Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.32034 * 2 1 4 4 C 1.54751 * 110.45400 * 122.28011 * 2 1 3 5 5 C 1.53461 * 103.63052 * 142.69090 * 4 2 1 6 6 C 1.52644 * 115.85183 * 129.04560 * 5 4 2 7 7 C 1.53985 * 86.73485 * 142.78869 * 6 5 4 8 8 N 1.46500 * 113.58012 * 220.81194 * 7 6 5 9 9 C 1.34783 * 120.00143 * 252.72916 * 8 7 6 10 10 O 1.21281 * 119.99727 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00086 * 179.97438 * 9 8 7 12 12 C 1.52992 * 109.47151 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47078 * 180.02562 * 12 11 9 14 14 C 1.50702 * 109.46931 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00131 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99789 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47367 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47069 * 120.00024 * 18 16 14 21 21 H 1.48498 * 109.47406 * 240.00092 * 18 16 14 22 22 C 1.52667 * 115.81669 * 230.40095 * 5 4 2 23 23 C 1.53436 * 105.20899 * 359.69017 * 5 4 2 24 24 O 1.44522 * 110.36230 * 237.77965 * 2 1 3 25 25 H 1.09010 * 109.46991 * 180.76727 * 1 2 3 26 26 H 1.08999 * 109.47642 * 300.76132 * 1 2 3 27 27 H 1.08994 * 109.47276 * 60.76833 * 1 2 3 28 28 H 1.08998 * 110.59360 * 24.15179 * 4 2 1 29 29 H 1.09008 * 110.59237 * 261.22204 * 4 2 1 30 30 H 1.09005 * 113.66544 * 257.24983 * 6 5 4 31 31 H 1.09002 * 113.67141 * 28.32657 * 6 5 4 32 32 H 1.09001 * 113.65262 * 90.03292 * 7 6 5 33 33 H 0.97001 * 119.99823 * 72.71754 * 8 7 6 34 34 H 1.09007 * 109.47153 * 299.99901 * 11 9 8 35 35 H 1.08999 * 109.47192 * 59.99535 * 11 9 8 36 36 H 1.09000 * 109.47321 * 299.99756 * 12 11 9 37 37 H 1.08999 * 109.47170 * 59.99867 * 12 11 9 38 38 H 1.09001 * 109.47115 * 299.99311 * 13 12 11 39 39 H 1.08999 * 109.47245 * 59.99893 * 13 12 11 40 40 H 0.97002 * 119.99737 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.66815 * 331.63411 * 22 5 4 42 42 H 1.08999 * 113.67299 * 102.62584 * 22 5 4 43 43 H 1.09002 * 110.41928 * 95.55843 * 23 5 4 44 44 H 1.08993 * 110.42522 * 217.91314 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0222 0.0000 4 6 2.0707 -0.7744 1.2259 5 6 3.3085 -1.4982 0.6791 6 6 4.5932 -1.3206 1.4842 7 6 4.9033 -2.7908 1.1473 8 7 5.4694 -3.5425 2.2702 9 6 6.7739 -3.8812 2.2651 10 8 7.4791 -3.5640 1.3307 11 6 7.3563 -4.6539 3.4204 12 6 8.8435 -4.9074 3.1663 13 6 9.4347 -5.6925 4.3390 14 6 10.8995 -5.9427 4.0884 15 1 11.3624 -5.5787 3.1831 16 6 11.6487 -6.6366 5.0149 17 7 11.0851 -7.0794 6.1175 18 14 13.4642 -6.9474 4.7040 19 1 13.8526 -6.3503 3.4009 20 1 14.2656 -6.3282 5.7902 21 1 13.7180 -8.4102 4.6739 22 6 3.3871 -2.9945 0.9717 23 6 3.3858 -1.1013 -0.8010 24 8 2.0328 -0.7224 -1.1463 25 1 -0.3633 -1.0277 0.0138 26 1 -0.3634 0.5256 0.8830 27 1 -0.3633 0.5018 -0.8967 28 1 1.3324 -1.4929 1.5817 29 1 2.3506 -0.0845 2.0221 30 1 5.2934 -0.6128 1.0404 31 1 4.4231 -1.1413 2.5458 32 1 5.4700 -2.9180 0.2250 33 1 4.9053 -3.7963 3.0174 34 1 7.2371 -4.0791 4.3389 35 1 6.8371 -5.6072 3.5184 36 1 8.9624 -5.4824 2.2479 37 1 9.3630 -3.9542 3.0680 38 1 9.3159 -5.1179 5.2576 39 1 8.9152 -6.6457 4.4368 40 1 11.6121 -7.5678 6.7692 41 1 2.8760 -3.2885 1.8885 42 1 3.1240 -3.6214 0.1198 43 1 4.0628 -0.2574 -0.9336 44 1 3.7117 -1.9479 -1.4053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888715905.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -90.040027 kcal Electronic energy + Delta-G solvation = -21541.097675 eV Core-core repulsion = 18264.951948 eV Total energy + Delta-G solvation = -3276.145727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14960 -39.31204 -37.43623 -34.17427 -33.50463 -32.47312 -31.97361 -29.20049 -27.68138 -26.32142 -26.21678 -24.12275 -22.48957 -21.43146 -20.54856 -19.84543 -19.05554 -16.84449 -16.63903 -16.45516 -16.04456 -15.81642 -15.54443 -15.17358 -14.69698 -14.40947 -13.85493 -13.57722 -13.39073 -13.30891 -12.80176 -12.64606 -12.44204 -12.31230 -12.26438 -11.82914 -11.72147 -11.51229 -11.30299 -11.15368 -10.81620 -10.64390 -10.62365 -10.57214 -10.50049 -10.04554 -9.66987 -9.66592 -9.24856 -8.98949 -8.98299 -8.31752 -5.97228 -3.98388 2.89997 3.29283 3.34018 3.41295 3.47250 3.49016 3.97896 4.04365 4.27789 4.49021 4.50105 4.56268 4.60912 4.77599 4.96824 5.03353 5.16292 5.22105 5.24051 5.35887 5.38149 5.38917 5.40394 5.49921 5.54816 5.60875 5.69467 5.71882 5.73505 5.74883 5.80714 5.98316 6.28306 6.48464 6.53713 6.73974 6.94557 7.17484 7.61272 7.72261 7.84667 8.03751 8.45927 8.48306 9.09021 9.65525 11.14308 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.061627 B = 0.002281 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.236301 B =12272.313855 C =12502.683501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.137 4.137 7 C 0.124 3.876 8 N -0.730 5.730 9 C 0.513 3.487 10 O -0.538 6.538 11 C -0.139 4.139 12 C -0.095 4.095 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.129 4.129 23 C 0.067 3.933 24 O -0.373 6.373 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.400 0.600 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 13.406 -9.004 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.172 4.172 5 C -0.116 4.116 6 C -0.176 4.176 7 C 0.018 3.982 8 N -0.382 5.382 9 C 0.301 3.699 10 O -0.414 6.414 11 C -0.179 4.179 12 C -0.133 4.133 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.167 4.167 23 C -0.009 4.009 24 O -0.292 6.292 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.234 0.766 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.827 13.483 -9.732 28.241 hybrid contribution 0.798 -0.279 0.581 1.025 sum -22.029 13.205 -9.151 27.265 Atomic orbital electron populations 1.21804 0.93267 1.02919 1.02410 1.23044 0.95238 0.95409 0.85234 0.91466 1.22854 0.96691 0.99499 0.98123 1.22288 0.95983 0.96991 0.96332 1.23406 0.95610 0.98042 1.00566 1.22497 0.93116 0.90762 0.91777 1.46118 1.10820 1.58312 1.22977 1.21315 0.81200 0.78652 0.88690 1.90668 1.59512 1.54324 1.36881 1.21852 1.00262 0.99977 0.95828 1.21441 0.89965 1.00995 1.00904 1.19142 0.95458 0.94804 0.92345 1.21317 0.94699 1.34601 1.04881 0.92518 1.25032 0.98530 0.95859 0.95198 1.69973 1.36012 1.38270 1.09492 0.86534 0.85383 0.77846 0.78256 1.19681 1.21060 1.21049 1.23276 0.95760 0.94966 1.02732 1.23111 0.84654 1.00165 0.92996 1.89183 1.27552 1.74437 1.38032 0.91776 0.91173 0.91906 0.90218 0.90230 0.90633 0.89240 0.86861 0.76617 0.89398 0.89376 0.92723 0.92730 0.96617 0.96609 0.93142 0.89245 0.90348 0.91642 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.53 37.15 0.35 -0.52 16 2 C 0.07 0.50 3.94 -25.81 -0.10 0.40 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.88 6.15 -25.57 -0.16 -1.03 16 5 C -0.12 -0.87 1.17 -154.41 -0.18 -1.05 16 6 C -0.14 -1.17 7.09 -26.40 -0.19 -1.36 16 7 C 0.12 1.25 4.11 -66.92 -0.28 0.97 16 8 N -0.73 -8.20 5.35 -52.82 -0.28 -8.49 16 9 C 0.51 8.10 7.83 -10.98 -0.09 8.01 16 10 O -0.54 -10.67 15.58 5.56 0.09 -10.58 16 11 C -0.14 -2.28 5.70 -27.89 -0.16 -2.44 16 12 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.13 -0.99 6.97 -26.39 -0.18 -1.17 16 23 C 0.07 0.56 6.90 37.38 0.26 0.82 16 24 O -0.37 -3.66 11.35 -35.23 -0.40 -4.06 16 25 H 0.06 0.40 8.13 -51.92 -0.42 -0.02 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.49 7.70 -51.93 -0.40 0.09 16 29 H 0.08 0.46 7.97 -51.92 -0.41 0.04 16 30 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.36 7.46 -51.93 -0.39 0.97 16 33 H 0.40 3.36 8.73 -40.82 -0.36 3.01 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 43 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 44 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -33.79 357.36 -8.71 -42.50 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.83 Total: -2.38 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.39 Total: -13.04 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.45 Total: -34.92 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.31 Total: -14.64 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.79 -8.71 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888715905.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.542 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds