Wall clock time and date at job start Tue Mar 31 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 C 1.52999 * 109.46814 * 119.99886 * 2 1 3 5 5 H 1.09001 * 109.49611 * 59.97303 * 4 2 1 6 6 C 1.53094 * 109.47791 * 180.02562 * 4 2 1 7 7 C 1.53185 * 109.16319 * 177.59376 * 6 4 2 8 8 H 1.08998 * 109.54235 * 62.88165 * 7 6 4 9 9 C 1.50699 * 109.54242 * 183.06376 * 7 6 4 10 10 O 1.21292 * 120.00091 * 16.06170 * 9 7 6 11 11 N 1.34773 * 119.99569 * 196.06450 * 9 7 6 12 12 C 1.37106 * 119.99797 * 184.16310 * 11 9 7 13 13 H 1.08000 * 119.99764 * 332.73103 * 12 11 9 14 14 C 1.38948 * 120.00065 * 152.73538 * 12 11 9 15 15 N 1.31413 * 119.99951 * 346.74760 * 14 12 11 16 16 Si 1.86802 * 119.99942 * 166.74818 * 14 12 11 17 17 H 1.48495 * 109.46990 * 89.99988 * 16 14 12 18 18 H 1.48497 * 109.46935 * 209.99525 * 16 14 12 19 19 H 1.48494 * 109.47104 * 329.99651 * 16 14 12 20 20 C 1.46500 * 120.00318 * 4.16332 * 11 9 7 21 21 C 1.53002 * 117.50019 * 132.19790 * 20 11 9 22 22 C 1.52996 * 117.49982 * 63.53172 * 20 11 9 23 23 C 1.53179 * 109.03117 * 303.01233 * 7 6 4 24 24 C 1.53097 * 109.16517 * 56.98425 * 23 7 6 25 25 O 1.42899 * 109.41508 * 302.39124 * 24 23 7 26 26 H 1.09008 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47352 * 300.00411 * 1 2 3 28 28 H 1.08996 * 109.46989 * 60.00140 * 1 2 3 29 29 H 1.08994 * 109.47082 * 239.99641 * 2 1 3 30 30 H 1.09007 * 109.46916 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47201 * 299.99730 * 3 2 1 32 32 H 1.08994 * 109.47563 * 59.99935 * 3 2 1 33 33 H 1.08991 * 109.52742 * 57.68242 * 6 4 2 34 34 H 1.09001 * 109.57176 * 297.52180 * 6 4 2 35 35 H 0.96998 * 120.00071 * 185.05764 * 15 14 12 36 36 H 1.09004 * 115.54491 * 277.86280 * 20 11 9 37 37 H 1.08996 * 117.49901 * 359.97438 * 21 20 11 38 38 H 1.09001 * 117.49777 * 145.02294 * 21 20 11 39 39 H 1.08994 * 117.50107 * 214.97758 * 22 20 11 40 40 H 1.08993 * 117.49730 * 359.97438 * 22 20 11 41 41 H 1.09004 * 109.52155 * 176.88819 * 23 7 6 42 42 H 1.08991 * 109.52627 * 297.07677 * 23 7 6 43 43 H 1.08998 * 109.48095 * 182.40388 * 24 23 7 44 44 H 1.09006 * 109.48741 * 62.37337 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6764 -1.7488 1.2499 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.3911 2.5323 8 1 3.7511 -2.4322 2.5500 9 6 5.5784 -1.3283 2.5774 10 8 6.1757 -0.5647 1.8486 11 7 6.2606 -2.1208 3.4277 12 6 7.6228 -2.0038 3.5304 13 1 8.1987 -1.6436 2.6907 14 6 8.2625 -2.3486 4.7147 15 7 7.5610 -2.5348 5.8102 16 14 10.1195 -2.5474 4.7496 17 1 10.7507 -1.2441 5.0785 18 1 10.4906 -3.5509 5.7794 19 1 10.5935 -3.0052 3.4189 20 6 5.5468 -3.1073 4.2422 21 6 6.1055 -4.5312 4.2780 22 6 4.8161 -4.2335 3.5084 23 6 3.4915 -0.6537 3.7423 24 6 1.9636 -0.6566 3.6456 25 8 1.5643 -0.0472 2.4163 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.9349 0.3057 1.2085 34 1 3.9365 -1.2721 0.3835 35 1 8.0121 -2.7031 6.6522 36 1 5.0911 -2.7223 5.1545 37 1 7.0039 -4.7341 3.6953 38 1 6.0169 -5.0832 5.2137 39 1 3.8800 -4.5899 3.9381 40 1 4.8662 -4.2403 2.4196 41 1 3.7994 -1.1576 4.6585 42 1 3.8539 0.3741 3.7514 43 1 1.5454 -0.0964 4.4818 44 1 1.5992 -1.6835 3.6774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:49 Heat of formation + Delta-G solvation = -66.710458 kcal Electronic energy + Delta-G solvation = -23782.724407 eV Core-core repulsion = 20507.590325 eV Total energy + Delta-G solvation = -3275.134081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87145 -38.35652 -36.11315 -35.08104 -33.35520 -32.68253 -31.03515 -29.77126 -27.08724 -26.12316 -24.41952 -23.22405 -21.98701 -21.39352 -20.66736 -19.52978 -18.48634 -16.89188 -16.32930 -15.73600 -15.46531 -15.12316 -14.69255 -14.43277 -14.19335 -13.89148 -13.83991 -13.44691 -13.14433 -12.93477 -12.36307 -12.14775 -12.07371 -11.79862 -11.50860 -11.37757 -11.18055 -11.07649 -10.85786 -10.76552 -10.68794 -10.48917 -10.43123 -10.36748 -10.13060 -10.02517 -9.68143 -9.38798 -9.27438 -8.85090 -8.22172 -7.62654 -6.29504 -3.86673 3.16942 3.25295 3.30240 3.87719 3.99929 4.12509 4.64946 4.67913 4.93537 4.99017 5.07474 5.14654 5.25795 5.36196 5.40206 5.48775 5.58947 5.68765 5.74190 5.77282 5.80794 5.83872 5.91290 5.98888 6.02449 6.03525 6.12508 6.14912 6.20270 6.24828 6.35199 6.37094 6.42216 6.54667 6.63843 6.69918 6.82898 6.89065 7.14251 7.48936 7.60648 8.18612 8.52304 9.21557 9.44986 10.02353 10.77335 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028479 B = 0.004854 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.931996 B = 5767.437213 C = 6145.737875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.147 4.147 4 C 0.096 3.904 5 H 0.053 0.947 6 C -0.128 4.128 7 C -0.102 4.102 8 H 0.085 0.915 9 C 0.465 3.535 10 O -0.585 6.585 11 N -0.422 5.422 12 C -0.314 4.314 13 H 0.094 0.906 14 C 0.043 3.957 15 N -0.872 5.872 16 Si 0.917 3.083 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.134 3.866 21 C -0.144 4.144 22 C -0.225 4.225 23 C -0.140 4.140 24 C 0.066 3.934 25 O -0.378 6.378 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -0.690 -4.200 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.039 3.961 5 H 0.070 0.930 6 C -0.166 4.166 7 C -0.124 4.124 8 H 0.103 0.897 9 C 0.254 3.746 10 O -0.469 6.469 11 N -0.140 5.140 12 C -0.442 4.442 13 H 0.112 0.888 14 C -0.162 4.162 15 N -0.510 5.510 16 Si 0.744 3.256 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.195 1.195 20 C 0.028 3.972 21 C -0.181 4.181 22 C -0.264 4.264 23 C -0.178 4.178 24 C -0.010 4.010 25 O -0.297 6.297 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.256 -0.273 -4.367 13.013 hybrid contribution 1.249 -0.560 0.420 1.432 sum -11.006 -0.833 -3.947 11.722 Atomic orbital electron populations 1.21769 0.95027 1.01361 1.01826 1.21127 0.96027 0.97255 0.96072 1.21829 1.01624 0.95403 1.01526 1.22137 0.93408 0.94913 0.85676 0.92954 1.22058 0.94168 1.03132 0.97287 1.21276 0.94864 1.00579 0.95674 0.89707 1.19945 0.88118 0.82303 0.84283 1.90505 1.70519 1.41490 1.44369 1.43052 1.06382 1.29179 1.35385 1.19499 0.80868 1.44420 0.99382 0.88786 1.25237 0.99648 0.96666 0.94631 1.69853 1.35659 1.46862 0.98609 0.86071 0.83245 0.78194 0.78097 1.20388 1.20864 1.19532 1.21062 0.97334 0.84523 0.94277 1.22737 0.95643 0.99408 1.00322 1.23540 0.96699 1.07039 0.99087 1.22071 0.95406 1.01864 0.98466 1.22544 0.94211 0.97647 0.86638 1.87851 1.74511 1.53926 1.13390 0.93181 0.91852 0.93125 0.90390 0.92026 0.93365 0.91885 0.89794 0.91371 0.92341 0.87720 0.89169 0.89705 0.89493 0.89764 0.90263 0.91014 0.89130 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.05 37.16 0.34 -1.17 16 2 C -0.09 -1.05 2.81 -90.62 -0.25 -1.30 16 3 C -0.15 -1.84 8.70 37.16 0.32 -1.51 16 4 C 0.10 1.35 2.38 -26.68 -0.06 1.28 16 5 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 6 C -0.13 -2.18 3.89 -26.59 -0.10 -2.28 16 7 C -0.10 -1.90 1.88 -91.58 -0.17 -2.08 16 8 H 0.08 1.47 5.51 -51.93 -0.29 1.18 16 9 C 0.47 11.28 6.75 -10.99 -0.07 11.21 16 10 O -0.58 -16.27 15.68 5.55 0.09 -16.19 16 11 N -0.42 -10.55 2.91 -107.73 -0.31 -10.87 16 12 C -0.31 -8.66 8.82 -14.93 -0.13 -8.80 16 13 H 0.09 2.76 7.47 -52.49 -0.39 2.36 16 14 C 0.04 1.11 4.72 -17.47 -0.08 1.03 16 15 N -0.87 -22.61 10.98 55.50 0.61 -22.00 16 16 Si 0.92 20.66 29.58 -169.99 -5.03 15.63 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 C 0.13 2.87 2.87 -67.93 -0.20 2.68 16 21 C -0.14 -2.89 8.74 -26.69 -0.23 -3.12 16 22 C -0.23 -3.97 8.37 -26.69 -0.22 -4.20 16 23 C -0.14 -2.37 5.32 -26.59 -0.14 -2.51 16 24 C 0.07 0.91 6.84 37.21 0.25 1.17 16 25 O -0.38 -5.54 9.06 -35.23 -0.32 -5.86 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.85 6.38 -51.93 -0.33 0.52 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.83 7.68 -51.93 -0.40 0.44 16 33 H 0.08 1.58 6.00 -51.93 -0.31 1.27 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 36 H 0.11 2.32 7.14 -51.93 -0.37 1.95 16 37 H 0.09 1.97 7.98 -51.93 -0.41 1.55 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.08 1.51 7.88 -51.93 -0.41 1.10 16 41 H 0.08 1.37 6.61 -51.93 -0.34 1.03 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -29.71 338.88 -8.06 -37.77 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.44 Total: 6.02 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.76 Total: -9.61 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.30 Total: -32.87 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.23 Total: -22.05 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.71 -8.06 -37.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.938 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds