Wall clock time and date at job start Tue Mar 31 2020 05:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99820 * 2 1 4 4 C 1.53003 * 109.47184 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46988 * 239.99690 * 3 2 1 6 6 C 1.53000 * 109.47227 * 119.99736 * 3 2 1 7 7 C 1.50705 * 109.47239 * 179.97438 * 6 3 2 8 8 O 1.20824 * 119.99694 * 0.02562 * 7 6 3 9 9 O 1.34224 * 119.99921 * 180.02562 * 7 6 3 10 10 C 1.45205 * 116.99833 * 180.02562 * 9 7 6 11 11 C 1.53350 * 109.41616 * 270.12530 * 10 9 7 12 12 C 1.53198 * 109.14641 * 178.67682 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45809 * 149.99841 * 10 9 7 24 24 H 1.08002 * 120.00335 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00134 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00335 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46857 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46962 * 300.00305 * 4 3 2 29 29 H 1.08997 * 109.46838 * 60.00281 * 4 3 2 30 30 H 1.08997 * 109.47222 * 299.99698 * 5 3 2 31 31 H 1.09005 * 109.46673 * 60.00237 * 5 3 2 32 32 H 1.09004 * 109.46763 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46819 * 59.99957 * 6 3 2 34 34 H 1.08997 * 109.47341 * 300.00053 * 6 3 2 35 35 H 1.08997 * 109.45868 * 30.02863 * 10 9 7 36 36 H 1.08996 * 109.68537 * 58.71446 * 11 10 9 37 37 H 1.09000 * 109.47180 * 298.51362 * 11 10 9 38 38 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 39 39 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 40 40 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 42 42 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 43 43 H 1.08996 * 109.49900 * 61.43335 * 23 10 9 44 44 H 1.08999 * 109.52516 * 301.35175 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9430 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5458 3.4759 0.3427 9 8 4.5363 2.9815 2.2554 10 6 5.2284 4.2563 2.1895 11 6 6.5543 4.0784 1.4399 12 6 7.2636 5.4330 1.3452 13 7 7.4028 5.9927 2.6965 14 6 8.6275 6.3861 3.1660 15 1 9.5250 5.9111 2.7979 16 6 8.7156 7.3955 4.1147 17 7 7.6914 8.1959 4.3212 18 14 10.2879 7.6179 5.0986 19 1 11.1921 8.5529 4.3821 20 1 9.9604 8.1736 6.4362 21 1 10.9610 6.3041 5.2597 22 6 6.2031 6.1218 3.5347 23 6 5.5039 4.7607 3.6079 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4428 2.4101 -0.8908 29 1 0.4422 2.4105 0.8891 30 1 3.6515 0.5577 -1.2492 31 1 2.3164 1.3284 -2.1393 32 1 3.4877 2.3304 -1.2495 33 1 3.6513 0.5578 1.2493 34 1 2.3164 1.3285 2.1392 35 1 4.6074 4.9797 1.6611 36 1 6.3609 3.6981 0.4369 37 1 7.1860 3.3740 1.9811 38 1 6.6749 6.1113 0.7276 39 1 8.2502 5.2986 0.9019 40 1 7.7528 8.9010 4.9844 41 1 6.4901 6.4395 4.5371 42 1 5.5290 6.8582 3.0970 43 1 6.1453 4.0498 4.1287 44 1 4.5623 4.8639 4.1472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892864285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:56 Heat of formation + Delta-G solvation = -55.589534 kcal Electronic energy + Delta-G solvation = -22778.651715 eV Core-core repulsion = 19503.999874 eV Total energy + Delta-G solvation = -3274.651842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67077 -38.36177 -36.97351 -35.67149 -32.72106 -31.55346 -30.40051 -29.69405 -28.45538 -27.40952 -25.17194 -23.20013 -22.29140 -21.93467 -20.41523 -19.31348 -18.37322 -17.49477 -16.95129 -16.13444 -15.90462 -15.51765 -14.84844 -14.48856 -14.22419 -13.92638 -13.60322 -13.34701 -13.18421 -13.03478 -12.64238 -12.45649 -12.23021 -11.91252 -11.73161 -11.51761 -11.29386 -11.21342 -11.14455 -10.89071 -10.81034 -10.74474 -10.69594 -10.39040 -10.18907 -9.99950 -9.81782 -9.66827 -9.59266 -9.42275 -8.50548 -6.73798 -5.83059 -3.25598 2.01613 2.38912 2.97638 3.36367 3.43309 3.45924 4.46833 4.47435 4.55736 4.71419 5.00935 5.05982 5.17306 5.25333 5.36260 5.38352 5.39796 5.44645 5.53269 5.56518 5.65727 5.73679 5.84073 5.84745 5.93296 6.00827 6.21873 6.22563 6.26863 6.36413 6.40933 6.49162 6.50396 6.56669 6.58673 6.71736 6.89503 7.01162 7.27642 7.57157 7.76520 8.02996 8.40743 9.16593 9.79435 10.36141 11.26246 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048857 B = 0.003226 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.965213 B = 8676.480418 C = 8784.769740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.024 4.024 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.104 4.104 7 C 0.458 3.542 8 O -0.503 6.503 9 O -0.359 6.359 10 C 0.098 3.902 11 C -0.145 4.145 12 C 0.149 3.851 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.174 3.826 23 C -0.135 4.135 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.096 0.904 42 H 0.022 0.978 43 H 0.066 0.934 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 -15.131 -6.525 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.162 4.162 3 C -0.024 4.024 4 C -0.216 4.216 5 C -0.209 4.209 6 C -0.142 4.142 7 C 0.302 3.698 8 O -0.392 6.392 9 O -0.275 6.275 10 C 0.045 3.955 11 C -0.185 4.185 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.213 1.213 20 H -0.215 1.215 21 H -0.204 1.204 22 C 0.048 3.952 23 C -0.175 4.175 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.385 -14.706 -6.656 20.346 hybrid contribution 0.707 0.094 0.475 0.857 sum -11.678 -14.612 -6.181 19.700 Atomic orbital electron populations 1.24029 0.96144 1.02139 1.00866 1.22891 0.95910 0.97390 0.99968 1.19456 0.95002 0.93648 0.94315 1.22214 0.98653 0.99495 1.01189 1.22085 0.99290 1.03677 0.95835 1.21437 0.98726 0.93569 1.00439 1.23535 0.77544 0.88747 0.79976 1.90527 1.62921 1.50149 1.35637 1.86562 1.53272 1.41420 1.46283 1.22992 0.92132 0.81169 0.99244 1.22508 0.95896 1.01229 0.98839 1.20854 0.97875 0.90761 0.88306 1.44110 1.05119 1.72683 1.09624 1.19180 0.84783 1.13324 1.21096 0.91561 1.25068 0.97479 0.95333 1.01719 1.70017 1.30882 1.18295 1.35566 0.86281 0.82921 0.77873 0.79606 1.21343 1.21504 1.20429 1.20806 0.86761 0.89241 0.98403 1.22449 1.00574 1.01389 0.93074 0.87751 0.88655 0.87327 0.89599 0.92511 0.92968 0.93122 0.92723 0.89532 0.87883 0.87927 0.90346 0.92650 0.91457 0.96082 0.92165 0.93516 0.88607 0.95996 0.91507 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 13.70 29.02 0.40 -1.10 16 2 C -0.14 -1.19 8.76 -36.02 -0.32 -1.51 16 3 C -0.02 -0.24 0.74 -155.65 -0.11 -0.35 16 4 C -0.16 -1.67 6.83 37.16 0.25 -1.42 16 5 C -0.15 -1.61 8.16 37.16 0.30 -1.31 16 6 C -0.10 -1.08 4.86 -27.88 -0.14 -1.21 16 7 C 0.46 6.60 7.35 36.01 0.26 6.86 16 8 O -0.50 -8.20 10.57 -18.75 -0.20 -8.39 16 9 O -0.36 -5.88 9.88 -39.24 -0.39 -6.27 16 10 C 0.10 1.81 2.42 -26.53 -0.06 1.75 16 11 C -0.15 -2.71 5.75 -26.45 -0.15 -2.86 16 12 C 0.15 3.20 6.50 -3.71 -0.02 3.17 16 13 N -0.59 -14.94 2.99 -172.32 -0.52 -15.45 16 14 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.78 7.89 -52.48 -0.41 1.36 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 17 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 18 Si 0.90 21.51 29.59 -169.99 -5.03 16.49 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 23 C -0.14 -2.66 5.74 -26.61 -0.15 -2.81 16 24 H 0.10 0.80 5.69 -52.49 -0.30 0.50 16 25 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 26 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.09 1.12 5.52 -51.93 -0.29 0.83 16 28 H 0.06 0.55 7.50 -51.93 -0.39 0.16 16 29 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.13 5.52 -51.93 -0.29 0.84 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.53 7.16 -51.93 -0.37 1.16 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.10 2.52 6.06 -51.93 -0.31 2.20 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 342.76 15.07 5.17 5.17 Total: -1.00 -29.48 342.76 -7.70 -37.19 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.37 Total: 0.47 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 0.01 Total: -3.79 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.11 Total: -40.86 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.59 Total: -14.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.48 -7.70 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892864285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.404 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds