Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 14 14 C 1.34775 * 120.00366 * 274.99782 * 13 3 2 15 15 O 1.21282 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00244 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.55132 * 299.99920 * 16 14 13 18 18 C 1.53154 * 109.55239 * 60.20676 * 16 14 13 19 19 C 1.53062 * 109.40171 * 178.37503 * 18 16 14 20 20 O 1.43046 * 109.52176 * 300.82404 * 19 18 16 21 21 C 1.42584 * 113.84676 * 58.68410 * 20 19 18 22 22 C 1.53421 * 113.56566 * 73.85426 * 21 20 19 23 23 C 1.53839 * 86.97698 * 89.48431 * 22 21 20 24 24 C 1.53398 * 113.62367 * 171.77132 * 21 20 19 25 25 C 1.52811 * 112.93494 * 302.88283 * 21 20 19 26 26 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 27 27 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 29 29 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 30 30 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99882 * 94.99976 * 13 3 2 33 33 H 1.08996 * 109.48250 * 298.45316 * 18 16 14 34 34 H 1.08997 * 109.48586 * 58.49835 * 18 16 14 35 35 H 1.08992 * 109.47409 * 180.78924 * 19 18 16 36 36 H 1.08995 * 109.39617 * 60.81806 * 19 18 16 37 37 H 1.09005 * 113.62897 * 204.01102 * 22 21 20 38 38 H 1.09003 * 113.62862 * 334.95877 * 22 21 20 39 39 H 1.09001 * 113.60560 * 270.60045 * 23 22 21 40 40 H 1.08996 * 113.67937 * 139.72991 * 23 22 21 41 41 H 1.09002 * 113.63067 * 25.09295 * 24 21 20 42 42 H 1.09000 * 113.63156 * 155.95418 * 24 21 20 43 43 H 1.08996 * 109.57266 * 294.12290 * 25 21 20 44 44 H 1.09005 * 109.56448 * 173.77770 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5539 -0.3520 -0.7595 11 1 6.3835 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 7 1.6522 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0365 3.3387 2.6544 17 1 0.0673 2.6157 3.4695 18 6 1.0038 4.4883 2.9517 19 6 0.5721 5.1961 4.2383 20 8 -0.7582 5.6988 4.0841 21 6 -1.7231 4.6932 3.7828 22 6 -2.0795 3.8060 4.9826 23 6 -3.1810 4.8293 5.3084 24 6 -3.1704 5.2006 3.8155 25 6 -1.3835 3.9012 2.5208 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0604 -2.9501 32 1 2.2717 2.1232 1.9978 33 1 2.0121 4.0927 3.0734 34 1 0.9891 5.1988 2.1252 35 1 1.2516 6.0232 4.4435 36 1 0.5996 4.4889 5.0672 37 1 -2.4634 2.8251 4.7019 38 1 -1.2939 3.7545 5.7366 39 1 -2.8479 5.6361 5.9612 40 1 -4.1156 4.3761 5.6387 41 1 -3.2624 6.2709 3.6308 42 1 -3.8555 4.6062 3.2110 43 1 -1.4358 4.5579 1.6525 44 1 -2.0916 3.0808 2.4032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897400097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -80.381744 kcal Electronic energy + Delta-G solvation = -23296.542308 eV Core-core repulsion = 20020.815395 eV Total energy + Delta-G solvation = -3275.726913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.71448 -38.89073 -36.25304 -35.12712 -33.59143 -32.28914 -30.79153 -29.68190 -27.18146 -25.92079 -25.30580 -23.31276 -22.99613 -21.50664 -19.87543 -19.24787 -19.08240 -17.24044 -16.26460 -16.04305 -15.66348 -15.33354 -15.00491 -14.58685 -14.42451 -14.16564 -13.77607 -13.53812 -13.18161 -12.77281 -12.65401 -12.49046 -11.95789 -11.71675 -11.51373 -11.41642 -11.25802 -11.04481 -10.98873 -10.93341 -10.86639 -10.80858 -10.54601 -10.31586 -10.21719 -9.98735 -9.63684 -9.45179 -9.04633 -8.81222 -8.50039 -7.79896 -6.12949 -4.22431 3.23064 3.30219 3.32022 3.41165 3.58337 4.06156 4.35113 4.42961 4.52506 4.68875 4.84029 4.88428 4.96401 5.05143 5.18300 5.26311 5.36413 5.49027 5.57094 5.59594 5.67676 5.73320 5.76540 5.84248 5.89620 5.95567 6.15550 6.20567 6.23210 6.38167 6.41682 6.45232 6.65787 7.03334 7.19669 7.23942 7.36992 7.47551 7.61794 7.73569 7.90460 8.18158 8.69019 8.78050 9.16583 9.45394 10.92340 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.004116 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.699757 B = 6801.422070 C = 7412.022969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.548 6.548 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.146 4.146 19 C 0.064 3.936 20 O -0.358 6.358 21 C 0.093 3.907 22 C -0.165 4.165 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 6.844 14.420 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.427 6.427 16 C -0.131 4.131 17 H 0.107 0.893 18 C -0.184 4.184 19 C -0.013 4.013 20 O -0.277 6.277 21 C 0.053 3.947 22 C -0.203 4.203 23 C -0.172 4.172 24 C -0.162 4.162 25 C -0.147 4.147 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.800 6.904 13.547 17.568 hybrid contribution 1.545 -0.427 0.197 1.614 sum -7.256 6.478 13.745 16.838 Atomic orbital electron populations 1.21832 0.98390 0.97952 1.01204 1.21929 0.92583 0.99893 1.02207 1.18768 0.94128 0.89141 0.81155 0.93399 1.21236 0.90780 1.38870 1.06360 0.92162 1.24886 0.98557 0.94853 0.95368 1.69894 1.35098 1.37636 1.09317 0.86471 0.84950 0.78420 0.77391 1.20562 1.21074 1.19881 1.46493 1.14681 1.55965 1.18397 1.20240 0.82739 0.79155 0.88840 1.90660 1.51482 1.60019 1.40525 1.21389 0.96533 0.97662 0.97555 0.89301 1.22148 0.99222 0.97759 0.99310 1.22572 0.83585 0.98966 0.96127 1.87880 1.16461 1.32384 1.90950 1.22279 0.89551 0.89227 0.93628 1.23503 0.99355 0.98593 0.98802 1.22783 0.98760 0.99095 0.96595 1.22947 0.93986 1.02324 0.96957 1.21799 0.95388 0.99983 0.97549 0.93169 0.95925 0.94337 0.88336 0.95127 0.92576 0.78143 0.90112 0.90414 0.88616 0.93049 0.89272 0.91165 0.90014 0.91503 0.90587 0.88732 0.90207 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -14.35 4.92 -54.93 -0.27 -14.62 16 14 C 0.51 9.75 5.73 -10.99 -0.06 9.68 16 15 O -0.55 -12.56 13.07 5.56 0.07 -12.49 16 16 C -0.11 -1.57 2.54 -91.53 -0.23 -1.81 16 17 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 18 C -0.15 -1.85 5.26 -26.62 -0.14 -1.99 16 19 C 0.06 0.69 6.73 37.19 0.25 0.94 16 20 O -0.36 -4.54 10.45 -35.23 -0.37 -4.91 16 21 C 0.09 1.09 1.03 -90.29 -0.09 1.00 16 22 C -0.16 -1.65 7.11 -26.08 -0.19 -1.83 16 23 C -0.13 -1.23 8.02 -25.85 -0.21 -1.44 16 24 C -0.12 -1.27 7.47 -26.08 -0.19 -1.47 16 25 C -0.11 -1.52 3.90 -26.66 -0.10 -1.62 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.83 8.01 -40.82 -0.33 6.50 16 33 H 0.08 0.94 7.63 -51.93 -0.40 0.55 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.49 7.21 -51.93 -0.37 0.12 16 37 H 0.09 0.85 8.02 -51.93 -0.42 0.44 16 38 H 0.07 0.68 7.26 -51.93 -0.38 0.30 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 44 H 0.08 1.10 8.04 -51.93 -0.42 0.69 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -29.73 338.99 -8.67 -38.40 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.47 Total: 7.58 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.35 Total: -10.52 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.36 Total: -38.65 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.30 Total: -17.40 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.73 -8.67 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897400097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.981 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds