09 6.70 -51.93 -0.35 0.74 16 40 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 41 H 0.06 1.13 4.93 -51.93 -0.26 0.87 16 42 H 0.05 0.52 7.53 -51.93 -0.39 0.13 16 43 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -27.90 332.84 -7.33 -35.23 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.45 Total: 11.79 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.50 Total: -4.76 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.04 Total: -36.30 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.41 Total: -26.42 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.90 -7.33 -35.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.081 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds