Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.50700 * 109.46856 * 240.00212 * 2 1 3 5 5 O 1.20824 * 120.00311 * 22.24748 * 4 2 1 6 6 O 1.34233 * 119.99822 * 202.24883 * 4 2 1 7 7 C 1.45191 * 116.99978 * 185.08724 * 6 4 2 8 8 C 1.53001 * 109.47461 * 184.61176 * 7 6 4 9 9 C 1.50701 * 115.55470 * 184.39002 * 8 7 6 10 10 H 1.08007 * 119.99733 * 144.43254 * 9 8 7 11 11 C 1.37877 * 119.99958 * 324.43323 * 9 8 7 12 12 N 1.31517 * 119.99773 * 167.75158 * 11 9 8 13 13 Si 1.86802 * 120.00028 * 347.75078 * 11 9 8 14 14 H 1.48500 * 109.46814 * 95.54937 * 13 11 9 15 15 H 1.48493 * 109.46866 * 215.55248 * 13 11 9 16 16 H 1.48502 * 109.46897 * 335.55100 * 13 11 9 17 17 C 1.53004 * 117.49585 * 38.71831 * 8 7 6 18 18 C 1.53005 * 117.49344 * 330.06326 * 8 7 6 19 19 N 1.46897 * 109.47059 * 120.00481 * 2 1 3 20 20 C 1.48556 * 111.00596 * 60.39276 * 19 2 1 21 21 C 1.54378 * 104.70101 * 200.90302 * 20 19 2 22 22 C 1.54568 * 104.91095 * 23.88128 * 21 20 19 23 23 C 1.48565 * 110.99634 * 304.97099 * 19 2 1 24 24 H 1.08999 * 109.47171 * 301.55883 * 1 2 3 25 25 H 1.09001 * 109.47467 * 61.55493 * 1 2 3 26 26 H 1.08999 * 109.47271 * 181.55550 * 1 2 3 27 27 H 1.08999 * 109.47006 * 174.63320 * 3 2 1 28 28 H 1.09000 * 109.46982 * 294.62984 * 3 2 1 29 29 H 1.08999 * 109.46938 * 54.63413 * 3 2 1 30 30 H 1.09001 * 109.47484 * 304.60938 * 7 6 4 31 31 H 1.09003 * 109.47868 * 64.61142 * 7 6 4 32 32 H 0.96996 * 119.99495 * 185.00759 * 12 11 9 33 33 H 1.08998 * 117.49999 * 0.02562 * 17 8 7 34 34 H 1.09004 * 117.50148 * 145.02183 * 17 8 7 35 35 H 1.09002 * 117.49589 * 214.97126 * 18 8 7 36 36 H 1.08996 * 117.50032 * 359.97438 * 18 8 7 37 37 H 1.09007 * 110.40758 * 319.73683 * 20 19 2 38 38 H 1.08992 * 110.41276 * 82.05769 * 20 19 2 39 39 H 1.08999 * 110.32538 * 142.80472 * 21 20 19 40 40 H 1.08999 * 110.32662 * 265.01148 * 21 20 19 41 41 H 1.09002 * 110.29953 * 241.08007 * 22 21 20 42 42 H 1.08998 * 110.40733 * 118.94075 * 22 21 20 43 43 H 1.08994 * 110.41467 * 277.82101 * 23 19 2 44 44 H 1.09000 * 110.40932 * 40.14675 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3206 -0.8135 -2.2014 6 8 3.2704 -1.2286 -1.2479 7 6 3.7291 -1.7981 -2.5022 8 6 5.1044 -2.4371 -2.2996 9 6 5.7577 -2.9819 -3.5436 10 1 6.8289 -2.9158 -3.6642 11 6 4.9878 -3.5649 -4.5277 12 7 5.5112 -3.8210 -5.7067 13 14 3.2013 -3.9910 -4.1863 14 1 2.3292 -2.8896 -4.6674 15 1 2.8482 -5.2476 -4.8944 16 1 3.0067 -4.1745 -2.7256 17 6 5.3496 -3.1849 -0.9875 18 6 6.0157 -1.8284 -1.2318 19 7 2.0196 -0.6926 1.1994 20 6 1.5512 -2.1020 1.2289 21 6 1.6579 -2.5193 2.7114 22 6 1.5892 -1.1939 3.5036 23 6 1.4476 -0.0918 2.4318 24 1 -0.3633 0.5378 0.8757 25 1 -0.3634 0.4895 -0.9036 26 1 -0.3634 -1.0273 0.0279 27 1 3.1257 1.4440 0.0961 28 1 1.7573 1.9278 -0.9342 29 1 1.6003 1.9833 0.8380 30 1 3.0218 -2.5569 -2.8370 31 1 3.8010 -1.0117 -3.2536 32 1 4.9521 -4.1635 -6.4215 33 1 4.5309 -3.2220 -0.2688 34 1 5.9836 -4.0708 -1.0239 35 1 7.0877 -1.8226 -1.4289 36 1 5.6355 -0.9727 -0.6740 37 1 0.5173 -2.1661 0.8895 38 1 2.1931 -2.7291 0.6103 39 1 0.8252 -3.1682 2.9830 40 1 2.6069 -3.0228 2.8957 41 1 2.5045 -1.0484 4.0775 42 1 0.7236 -1.1913 4.1659 43 1 2.0128 0.7942 2.7206 44 1 0.3981 0.1605 2.2799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849776114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -36.670627 kcal Electronic energy + Delta-G solvation = -23949.281242 eV Core-core repulsion = 20675.449786 eV Total energy + Delta-G solvation = -3273.831456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79266 -38.98317 -37.16425 -35.29112 -34.49376 -32.25172 -29.53065 -29.00729 -27.93730 -27.41286 -25.51379 -23.79640 -21.75606 -21.30478 -20.69324 -19.24317 -19.09798 -17.74578 -16.87698 -16.27572 -16.00711 -15.67215 -15.37881 -14.59837 -14.36170 -13.99655 -13.96355 -13.46380 -13.19652 -12.95424 -12.77157 -12.52703 -12.20703 -12.11142 -11.87608 -11.72931 -11.57437 -11.46298 -11.34115 -11.22344 -11.08081 -10.72660 -10.51357 -10.45303 -10.34881 -10.12213 -9.65841 -9.47271 -9.19559 -8.68291 -8.57760 -8.31896 -6.22527 -4.17412 2.45052 3.01876 3.24803 3.33204 3.35618 3.70954 4.28217 4.43996 4.47723 4.68386 4.74558 4.76525 4.86462 5.01914 5.08124 5.29480 5.36314 5.39222 5.42580 5.51381 5.57250 5.58784 5.65502 5.69010 5.77620 5.85776 5.87612 5.94789 5.98903 6.01342 6.03846 6.12854 6.29200 6.58096 6.66859 6.68679 6.73608 6.81367 6.99158 7.06750 7.30013 7.65652 8.14348 8.43214 8.81240 9.38756 10.88143 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.005825 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.982085 B = 4805.470817 C = 5120.339490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 C -0.136 4.136 4 C 0.467 3.533 5 O -0.514 6.514 6 O -0.329 6.329 7 C 0.083 3.917 8 C 0.003 3.997 9 C -0.482 4.482 10 H 0.085 0.915 11 C 0.078 3.922 12 N -0.886 5.886 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.260 1.260 17 C -0.197 4.197 18 C -0.175 4.175 19 N -0.483 5.483 20 C 0.017 3.983 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.024 3.976 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.268 0.732 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 7.913 17.424 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.194 4.194 4 C 0.309 3.691 5 O -0.402 6.402 6 O -0.244 6.244 7 C 0.010 3.990 8 C 0.002 3.998 9 C -0.519 4.519 10 H 0.103 0.897 11 C -0.126 4.126 12 N -0.522 5.522 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.218 1.218 16 H -0.186 1.186 17 C -0.235 4.235 18 C -0.212 4.212 19 N -0.208 5.208 20 C -0.111 4.111 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.104 4.104 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.145 7.748 16.874 21.158 hybrid contribution -1.928 -0.376 -0.213 1.976 sum -12.073 7.371 16.661 21.856 Atomic orbital electron populations 1.22402 0.94021 1.03417 1.03641 1.21031 0.93954 0.95478 0.87975 1.21815 1.03284 0.91513 1.02767 1.23291 0.80875 0.76122 0.88802 1.90662 1.57667 1.55265 1.36654 1.86565 1.30487 1.67859 1.39476 1.23528 0.96248 0.97091 0.82100 1.19347 0.90147 0.99222 0.91046 1.20303 0.95433 1.37051 0.99103 0.89665 1.24998 0.98213 0.94558 0.94783 1.69857 1.36432 1.44035 1.01832 0.87125 0.85496 0.78276 0.78621 1.20057 1.21847 1.18619 1.23069 1.02936 0.94976 1.02506 1.22721 0.97858 0.96156 1.04449 1.65728 1.53104 1.01917 1.00065 1.23347 0.99471 0.90247 0.98020 1.22294 1.02538 0.97259 0.93750 1.22318 1.02137 0.94240 0.97298 1.23293 0.98606 0.98398 0.90083 0.90685 0.90355 0.91563 0.90209 0.91428 0.91065 0.91883 0.90928 0.92140 0.90970 0.89986 0.90213 0.90005 0.93274 0.89341 0.91440 0.90614 0.90860 0.91490 0.89786 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 7.26 37.16 0.27 -1.80 16 2 C 0.11 1.46 0.67 -132.76 -0.09 1.38 16 3 C -0.14 -1.55 8.31 37.16 0.31 -1.24 16 4 C 0.47 8.73 5.80 36.01 0.21 8.94 16 5 O -0.51 -11.04 15.69 -18.75 -0.29 -11.33 16 6 O -0.33 -6.77 7.84 -39.27 -0.31 -7.08 16 7 C 0.08 1.96 4.26 37.16 0.16 2.11 16 8 C 0.00 0.08 1.84 -155.65 -0.29 -0.20 16 9 C -0.48 -13.63 9.57 -34.44 -0.33 -13.96 16 10 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 11 C 0.08 2.27 5.42 -17.82 -0.10 2.17 16 12 N -0.89 -26.79 13.95 55.43 0.77 -26.01 16 13 Si 0.87 22.54 24.21 -169.99 -4.11 18.42 16 14 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.26 -6.53 6.40 56.52 0.36 -6.17 16 17 C -0.20 -4.32 9.66 -26.69 -0.26 -4.58 16 18 C -0.17 -3.73 9.63 -26.69 -0.26 -3.98 16 19 N -0.48 -6.21 4.99 -215.71 -1.08 -7.28 16 20 C 0.02 0.22 5.51 -2.18 -0.01 0.21 16 21 C -0.12 -1.22 7.02 -25.19 -0.18 -1.40 16 22 C -0.12 -1.05 7.01 -25.18 -0.18 -1.22 16 23 C 0.02 0.22 5.38 -2.18 -0.01 0.21 16 24 H 0.07 0.67 6.03 -51.93 -0.31 0.36 16 25 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16 26 H 0.07 0.82 6.00 -51.93 -0.31 0.51 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 30 H 0.06 1.60 2.38 -51.93 -0.12 1.47 16 31 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 32 H 0.27 7.60 8.32 -40.82 -0.34 7.27 16 33 H 0.07 1.50 7.80 -51.93 -0.41 1.10 16 34 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.08 1.63 7.52 -51.93 -0.39 1.24 16 37 H 0.05 0.62 5.65 -51.93 -0.29 0.33 16 38 H 0.09 1.40 7.66 -51.93 -0.40 1.00 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 44 H 0.05 0.44 5.45 -51.93 -0.28 0.16 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -31.38 335.82 -7.82 -39.20 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.12 Total: 2.39 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.75 Total: -13.37 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: -0.30 Total: -33.29 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.60 Total: -18.41 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.11 Total: 18.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.38 -7.82 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849776114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.534 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds