Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47146 * 2 1 4 4 N 1.46901 * 109.46653 * 119.99294 * 2 1 3 5 5 C 1.48559 * 111.00554 * 288.05842 * 4 2 1 6 6 C 1.54379 * 104.59504 * 200.96130 * 5 4 2 7 7 C 1.54254 * 105.06038 * 23.85207 * 6 5 4 8 8 C 1.48562 * 110.99959 * 172.63721 * 4 2 1 9 9 H 1.09001 * 110.40657 * 40.26611 * 8 4 2 10 10 C 1.50699 * 110.41257 * 277.82527 * 8 4 2 11 11 O 1.20831 * 120.00292 * 359.97438 * 10 8 4 12 12 O 1.34227 * 120.00279 * 179.97438 * 10 8 4 13 13 C 1.45193 * 117.00424 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47319 * 179.97438 * 13 12 10 15 15 C 1.50698 * 115.54727 * 39.60457 * 14 13 12 16 16 H 1.08007 * 119.99498 * 266.28741 * 15 14 13 17 17 C 1.37870 * 120.00503 * 86.28929 * 15 14 13 18 18 N 1.31518 * 120.00037 * 4.75049 * 17 15 14 19 19 Si 1.86807 * 120.00010 * 184.75776 * 17 15 14 20 20 H 1.48497 * 109.47298 * 59.99814 * 19 17 15 21 21 H 1.48496 * 109.46986 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46952 * 299.99554 * 19 17 15 23 23 C 1.52999 * 117.50301 * 253.88730 * 14 13 12 24 24 C 1.52999 * 60.00255 * 252.51137 * 23 14 13 25 25 H 1.09001 * 109.46937 * 60.00567 * 1 2 3 26 26 H 1.08998 * 109.47700 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47683 * 300.00761 * 1 2 3 28 28 H 1.08990 * 109.47381 * 239.99562 * 2 1 3 29 29 H 1.09004 * 109.47453 * 53.48213 * 3 2 1 30 30 H 1.08997 * 109.47701 * 173.48373 * 3 2 1 31 31 H 1.09002 * 109.47079 * 293.48066 * 3 2 1 32 32 H 1.09006 * 110.40804 * 319.73962 * 5 4 2 33 33 H 1.09003 * 110.40885 * 82.17688 * 5 4 2 34 34 H 1.09003 * 110.32169 * 264.95281 * 6 5 4 35 35 H 1.09003 * 110.40851 * 142.79342 * 6 5 4 36 36 H 1.09001 * 110.32455 * 241.09924 * 7 6 5 37 37 H 1.09003 * 110.41490 * 118.94126 * 7 6 5 38 38 H 1.09001 * 109.47227 * 300.00378 * 13 12 10 39 39 H 1.09002 * 109.47227 * 60.00099 * 13 12 10 40 40 H 0.96996 * 119.99740 * 179.97438 * 18 17 15 41 41 H 1.09000 * 117.49403 * 0.02562 * 23 14 13 42 42 H 1.08996 * 117.49976 * 145.01942 * 23 14 13 43 43 H 1.08999 * 117.50004 * 252.50779 * 24 23 14 44 44 H 1.08999 * 117.49959 * 107.48629 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 1.7917 0.1270 2.4176 6 6 2.7913 -0.4301 3.4538 7 6 3.9110 -1.0847 2.6189 8 6 3.4939 -0.8681 1.1484 9 1 3.9695 0.0264 0.7462 10 6 3.8510 -2.0736 0.3177 11 8 2.9785 -2.7367 -0.1913 12 8 5.1384 -2.4109 0.1430 13 6 5.4083 -3.5842 -0.6686 14 6 6.9193 -3.8087 -0.7539 15 6 7.6865 -3.5586 0.5188 16 1 8.1316 -2.5913 0.6998 17 6 7.8202 -4.5644 1.4522 18 7 7.3597 -5.7685 1.1920 19 14 8.6553 -4.2169 3.0867 20 1 7.9090 -3.1550 3.8081 21 1 8.6715 -5.4545 3.9072 22 1 10.0489 -3.7650 2.8442 23 6 7.6110 -3.4666 -2.0751 24 6 7.4165 -4.9291 -1.6698 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8898 29 1 1.5846 1.9889 0.8259 30 1 3.1237 1.4448 0.1166 31 1 1.7750 1.9215 -0.9426 32 1 2.0010 1.1772 2.2139 33 1 0.7683 0.0043 2.7723 34 1 2.3061 -1.1739 4.0859 35 1 3.1964 0.3775 4.0635 36 1 3.9756 -2.1498 2.8411 37 1 4.8665 -0.5988 2.8168 38 1 4.9360 -4.4558 -0.2155 39 1 5.0067 -3.4331 -1.6706 40 1 7.4541 -6.4762 1.8485 41 1 6.9895 -3.0811 -2.8834 42 1 8.6210 -3.0602 -2.0240 43 1 8.2986 -5.4848 -1.3520 44 1 6.6670 -5.5061 -2.2115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923891631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -53.381418 kcal Electronic energy + Delta-G solvation = -23281.854313 eV Core-core repulsion = 20007.298222 eV Total energy + Delta-G solvation = -3274.556091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32176 -38.70820 -36.61322 -35.08717 -34.44263 -31.90452 -29.87816 -29.05071 -27.35626 -26.75390 -25.22736 -23.31535 -21.76306 -21.11929 -20.14471 -19.31117 -19.09197 -17.11106 -16.49972 -16.44822 -15.58669 -15.31296 -14.69701 -14.59228 -14.34546 -13.86541 -13.74135 -13.40834 -13.16742 -12.81938 -12.58597 -12.35684 -11.90917 -11.78272 -11.61830 -11.51364 -11.37634 -11.29335 -11.10734 -10.92278 -10.83418 -10.79531 -10.52814 -10.41381 -10.26401 -9.81198 -9.73613 -9.40751 -8.96843 -8.43771 -8.38881 -8.10321 -6.01550 -4.06443 2.87523 3.19986 3.31850 3.36916 3.39102 4.09019 4.42201 4.57703 4.65342 4.90323 4.93013 5.03991 5.18928 5.24471 5.24554 5.28777 5.41107 5.45092 5.48909 5.65077 5.66574 5.70356 5.83152 5.86279 5.94675 6.01656 6.02614 6.17015 6.22583 6.23127 6.28812 6.34222 6.51006 6.67883 6.76014 6.84510 7.00897 7.05715 7.21936 7.41620 7.57508 7.90048 8.39160 8.61627 8.93320 9.58183 11.07538 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.005272 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.578045 B = 5309.420234 C = 6233.085952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.064 3.936 3 C -0.191 4.191 4 N -0.483 5.483 5 C 0.026 3.974 6 C -0.124 4.124 7 C -0.111 4.111 8 C 0.068 3.932 9 H 0.088 0.912 10 C 0.460 3.540 11 O -0.507 6.507 12 O -0.326 6.326 13 C 0.119 3.881 14 C 0.033 3.967 15 C -0.480 4.480 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.883 5.883 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.211 4.211 24 C -0.140 4.140 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 12.717 1.030 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.045 4.045 3 C -0.249 4.249 4 N -0.208 5.208 5 C -0.102 4.102 6 C -0.162 4.162 7 C -0.149 4.149 8 C -0.041 4.041 9 H 0.105 0.895 10 C 0.301 3.699 11 O -0.396 6.396 12 O -0.241 6.241 13 C 0.045 3.955 14 C 0.032 3.968 15 C -0.517 4.517 16 H 0.079 0.921 17 C -0.133 4.133 18 N -0.520 5.520 19 Si 0.718 3.282 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.248 4.248 24 C -0.177 4.177 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.570 11.765 0.950 15.844 hybrid contribution 0.764 0.672 0.665 1.216 sum -9.805 12.437 1.616 15.920 Atomic orbital electron populations 1.21718 0.93835 1.02621 1.01140 1.21852 0.96453 0.92143 0.94057 1.22547 1.01614 0.98237 1.02525 1.65250 1.09919 1.43294 1.02306 1.23256 1.00384 0.96119 0.90420 1.22318 0.95901 1.00361 0.97591 1.22210 0.98861 1.03156 0.90686 1.22188 0.90355 0.95005 0.96595 0.89475 1.23129 0.82011 0.85679 0.79082 1.90592 1.50060 1.52217 1.46715 1.86572 1.25502 1.46496 1.65492 1.22705 0.98047 0.84112 0.90632 1.18795 0.88537 0.99068 0.90383 1.20224 1.32980 0.97882 1.00654 0.92082 1.24974 0.95264 0.94903 0.98198 1.69997 1.46018 1.01187 1.34812 0.86685 0.79966 0.77600 0.83929 1.20060 1.21370 1.20258 1.23120 1.01563 1.00153 0.99983 1.22498 1.02577 0.89932 1.02714 0.92456 0.91595 0.92906 0.89609 0.91834 0.92292 0.91842 0.92583 0.89827 0.90779 0.91015 0.90069 0.89697 0.91604 0.94305 0.92984 0.91723 0.90128 0.89084 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.27 37.16 0.34 -1.10 16 2 C 0.06 0.80 2.77 -67.71 -0.19 0.61 16 3 C -0.19 -1.91 8.19 37.15 0.30 -1.61 16 4 N -0.48 -6.83 4.61 -215.60 -0.99 -7.82 16 5 C 0.03 0.28 5.54 -2.18 -0.01 0.27 16 6 C -0.12 -1.39 7.00 -25.35 -0.18 -1.56 16 7 C -0.11 -1.61 6.54 -25.36 -0.17 -1.78 16 8 C 0.07 1.07 2.66 -67.22 -0.18 0.89 16 9 H 0.09 1.23 6.00 -51.93 -0.31 0.92 16 10 C 0.46 9.32 6.92 36.01 0.25 9.57 16 11 O -0.51 -11.39 15.63 -18.75 -0.29 -11.68 16 12 O -0.33 -7.43 9.60 -39.25 -0.38 -7.81 16 13 C 0.12 2.84 5.53 37.16 0.21 3.04 16 14 C 0.03 0.82 1.89 -155.66 -0.29 0.52 16 15 C -0.48 -13.01 8.24 -34.44 -0.28 -13.29 16 16 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 17 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 18 N -0.88 -25.01 12.57 55.43 0.70 -24.31 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.21 -4.63 9.88 -26.73 -0.26 -4.89 16 24 C -0.14 -3.29 9.10 -26.73 -0.24 -3.54 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.50 7.34 -51.93 -0.38 0.12 16 28 H 0.09 1.27 7.41 -51.93 -0.38 0.88 16 29 H 0.06 0.56 6.32 -51.93 -0.33 0.23 16 30 H 0.06 0.62 6.14 -51.93 -0.32 0.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.53 5.35 -51.93 -0.28 0.26 16 33 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.36 7.85 -51.93 -0.41 0.96 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.71 8.13 -51.93 -0.42 1.28 16 39 H 0.04 0.87 7.94 -51.93 -0.41 0.45 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 42 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.09 2.28 8.11 -51.93 -0.42 1.86 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -30.07 349.96 -8.93 -39.00 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.42 Total: 2.41 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.80 Total: -11.07 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: -0.30 Total: -32.13 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.67 Total: -19.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.07 -8.93 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923891631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.381 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds