Wall clock time and date at job start Tue Mar 31 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53012 * 109.46888 * 2 1 4 4 C 1.53002 * 109.47112 * 119.99331 * 2 1 3 5 5 H 1.09006 * 109.47401 * 60.02758 * 4 2 1 6 6 C 1.53084 * 109.48987 * 180.02562 * 4 2 1 7 7 C 1.53181 * 109.16418 * 177.60234 * 6 4 2 8 8 H 1.09000 * 109.54428 * 183.15697 * 7 6 4 9 9 C 1.50695 * 109.54502 * 62.97587 * 7 6 4 10 10 O 1.21294 * 119.99826 * 359.97438 * 9 7 6 11 11 N 1.34770 * 120.00147 * 180.02562 * 9 7 6 12 12 C 1.37104 * 120.00103 * 180.02562 * 11 9 7 13 13 H 1.08000 * 119.99873 * 224.19979 * 12 11 9 14 14 C 1.38941 * 119.99900 * 44.19302 * 12 11 9 15 15 N 1.31421 * 120.00072 * 208.15029 * 14 12 11 16 16 Si 1.86797 * 120.00216 * 28.15727 * 14 12 11 17 17 H 1.48494 * 109.47658 * 95.31564 * 16 14 12 18 18 H 1.48500 * 109.47204 * 215.32045 * 16 14 12 19 19 H 1.48506 * 109.46921 * 335.31420 * 16 14 12 20 20 C 1.46500 * 120.00222 * 359.97438 * 11 9 7 21 21 C 1.52997 * 117.50135 * 191.53277 * 20 11 9 22 22 C 1.53004 * 117.50071 * 122.86802 * 20 11 9 23 23 C 1.53184 * 109.04171 * 303.02482 * 7 6 4 24 24 C 1.53086 * 109.16061 * 56.96334 * 23 7 6 25 25 O 1.42896 * 109.42828 * 302.40479 * 24 23 7 26 26 H 1.09004 * 109.47394 * 300.00543 * 1 2 3 27 27 H 1.08997 * 109.46638 * 60.00020 * 1 2 3 28 28 H 1.08994 * 109.46995 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47598 * 240.00057 * 2 1 3 30 30 H 1.09000 * 109.46887 * 59.99852 * 3 2 1 31 31 H 1.08999 * 109.46526 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46773 * 299.99366 * 3 2 1 33 33 H 1.09003 * 109.52408 * 297.50801 * 6 4 2 34 34 H 1.09008 * 109.52392 * 57.63441 * 6 4 2 35 35 H 0.97002 * 119.99826 * 180.02562 * 15 14 12 36 36 H 1.09004 * 115.54926 * 337.20068 * 20 11 9 37 37 H 1.08999 * 117.50082 * 359.97438 * 21 20 11 38 38 H 1.09001 * 117.50393 * 145.02146 * 21 20 11 39 39 H 1.09002 * 117.49565 * 214.97710 * 22 20 11 40 40 H 1.09000 * 117.49479 * 359.97438 * 22 20 11 41 41 H 1.09000 * 109.51206 * 297.05924 * 23 7 6 42 42 H 1.09007 * 109.52877 * 176.87344 * 23 7 6 43 43 H 1.09007 * 109.47809 * 182.41547 * 24 23 7 44 44 H 1.09005 * 109.48331 * 62.39547 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6771 -1.7490 1.2493 6 6 3.5709 -0.7208 1.2501 7 6 4.0732 -1.3912 2.5326 8 1 5.1617 -1.3444 2.5662 9 6 3.6295 -2.8311 2.5559 10 8 2.9752 -3.2790 1.6380 11 7 3.9588 -3.6210 3.5970 12 6 3.5556 -4.9312 3.6180 13 1 3.1507 -5.3571 4.5241 14 6 3.6677 -5.7109 2.4735 15 7 2.8398 -6.7125 2.2770 16 14 4.9953 -5.3359 1.2141 17 1 6.1813 -6.1903 1.4755 18 1 4.4766 -5.6128 -0.1495 19 1 5.3835 -3.9060 1.3150 20 6 4.7486 -3.0799 4.7059 21 6 5.3191 -4.0749 5.7185 22 6 4.1486 -3.1697 6.1105 23 6 3.4911 -0.6542 3.7427 24 6 1.9633 -0.6569 3.6455 25 8 1.5643 -0.0472 2.4163 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8901 33 1 3.9357 -1.2726 0.3837 34 1 3.9350 0.3058 1.2079 35 1 2.9183 -7.2570 1.4781 36 1 5.3493 -2.2013 4.4705 37 1 5.1065 -5.1321 5.5598 38 1 6.2949 -3.8508 6.1495 39 1 4.3549 -2.3504 6.7992 40 1 3.1660 -3.6310 6.2094 41 1 3.8538 0.3737 3.7521 42 1 3.7987 -1.1583 4.6590 43 1 1.5449 -0.0967 4.4818 44 1 1.5988 -1.6837 3.6771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:46 Heat of formation + Delta-G solvation = -49.366433 kcal Electronic energy + Delta-G solvation = -24509.331152 eV Core-core repulsion = 21234.949164 eV Total energy + Delta-G solvation = -3274.381988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23834 -38.21407 -36.35003 -34.94302 -33.37774 -32.76781 -31.34727 -29.64800 -26.98767 -25.96357 -24.39760 -23.17274 -22.07771 -21.78493 -20.56047 -19.62247 -18.99522 -16.57750 -16.13692 -15.90991 -15.58373 -15.23890 -14.62975 -14.43635 -14.02396 -13.92550 -13.54728 -13.40719 -13.03048 -12.94974 -12.62465 -12.23150 -11.96904 -11.93653 -11.66022 -11.40104 -11.25630 -11.05858 -11.01180 -10.89028 -10.61447 -10.43347 -10.41167 -10.29413 -10.15019 -9.90362 -9.82787 -9.65123 -9.02344 -8.64179 -8.20116 -7.42960 -6.30205 -3.96394 3.21892 3.43611 3.44405 3.77206 4.20589 4.32906 4.44110 4.58251 4.94809 5.06086 5.15458 5.19853 5.26895 5.31902 5.37469 5.40703 5.52705 5.57376 5.64939 5.73990 5.78157 5.86480 5.96275 5.99388 6.03620 6.09580 6.11875 6.18347 6.20593 6.25660 6.30487 6.30698 6.42217 6.44723 6.50149 6.62393 6.67008 6.74674 6.85328 7.71989 7.80534 8.01046 8.78257 8.95841 9.41496 9.87173 10.77650 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.007608 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.870143 B = 3679.668814 C = 4511.307807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.143 4.143 4 C 0.086 3.914 5 H 0.092 0.908 6 C -0.124 4.124 7 C -0.111 4.111 8 H 0.082 0.918 9 C 0.479 3.521 10 O -0.548 6.548 11 N -0.435 5.435 12 C -0.358 4.358 13 H 0.091 0.909 14 C 0.105 3.895 15 N -0.848 5.848 16 Si 0.904 3.096 17 H -0.296 1.296 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.061 3.939 21 C -0.177 4.177 22 C -0.198 4.198 23 C -0.151 4.151 24 C 0.064 3.936 25 O -0.382 6.382 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 13.469 1.731 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.029 3.971 5 H 0.110 0.890 6 C -0.162 4.162 7 C -0.133 4.133 8 H 0.100 0.900 9 C 0.268 3.732 10 O -0.429 6.429 11 N -0.155 5.155 12 C -0.483 4.483 13 H 0.109 0.891 14 C -0.105 4.105 15 N -0.481 5.481 16 Si 0.733 3.267 17 H -0.224 1.224 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.044 4.044 21 C -0.215 4.215 22 C -0.237 4.237 23 C -0.189 4.189 24 C -0.013 4.013 25 O -0.302 6.302 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.752 13.216 1.135 13.380 hybrid contribution 1.091 -0.218 -0.523 1.229 sum 2.843 12.998 0.612 13.320 Atomic orbital electron populations 1.21739 0.94987 1.01815 1.01336 1.21130 0.96329 0.96374 0.96675 1.21818 1.00680 0.96099 1.01395 1.22382 0.92446 0.97600 0.84655 0.89023 1.21964 0.97169 0.99803 0.97274 1.21369 1.00780 0.94568 0.96578 0.89985 1.20024 0.82043 0.86398 0.84715 1.90460 1.41438 1.75023 1.35999 1.43156 1.45614 1.09780 1.16964 1.18522 1.44190 0.85074 1.00478 0.89128 1.25199 0.94860 0.93747 0.96744 1.69862 1.31649 1.19356 1.27210 0.86330 0.80934 0.78306 0.81148 1.22440 1.21307 1.19823 1.21886 0.98416 0.98874 0.85239 1.23203 0.96501 0.99227 1.02576 1.23288 0.99041 1.02682 0.98669 1.22367 0.97425 1.00503 0.98628 1.22452 0.93548 0.98675 0.86596 1.87771 1.74931 1.53912 1.13537 0.92031 0.93404 0.92748 0.90531 0.92013 0.92855 0.93520 0.90948 0.91359 0.91813 0.87298 0.87057 0.89604 0.89558 0.88601 0.91315 0.89335 0.89568 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.05 37.16 0.34 -1.65 16 2 C -0.09 -1.29 2.81 -90.61 -0.25 -1.54 16 3 C -0.14 -1.81 8.70 37.16 0.32 -1.49 16 4 C 0.09 1.52 2.09 -26.69 -0.06 1.47 16 5 H 0.09 1.99 5.81 -51.93 -0.30 1.69 16 6 C -0.12 -2.13 4.27 -26.59 -0.11 -2.24 16 7 C -0.11 -2.00 2.23 -91.59 -0.20 -2.21 16 8 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 9 C 0.48 11.03 3.49 -10.99 -0.04 10.99 16 10 O -0.55 -14.63 10.73 5.54 0.06 -14.57 16 11 N -0.44 -10.07 2.44 -107.73 -0.26 -10.33 16 12 C -0.36 -9.70 8.02 -14.93 -0.12 -9.82 16 13 H 0.09 2.59 7.78 -52.49 -0.41 2.18 16 14 C 0.11 3.02 4.56 -17.47 -0.08 2.94 16 15 N -0.85 -25.43 13.96 55.50 0.77 -24.66 16 16 Si 0.90 23.60 26.15 -169.99 -4.44 19.15 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 19 H -0.27 -6.99 5.89 56.52 0.33 -6.66 16 20 C 0.06 1.11 4.34 -67.93 -0.29 0.82 16 21 C -0.18 -2.97 9.84 -26.69 -0.26 -3.23 16 22 C -0.20 -3.14 9.54 -26.69 -0.25 -3.39 16 23 C -0.15 -2.30 5.25 -26.59 -0.14 -2.44 16 24 C 0.06 1.05 6.61 37.20 0.25 1.30 16 25 O -0.38 -6.55 9.06 -35.23 -0.32 -6.87 16 26 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.05 0.65 6.38 -51.93 -0.33 0.32 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 34 H 0.07 1.01 6.31 -51.92 -0.33 0.68 16 35 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.11 1.71 6.03 -51.93 -0.31 1.40 16 37 H 0.11 2.15 6.99 -51.93 -0.36 1.79 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.29 4.54 -51.92 -0.24 1.05 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -31.16 327.02 -7.46 -38.62 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.28 Total: 4.22 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -0.91 Total: -10.49 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.51 Total: -34.99 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.26 Total: -21.44 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.44 Total: 19.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.16 -7.46 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.747 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds