Wall clock time and date at job start Tue Mar 31 2020 05:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99820 * 2 1 4 4 C 1.53003 * 109.47184 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46988 * 239.99690 * 3 2 1 6 6 C 1.53000 * 109.47227 * 119.99736 * 3 2 1 7 7 C 1.50705 * 109.47239 * 179.97438 * 6 3 2 8 8 O 1.20824 * 119.99694 * 0.02562 * 7 6 3 9 9 O 1.34224 * 119.99921 * 180.02562 * 7 6 3 10 10 C 1.45205 * 116.99833 * 180.02562 * 9 7 6 11 11 C 1.53350 * 109.41616 * 270.12530 * 10 9 7 12 12 C 1.53198 * 109.14641 * 178.67682 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45809 * 149.99841 * 10 9 7 24 24 H 1.08002 * 120.00335 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00134 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00335 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46857 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46962 * 300.00305 * 4 3 2 29 29 H 1.08997 * 109.46838 * 60.00281 * 4 3 2 30 30 H 1.08997 * 109.47222 * 299.99698 * 5 3 2 31 31 H 1.09005 * 109.46673 * 60.00237 * 5 3 2 32 32 H 1.09004 * 109.46763 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46819 * 59.99957 * 6 3 2 34 34 H 1.08997 * 109.47341 * 300.00053 * 6 3 2 35 35 H 1.08997 * 109.45868 * 30.02863 * 10 9 7 36 36 H 1.08996 * 109.68537 * 58.71446 * 11 10 9 37 37 H 1.09000 * 109.47180 * 298.51362 * 11 10 9 38 38 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 39 39 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 40 40 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 42 42 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 43 43 H 1.08996 * 109.49900 * 61.43335 * 23 10 9 44 44 H 1.08999 * 109.52516 * 301.35175 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9430 1.3863 1.2493 7 6 3.6969 2.6912 1.2489 8 8 3.5458 3.4759 0.3427 9 8 4.5363 2.9815 2.2554 10 6 5.2284 4.2563 2.1895 11 6 6.5543 4.0784 1.4399 12 6 7.2636 5.4330 1.3452 13 7 7.4028 5.9927 2.6965 14 6 8.6275 6.3861 3.1660 15 1 9.5250 5.9111 2.7979 16 6 8.7156 7.3955 4.1147 17 7 7.6914 8.1959 4.3212 18 14 10.2879 7.6179 5.0986 19 1 11.1921 8.5529 4.3821 20 1 9.9604 8.1736 6.4362 21 1 10.9610 6.3041 5.2597 22 6 6.2031 6.1218 3.5347 23 6 5.5039 4.7607 3.6079 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4428 2.4101 -0.8908 29 1 0.4422 2.4105 0.8891 30 1 3.6515 0.5577 -1.2492 31 1 2.3164 1.3284 -2.1393 32 1 3.4877 2.3304 -1.2495 33 1 3.6513 0.5578 1.2493 34 1 2.3164 1.3285 2.1392 35 1 4.6074 4.9797 1.6611 36 1 6.3609 3.6981 0.4369 37 1 7.1860 3.3740 1.9811 38 1 6.6749 6.1113 0.7276 39 1 8.2502 5.2986 0.9019 40 1 7.7528 8.9010 4.9844 41 1 6.4901 6.4395 4.5371 42 1 5.5290 6.8582 3.0970 43 1 6.1453 4.0498 4.1287 44 1 4.5623 4.8639 4.1472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892864285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:55 Heat of formation + Delta-G solvation = -70.162218 kcal Electronic energy + Delta-G solvation = -22779.283634 eV Core-core repulsion = 19503.999874 eV Total energy + Delta-G solvation = -3275.283761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84887 -39.59483 -38.32575 -36.99335 -34.59743 -32.39905 -32.05373 -31.46240 -29.42451 -28.22732 -27.04537 -24.47449 -23.92647 -23.28617 -21.58679 -21.02393 -19.15440 -18.83588 -18.61127 -17.30819 -17.20494 -16.74876 -16.32338 -15.73097 -15.43792 -15.33314 -15.05301 -14.87412 -14.67128 -14.30042 -14.07072 -13.73257 -13.31824 -13.14703 -13.01597 -12.92060 -12.66391 -12.61195 -12.46776 -12.20225 -12.10793 -12.06434 -12.00354 -11.91651 -11.80476 -11.56012 -11.46257 -11.04835 -10.86861 -10.57069 -10.24220 -8.76857 -7.91558 -5.37629 1.26057 1.38001 1.47598 1.49133 1.59255 1.82289 2.50064 3.25172 3.51686 3.61806 3.77624 3.80374 3.85736 3.94552 4.09762 4.16907 4.33985 4.36711 4.47071 4.55465 4.60987 4.69207 4.72892 4.81133 4.83895 4.86726 4.94364 4.98211 5.03185 5.03482 5.08046 5.17272 5.21351 5.37186 5.41043 5.44386 5.59568 5.63740 5.75288 5.83057 5.96781 6.35257 6.84652 7.10022 7.78507 8.31646 9.16285 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048857 B = 0.003226 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.965213 B = 8676.480418 C = 8784.769740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.023 4.023 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.098 4.098 7 C 0.453 3.547 8 O -0.524 6.524 9 O -0.358 6.358 10 C 0.106 3.894 11 C -0.131 4.131 12 C 0.146 3.854 13 N -0.611 5.611 14 C -0.267 4.267 15 H 0.069 0.931 16 C -0.049 4.049 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.269 1.269 22 C 0.181 3.819 23 C -0.122 4.122 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.013 0.987 39 H 0.065 0.935 40 H 0.252 0.748 41 H 0.067 0.933 42 H 0.000 1.000 43 H 0.067 0.933 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.821 -17.714 -6.558 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.167 4.167 3 C -0.023 4.023 4 C -0.214 4.214 5 C -0.208 4.208 6 C -0.135 4.135 7 C 0.298 3.702 8 O -0.413 6.413 9 O -0.275 6.275 10 C 0.052 3.948 11 C -0.170 4.170 12 C 0.020 3.980 13 N -0.334 5.334 14 C -0.397 4.397 15 H 0.087 0.913 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.194 1.194 22 C 0.055 3.945 23 C -0.161 4.161 24 H 0.119 0.881 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.835 -17.318 -6.713 22.577 hybrid contribution 0.755 0.897 0.382 1.233 sum -12.080 -16.421 -6.331 21.346 Atomic orbital electron populations 1.24184 0.96090 1.02816 0.99668 1.22844 0.96025 0.96827 1.00985 1.19444 0.94729 0.94407 0.93695 1.22175 0.98769 0.98519 1.01949 1.22040 0.99542 1.02603 0.96575 1.21601 0.98954 0.91496 1.01446 1.24442 0.76917 0.89854 0.78978 1.90551 1.63333 1.51148 1.36286 1.86561 1.53800 1.39825 1.47356 1.22609 0.92076 0.82172 0.97946 1.22308 0.95647 0.99220 0.99856 1.20950 0.98483 0.91935 0.86594 1.44369 1.04872 1.72992 1.11192 1.19520 0.85781 1.13201 1.21227 0.91299 1.25850 1.00574 0.95216 1.02797 1.70171 1.32874 1.18910 1.36154 0.85237 0.79246 0.77968 0.77740 1.21129 1.21698 1.19392 1.20577 0.86355 0.91156 0.96431 1.22165 1.00902 0.98739 0.94301 0.88098 0.87049 0.85728 0.92429 0.91936 0.92077 0.91895 0.92348 0.92277 0.85597 0.86103 0.91764 0.91060 0.91222 0.96912 0.91682 0.93882 0.91426 0.98223 0.91452 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 13.70 67.79 0.93 -1.42 16 2 C -0.15 -1.99 8.76 25.65 0.22 -1.76 16 3 C -0.02 -0.40 0.74 -52.92 -0.04 -0.44 16 4 C -0.16 -3.12 6.83 71.98 0.49 -2.63 16 5 C -0.15 -2.96 8.16 71.98 0.59 -2.37 16 6 C -0.10 -1.76 4.86 29.85 0.15 -1.61 16 7 C 0.45 12.36 7.35 71.24 0.52 12.88 16 8 O -0.52 -16.87 10.57 21.97 0.23 -16.63 16 9 O -0.36 -11.14 9.88 -51.36 -0.51 -11.65 16 10 C 0.11 3.86 2.42 30.73 0.07 3.93 16 11 C -0.13 -4.76 5.75 30.78 0.18 -4.59 16 12 C 0.15 6.31 6.50 86.36 0.56 6.87 16 13 N -0.61 -31.26 2.99 -699.09 -2.09 -33.35 16 14 C -0.27 -14.77 9.58 84.03 0.81 -13.97 16 15 H 0.07 3.69 7.89 -2.91 -0.02 3.66 16 16 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 17 N -0.94 -55.25 11.20 21.65 0.24 -55.01 16 18 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C 0.18 8.84 5.30 86.36 0.46 9.30 16 23 C -0.12 -4.74 5.74 30.68 0.18 -4.56 16 24 H 0.10 1.30 5.69 -2.91 -0.02 1.29 16 25 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 26 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 27 H 0.06 1.49 5.52 -2.39 -0.01 1.48 16 28 H 0.06 1.13 7.50 -2.39 -0.02 1.11 16 29 H 0.06 1.07 7.50 -2.39 -0.02 1.05 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 1.51 5.52 -2.39 -0.01 1.49 16 33 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 2.52 7.16 -2.39 -0.02 2.51 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.06 2.70 7.93 -2.39 -0.02 2.68 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.07 3.68 6.06 -2.39 -0.01 3.66 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.07 342.76 6.39 -57.67 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.96 Total: 15.04 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.53 Total: -2.68 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.85 Total: -88.36 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.28 Total: -28.28 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.07 6.39 -57.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892864285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.488 kcal (2) G-P(sol) polarization free energy of solvation -64.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds