Wall clock time and date at job start Tue Mar 31 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47565 * 2 1 4 4 C 1.52998 * 109.47217 * 120.00534 * 2 1 3 5 5 H 1.09001 * 109.48542 * 300.02673 * 4 2 1 6 6 C 1.53092 * 109.48153 * 179.97438 * 4 2 1 7 7 C 1.53171 * 109.16479 * 182.40727 * 6 4 2 8 8 H 1.08995 * 109.55004 * 176.93671 * 7 6 4 9 9 C 1.50702 * 109.54377 * 297.11344 * 7 6 4 10 10 O 1.21291 * 119.99880 * 9.99447 * 9 7 6 11 11 N 1.34774 * 120.00038 * 189.99429 * 9 7 6 12 12 C 1.37102 * 120.00084 * 175.20614 * 11 9 7 13 13 H 1.07998 * 119.99601 * 54.52865 * 12 11 9 14 14 C 1.38948 * 119.99890 * 234.53264 * 12 11 9 15 15 N 1.31411 * 119.99820 * 189.00863 * 14 12 11 16 16 Si 1.86796 * 120.00101 * 9.00920 * 14 12 11 17 17 H 1.48505 * 109.47274 * 264.77343 * 16 14 12 18 18 H 1.48501 * 109.47302 * 24.77382 * 16 14 12 19 19 H 1.48502 * 109.47268 * 144.77463 * 16 14 12 20 20 C 1.46500 * 120.00340 * 355.20481 * 11 9 7 21 21 C 1.52998 * 117.50080 * 247.64014 * 20 11 9 22 22 C 1.53002 * 117.50476 * 178.97597 * 20 11 9 23 23 C 1.53188 * 109.03747 * 56.97938 * 7 6 4 24 24 C 1.53086 * 109.16029 * 303.02152 * 23 7 6 25 25 O 1.42904 * 109.47999 * 60.05474 * 4 2 1 26 26 H 1.09002 * 109.46876 * 300.00042 * 1 2 3 27 27 H 1.09001 * 109.47523 * 59.99550 * 1 2 3 28 28 H 1.08996 * 109.47761 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46600 * 240.00317 * 2 1 3 30 30 H 1.09001 * 109.47067 * 300.00729 * 3 2 1 31 31 H 1.09002 * 109.47057 * 60.00069 * 3 2 1 32 32 H 1.08995 * 109.47191 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.52347 * 62.49671 * 6 4 2 34 34 H 1.09003 * 109.57183 * 302.34328 * 6 4 2 35 35 H 0.96997 * 120.00021 * 179.97438 * 15 14 12 36 36 H 1.09004 * 115.54626 * 33.30411 * 20 11 9 37 37 H 1.09002 * 117.49972 * 359.97438 * 21 20 11 38 38 H 1.09001 * 117.50417 * 145.01691 * 21 20 11 39 39 H 1.08994 * 117.49910 * 214.97948 * 22 20 11 40 40 H 1.09003 * 117.49253 * 0.02562 * 22 20 11 41 41 H 1.08998 * 109.51703 * 62.92559 * 23 7 6 42 42 H 1.09003 * 109.52262 * 183.11402 * 23 7 6 43 43 H 1.09002 * 109.48400 * 297.62500 * 24 23 7 44 44 H 1.09000 * 109.49155 * 177.59837 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6764 -0.2081 2.1393 6 6 3.5709 -0.7220 1.2490 7 6 4.0735 -1.4976 2.4705 8 1 5.1620 -1.5486 2.4477 9 6 3.6280 -0.7992 3.7295 10 8 2.8267 0.1093 3.6679 11 7 4.1200 -1.1840 4.9237 12 6 3.7914 -0.4865 6.0574 13 1 2.7539 -0.3258 6.3108 14 6 4.7931 0.0136 6.8803 15 7 4.4871 0.5248 8.0515 16 14 6.5748 -0.0409 6.3216 17 1 7.2284 -1.2567 6.8693 18 1 6.6275 -0.0763 4.8379 19 1 7.2849 1.1670 6.8134 20 6 5.0059 -2.3475 5.0106 21 6 4.4750 -3.5873 5.7330 22 6 5.5506 -2.7194 6.3912 23 6 3.4915 -2.9142 2.4371 24 6 1.9637 -2.8288 2.3914 25 8 1.5648 -2.0691 1.2486 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4424 0.0005 33 1 3.9356 0.3041 1.2937 34 1 3.9358 -1.1990 0.3393 35 1 5.1865 0.8736 8.6261 36 1 5.6590 -2.5062 4.1524 37 1 3.4667 -3.5371 6.1441 38 1 4.7792 -4.5616 5.3505 39 1 6.5618 -3.1230 6.4412 40 1 5.2494 -2.0985 7.2349 41 1 3.8539 -3.4360 1.5514 42 1 3.7995 -3.4557 3.3316 43 1 1.5995 -2.3428 3.2965 44 1 1.5452 -3.8330 2.3244 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:44 Heat of formation + Delta-G solvation = -52.418309 kcal Electronic energy + Delta-G solvation = -24315.950425 eV Core-core repulsion = 21041.436098 eV Total energy + Delta-G solvation = -3274.514327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24567 -38.28827 -36.45693 -35.10999 -33.34095 -32.82104 -31.60366 -29.74189 -27.05859 -25.97421 -24.32362 -23.24789 -22.14394 -21.91749 -20.78041 -19.91374 -18.29241 -17.15680 -16.41612 -15.98083 -15.74636 -15.21986 -14.64545 -14.46225 -14.07474 -13.83112 -13.51315 -13.36917 -13.28368 -12.96725 -12.60024 -12.16538 -12.16024 -12.02089 -11.91540 -11.37233 -11.21741 -11.11325 -10.98797 -10.93096 -10.87595 -10.76544 -10.57077 -10.18732 -10.07569 -9.88818 -9.80979 -9.52271 -9.13260 -8.84989 -8.27941 -7.46694 -6.35158 -4.17902 3.10812 3.24123 3.28500 3.59834 4.10380 4.16502 4.29059 4.44135 4.90364 4.93047 5.10914 5.17693 5.21346 5.28552 5.37937 5.40367 5.48151 5.54885 5.67086 5.69138 5.72099 5.82666 5.88354 5.94759 6.00581 6.04951 6.10570 6.13646 6.19494 6.22815 6.25499 6.27249 6.38101 6.41394 6.46377 6.56419 6.64701 6.75438 6.90593 7.61916 7.67100 8.33780 8.50549 8.94239 9.26330 9.74713 10.73678 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.006243 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.827637 B = 4483.613861 C = 4994.396631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.146 4.146 4 C 0.080 3.920 5 H 0.101 0.899 6 C -0.124 4.124 7 C -0.114 4.114 8 H 0.084 0.916 9 C 0.491 3.509 10 O -0.548 6.548 11 N -0.446 5.446 12 C -0.319 4.319 13 H 0.096 0.904 14 C 0.069 3.931 15 N -0.874 5.874 16 Si 0.884 3.116 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.294 1.294 20 C 0.054 3.946 21 C -0.189 4.189 22 C -0.191 4.191 23 C -0.148 4.148 24 C 0.064 3.936 25 O -0.385 6.385 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -6.730 -12.173 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.203 4.203 4 C 0.023 3.977 5 H 0.118 0.882 6 C -0.162 4.162 7 C -0.136 4.136 8 H 0.103 0.897 9 C 0.280 3.720 10 O -0.428 6.428 11 N -0.167 5.167 12 C -0.447 4.447 13 H 0.113 0.887 14 C -0.137 4.137 15 N -0.510 5.510 16 Si 0.711 3.289 17 H -0.187 1.187 18 H -0.193 1.193 19 H -0.221 1.221 20 C -0.052 4.052 21 C -0.228 4.228 22 C -0.228 4.228 23 C -0.186 4.186 24 C -0.012 4.012 25 O -0.305 6.305 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.071 -6.219 -12.149 13.649 hybrid contribution 1.446 0.003 0.194 1.459 sum 1.375 -6.216 -11.955 13.545 Atomic orbital electron populations 1.21744 0.95037 1.02018 1.01074 1.21051 0.96230 0.95686 0.97340 1.21839 1.01237 0.95387 1.01846 1.22592 0.92465 0.82854 0.99801 0.88162 1.21982 0.97241 1.00856 0.96156 1.21419 1.01069 0.96086 0.95007 0.89748 1.20317 0.83787 0.83902 0.84041 1.90473 1.34769 1.31677 1.85900 1.43140 1.43735 1.23512 1.06348 1.18824 0.94944 1.31996 0.98913 0.88654 1.25591 0.99170 0.93914 0.95001 1.69694 1.34285 1.38464 1.08542 0.86877 0.84579 0.77506 0.79954 1.18708 1.19276 1.22099 1.21939 0.97999 0.89441 0.95784 1.23306 0.99956 0.94162 1.05349 1.23619 0.97482 1.03700 0.98004 1.22238 0.97246 0.95841 1.03284 1.22454 0.93591 0.95776 0.89421 1.87774 1.75003 1.24118 1.43591 0.92733 0.93376 0.92137 0.91462 0.92837 0.91991 0.92423 0.90533 0.91766 0.91661 0.87409 0.88409 0.89516 0.89349 0.85775 0.91076 0.89649 0.92860 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.05 37.16 0.34 -1.54 16 2 C -0.08 -1.19 2.72 -90.62 -0.25 -1.44 16 3 C -0.15 -1.92 8.84 37.16 0.33 -1.60 16 4 C 0.08 1.35 1.94 -26.68 -0.05 1.30 16 5 H 0.10 2.05 5.46 -51.93 -0.28 1.77 16 6 C -0.12 -2.02 4.17 -26.60 -0.11 -2.13 16 7 C -0.11 -1.98 2.23 -91.59 -0.20 -2.19 16 8 H 0.08 1.37 7.19 -51.93 -0.37 0.99 16 9 C 0.49 11.02 5.71 -10.99 -0.06 10.96 16 10 O -0.55 -14.02 13.54 5.55 0.08 -13.94 16 11 N -0.45 -10.39 2.23 -107.73 -0.24 -10.63 16 12 C -0.32 -8.78 8.60 -14.93 -0.13 -8.91 16 13 H 0.10 2.98 8.06 -52.49 -0.42 2.55 16 14 C 0.07 1.88 4.01 -17.47 -0.07 1.81 16 15 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16 16 Si 0.88 20.65 24.08 -169.99 -4.09 16.56 16 17 H -0.26 -5.53 5.63 56.52 0.32 -5.21 16 18 H -0.27 -6.27 7.09 56.52 0.40 -5.86 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.05 1.03 2.83 -67.93 -0.19 0.83 16 21 C -0.19 -3.17 9.37 -26.69 -0.25 -3.42 16 22 C -0.19 -3.64 6.37 -26.69 -0.17 -3.81 16 23 C -0.15 -2.21 5.43 -26.59 -0.14 -2.35 16 24 C 0.06 1.03 6.62 37.20 0.25 1.27 16 25 O -0.39 -6.49 9.73 -35.23 -0.34 -6.83 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.75 6.49 -51.93 -0.34 0.41 16 33 H 0.08 1.29 6.57 -51.93 -0.34 0.95 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.11 1.81 6.65 -51.93 -0.35 1.46 16 37 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.48 7.64 -51.93 -0.40 1.09 16 40 H 0.12 2.80 5.05 -51.93 -0.26 2.54 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.24 5.22 -51.93 -0.27 0.97 16 43 H 0.05 0.99 7.38 -51.93 -0.38 0.61 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 324.35 15.07 4.89 4.89 Total: -1.00 -30.14 324.35 -6.92 -37.06 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.26 Total: 8.38 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.72 Total: -11.22 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.53 Total: -34.90 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.27 Total: -20.77 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.09 Total: 16.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.14 -6.92 -37.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.361 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds