Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.08992 * 109.56033 * 60.20115 * 16 14 13 18 18 C 1.53157 * 109.55409 * 299.99544 * 16 14 13 19 19 C 1.53040 * 109.41545 * 181.54340 * 18 16 14 20 20 O 1.43036 * 109.44893 * 59.31625 * 19 18 16 21 21 C 1.42585 * 113.84956 * 301.27565 * 20 19 18 22 22 C 1.53429 * 113.56020 * 286.14100 * 21 20 19 23 23 C 1.53836 * 86.97287 * 220.03635 * 22 21 20 24 24 C 1.53386 * 113.63527 * 188.22046 * 21 20 19 25 25 C 1.52814 * 112.93921 * 57.10394 * 21 20 19 26 26 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 27 27 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 28 28 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 31 31 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 33 33 H 1.09004 * 109.47667 * 301.52019 * 18 16 14 34 34 H 1.08998 * 109.48186 * 61.54163 * 18 16 14 35 35 H 1.08994 * 109.47566 * 179.31496 * 19 18 16 36 36 H 1.09007 * 109.47078 * 299.32778 * 19 18 16 37 37 H 1.09004 * 113.62894 * 334.55782 * 22 21 20 38 38 H 1.09005 * 113.62988 * 105.51135 * 22 21 20 39 39 H 1.09004 * 113.60684 * 270.59370 * 23 22 21 40 40 H 1.09004 * 113.60518 * 139.72322 * 23 22 21 41 41 H 1.09004 * 113.63146 * 254.42048 * 24 21 20 42 42 H 1.08998 * 113.63167 * 25.27755 * 24 21 20 43 43 H 1.08996 * 109.56287 * 186.23161 * 25 21 20 44 44 H 1.09003 * 109.55927 * 65.88769 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3374 2.6371 -0.4322 16 6 0.0408 3.3485 -2.6505 17 1 0.0652 2.6269 -3.4670 18 6 1.0154 4.4920 -2.9477 19 6 0.5877 5.2038 -4.2332 20 8 -0.7379 5.7173 -4.0748 21 6 -1.7104 4.7194 -3.7723 22 6 -2.0774 3.8369 -4.9725 23 6 -3.5323 3.9105 -4.4779 24 6 -3.1535 5.2386 -3.8001 25 6 -1.3741 3.9226 -2.5124 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0619 2.9495 32 1 2.2719 2.1232 -1.9977 33 1 1.0072 5.2009 -2.1197 34 1 2.0208 4.0897 -3.0719 35 1 1.2736 6.0254 -4.4391 36 1 0.6070 4.4974 -5.0633 37 1 -1.9183 4.3213 -5.9359 38 1 -1.6500 2.8353 -4.9252 39 1 -3.7946 3.1206 -3.7741 40 1 -4.2610 4.0225 -5.2807 41 1 -3.5917 5.3646 -2.8101 42 1 -3.2915 6.1114 -4.4383 43 1 -2.0886 3.1080 -2.3942 44 1 -1.4187 4.5785 -1.6430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -81.948164 kcal Electronic energy + Delta-G solvation = -23345.879755 eV Core-core repulsion = 20070.084917 eV Total energy + Delta-G solvation = -3275.794838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.73857 -38.86761 -36.42305 -35.13414 -33.58946 -32.28023 -30.77729 -29.49150 -27.14937 -25.92802 -25.01110 -23.83082 -22.95553 -21.61169 -19.97755 -19.24196 -18.55748 -17.19739 -16.68836 -16.02483 -15.71608 -15.33808 -15.04373 -14.72398 -14.41427 -14.09822 -13.63166 -13.39993 -13.03958 -12.77219 -12.64553 -12.48722 -11.98163 -11.73047 -11.49263 -11.36185 -11.26785 -11.20410 -11.03663 -10.97482 -10.83191 -10.81706 -10.49421 -10.32858 -10.22859 -10.02977 -9.63803 -9.49500 -9.06163 -8.83788 -8.49806 -7.80794 -6.12868 -4.22493 3.24401 3.30008 3.30726 3.40151 3.71244 4.03124 4.34491 4.44668 4.49808 4.65121 4.74092 4.89832 4.98147 5.04966 5.18174 5.20873 5.40557 5.49061 5.55617 5.60288 5.65360 5.72734 5.75804 5.82152 5.90128 5.93201 6.16512 6.20405 6.22731 6.37598 6.39825 6.44700 6.65364 7.02937 7.19169 7.25634 7.36614 7.46776 7.61258 7.73170 7.90074 8.17942 8.68229 8.77542 9.15545 9.45206 10.92368 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028214 B = 0.004226 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.171740 B = 6623.704200 C = 7278.953746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.147 4.147 19 C 0.065 3.935 20 O -0.369 6.369 21 C 0.092 3.908 22 C -0.163 4.163 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.100 4.100 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 6.581 -14.136 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.132 4.132 17 H 0.108 0.892 18 C -0.185 4.185 19 C -0.012 4.012 20 O -0.288 6.288 21 C 0.052 3.948 22 C -0.201 4.201 23 C -0.177 4.177 24 C -0.159 4.159 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.907 6.630 -13.260 17.295 hybrid contribution 1.535 -0.400 -0.223 1.602 sum -7.372 6.230 -13.483 16.581 Atomic orbital electron populations 1.21831 0.98397 0.97961 1.01185 1.21930 0.92576 0.99896 1.02217 1.18764 0.94118 0.89141 0.81125 0.93392 1.21198 0.90763 1.39097 1.06274 0.92215 1.24881 0.98555 0.94807 0.95383 1.69883 1.35209 1.37509 1.09350 0.86527 0.84921 0.78307 0.77454 1.20191 1.21127 1.20185 1.46491 1.14793 1.55778 1.18430 1.20210 0.82772 0.79182 0.88770 1.90661 1.51405 1.60167 1.40443 1.21387 0.96397 0.97718 0.97654 0.89248 1.22155 0.99146 0.97749 0.99418 1.22525 0.84023 0.98692 0.95964 1.87920 1.16670 1.33471 1.90709 1.22767 0.88605 0.89331 0.94081 1.23534 0.97009 1.00685 0.98886 1.22717 0.96512 0.97874 1.00554 1.22989 0.93116 0.97992 1.01802 1.21613 0.95560 0.99910 0.96737 0.93165 0.94364 0.95911 0.95119 0.88325 0.92514 0.78124 0.90407 0.90140 0.88835 0.93149 0.89582 0.91142 0.89688 0.90987 0.90597 0.89319 0.90082 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.40 7.57 -51.93 -0.39 1.00 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.31 4.92 -54.93 -0.27 -14.58 16 14 C 0.51 9.73 5.74 -10.99 -0.06 9.67 16 15 O -0.55 -12.51 13.09 5.55 0.07 -12.44 16 16 C -0.11 -1.58 2.53 -91.53 -0.23 -1.81 16 17 H 0.09 1.14 7.62 -51.93 -0.40 0.75 16 18 C -0.15 -1.87 5.25 -26.63 -0.14 -2.01 16 19 C 0.06 0.71 6.74 37.18 0.25 0.96 16 20 O -0.37 -4.76 10.53 -35.23 -0.37 -5.13 16 21 C 0.09 1.09 1.16 -90.29 -0.10 0.98 16 22 C -0.16 -1.64 6.90 -26.07 -0.18 -1.82 16 23 C -0.14 -1.28 7.73 -25.86 -0.20 -1.48 16 24 C -0.12 -1.25 7.50 -26.09 -0.20 -1.45 16 25 C -0.10 -1.39 3.81 -26.66 -0.10 -1.49 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.04 0.82 5.66 -51.93 -0.29 0.53 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 6.82 7.99 -40.82 -0.33 6.49 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 0.94 7.62 -51.93 -0.40 0.55 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.49 7.83 -51.93 -0.41 0.09 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.71 7.56 -51.93 -0.39 0.31 16 39 H 0.08 0.79 7.61 -51.93 -0.40 0.39 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.13 7.31 -51.93 -0.38 0.75 16 44 H 0.08 1.30 7.97 -51.93 -0.41 0.88 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -29.62 337.95 -8.64 -38.27 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.43 Total: 7.75 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.34 Total: -10.42 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.36 Total: -38.58 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.30 Total: -17.57 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.62 -8.64 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.679 kcal (2) G-P(sol) polarization free energy of solvation -29.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds