Wall clock time and date at job start Tue Mar 31 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47080 * 2 1 4 4 C 1.53002 * 109.46990 * 120.00023 * 2 1 3 5 5 H 1.09003 * 109.47888 * 299.97676 * 4 2 1 6 6 C 1.53094 * 109.47866 * 179.97438 * 4 2 1 7 7 C 1.53182 * 109.16098 * 182.40634 * 6 4 2 8 8 H 1.09004 * 109.61699 * 297.06664 * 7 6 4 9 9 C 1.50702 * 109.54090 * 176.84866 * 7 6 4 10 10 O 1.21290 * 120.00141 * 0.44196 * 9 7 6 11 11 N 1.34778 * 119.99832 * 180.44440 * 9 7 6 12 12 C 1.37095 * 119.99705 * 179.97438 * 11 9 7 13 13 H 1.08000 * 120.00052 * 222.95549 * 12 11 9 14 14 C 1.38949 * 120.00120 * 42.95837 * 12 11 9 15 15 N 1.31407 * 120.00100 * 18.93115 * 14 12 11 16 16 Si 1.86808 * 120.00099 * 198.92299 * 14 12 11 17 17 H 1.48495 * 109.46604 * 90.00111 * 16 14 12 18 18 H 1.48497 * 109.47158 * 209.99991 * 16 14 12 19 19 H 1.48498 * 109.46922 * 330.00581 * 16 14 12 20 20 C 1.46495 * 119.99881 * 359.97438 * 11 9 7 21 21 C 1.53005 * 117.49747 * 186.84109 * 20 11 9 22 22 C 1.53003 * 60.00067 * 252.51128 * 21 20 11 23 23 C 1.53177 * 109.03740 * 56.97980 * 7 6 4 24 24 C 1.53090 * 109.16376 * 303.02195 * 23 7 6 25 25 O 1.42901 * 109.48163 * 59.99863 * 4 2 1 26 26 H 1.08998 * 109.47490 * 60.00395 * 1 2 3 27 27 H 1.09006 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47126 * 300.00007 * 1 2 3 29 29 H 1.09003 * 109.46867 * 239.99699 * 2 1 3 30 30 H 1.09003 * 109.47516 * 60.00097 * 3 2 1 31 31 H 1.09007 * 109.47408 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47323 * 299.99681 * 3 2 1 33 33 H 1.08997 * 109.52121 * 302.31435 * 6 4 2 34 34 H 1.08997 * 109.52001 * 62.50071 * 6 4 2 35 35 H 0.97003 * 120.00252 * 174.93262 * 15 14 12 36 36 H 1.08996 * 115.55251 * 332.55335 * 20 11 9 37 37 H 1.08996 * 117.49635 * 0.02562 * 21 20 11 38 38 H 1.08999 * 117.49552 * 145.01854 * 21 20 11 39 39 H 1.09000 * 117.49813 * 252.50636 * 22 21 20 40 40 H 1.08997 * 117.51325 * 107.47917 * 22 21 20 41 41 H 1.08992 * 109.52197 * 183.11181 * 23 7 6 42 42 H 1.09003 * 109.56784 * 62.95523 * 23 7 6 43 43 H 1.09002 * 109.47779 * 297.62192 * 24 23 7 44 44 H 1.08998 * 109.48794 * 177.59543 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6770 -0.2073 2.1394 6 6 3.5709 -0.7219 1.2491 7 6 4.0735 -1.4974 2.4708 8 1 3.7525 -0.9927 3.3821 9 6 5.5784 -1.5698 2.4379 10 8 6.1911 -1.0456 1.5318 11 7 6.2435 -2.2170 3.4153 12 6 7.6125 -2.2832 3.3851 13 1 8.1136 -3.2107 3.6197 14 6 8.3553 -1.1570 3.0526 15 7 7.8102 0.0361 3.1301 16 14 10.1291 -1.3391 2.4955 17 1 10.1706 -1.4969 1.0196 18 1 10.8972 -0.1296 2.8858 19 1 10.7294 -2.5356 3.1383 20 6 5.5034 -2.8496 4.5100 21 6 6.3159 -3.4287 5.6700 22 6 5.6364 -4.3655 4.6692 23 6 3.4915 -2.9140 2.4375 24 6 1.9636 -2.8286 2.3917 25 8 1.5637 -2.0686 1.2495 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 3.9349 -1.1995 0.3395 34 1 3.9356 0.3042 1.2938 35 1 8.3487 0.8268 2.9694 36 1 4.5381 -2.4016 4.7454 37 1 7.4009 -3.3385 5.6188 38 1 5.8851 -3.3615 6.6690 39 1 4.7587 -4.9148 5.0098 40 1 6.2742 -4.8921 3.9592 41 1 3.7994 -3.4553 3.3320 42 1 3.8538 -3.4368 1.5524 43 1 1.5994 -2.3426 3.2968 44 1 1.5452 -3.8328 2.3248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:51 Heat of formation + Delta-G solvation = -78.292957 kcal Electronic energy + Delta-G solvation = -23813.687469 eV Core-core repulsion = 20538.051132 eV Total energy + Delta-G solvation = -3275.636336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27868 -39.76962 -37.79187 -36.28826 -35.08152 -34.25512 -32.68873 -30.97896 -28.21713 -27.54521 -25.86972 -24.52919 -23.12704 -22.98881 -21.97971 -21.11364 -20.58409 -18.33407 -17.85059 -17.32239 -16.98101 -16.76100 -15.92211 -15.77758 -15.44795 -15.33238 -15.05140 -14.65634 -14.43508 -14.19470 -14.03077 -13.60690 -13.35576 -13.08076 -12.96143 -12.85085 -12.74555 -12.50334 -12.27622 -12.22753 -12.17904 -12.04665 -11.92360 -11.73260 -11.59946 -11.34313 -11.18741 -11.05765 -10.74779 -10.49544 -9.80576 -8.96170 -8.21503 -5.98108 1.32441 1.41244 1.45591 2.24201 2.39777 2.84280 3.04727 3.12045 3.35579 3.70440 3.84644 3.94166 3.99050 4.09125 4.13745 4.15547 4.24658 4.33242 4.38508 4.43500 4.52113 4.60142 4.70258 4.80360 4.82796 4.83582 4.89982 4.90416 5.01545 5.05177 5.09477 5.14410 5.22746 5.26807 5.32707 5.34942 5.44660 5.46767 5.49457 5.51724 6.19088 6.35279 7.03179 7.21943 7.71266 8.38286 8.87361 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.005883 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.165939 B = 4758.172227 C = 5896.463720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.105 3.895 5 H 0.067 0.933 6 C -0.115 4.115 7 C -0.094 4.094 8 H 0.086 0.914 9 C 0.471 3.529 10 O -0.589 6.589 11 N -0.442 5.442 12 C -0.356 4.356 13 H 0.077 0.923 14 C 0.021 3.979 15 N -0.871 5.871 16 Si 0.967 3.033 17 H -0.294 1.294 18 H -0.280 1.280 19 H -0.253 1.253 20 C 0.047 3.953 21 C -0.175 4.175 22 C -0.178 4.178 23 C -0.144 4.144 24 C 0.066 3.934 25 O -0.389 6.389 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.258 0.742 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -3.919 1.824 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.048 3.952 5 H 0.085 0.915 6 C -0.153 4.153 7 C -0.116 4.116 8 H 0.105 0.895 9 C 0.260 3.740 10 O -0.471 6.471 11 N -0.162 5.162 12 C -0.484 4.484 13 H 0.094 0.906 14 C -0.185 4.185 15 N -0.507 5.507 16 Si 0.792 3.208 17 H -0.221 1.221 18 H -0.206 1.206 19 H -0.177 1.177 20 C -0.058 4.058 21 C -0.213 4.213 22 C -0.217 4.217 23 C -0.182 4.182 24 C -0.010 4.010 25 O -0.309 6.309 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.096 0.904 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.813 -3.534 1.147 15.272 hybrid contribution 1.882 0.423 -0.191 1.938 sum -12.932 -3.111 0.956 13.335 Atomic orbital electron populations 1.21699 0.92908 1.02233 1.02277 1.21092 0.97625 0.95671 0.96262 1.21860 1.00492 0.95025 1.03029 1.22140 0.90677 0.83337 0.99075 0.91506 1.21892 0.96558 0.99926 0.96947 1.21193 0.91895 0.98739 0.99724 0.89543 1.20687 0.89567 0.81570 0.82163 1.90469 1.70668 1.48163 1.37787 1.42984 1.04695 1.49756 1.18762 1.19096 0.81707 0.95982 1.51611 0.90554 1.26009 1.02510 0.94458 0.95493 1.69938 1.37762 0.98125 1.44836 0.85359 0.79085 0.78321 0.77987 1.22071 1.20574 1.17681 1.22019 0.97445 0.94078 0.92254 1.23166 0.99669 1.03660 0.94793 1.23355 1.03607 0.92558 1.02175 1.22353 0.97589 0.94465 1.03747 1.22737 0.91975 0.97439 0.88827 1.87850 1.74216 1.23618 1.45184 0.91599 0.92376 0.92121 0.91864 0.91671 0.94149 0.90667 0.93748 0.92459 0.93281 0.85525 0.90388 0.86373 0.85270 0.90928 0.88043 0.93332 0.91340 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.05 71.98 0.65 -2.02 16 2 C -0.09 -2.22 2.72 -10.80 -0.03 -2.25 16 3 C -0.15 -3.53 8.84 71.98 0.64 -2.90 16 4 C 0.11 3.03 2.22 30.63 0.07 3.10 16 5 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.11 -4.35 3.58 30.69 0.11 -4.24 16 7 C -0.09 -3.65 1.82 -11.42 -0.02 -3.67 16 8 H 0.09 3.14 7.58 -2.38 -0.02 3.12 16 9 C 0.47 24.57 6.38 87.66 0.56 25.13 16 10 O -0.59 -36.83 13.63 -3.06 -0.04 -36.87 16 11 N -0.44 -22.24 2.85 -613.13 -1.75 -23.99 16 12 C -0.36 -19.93 7.86 84.04 0.66 -19.27 16 13 H 0.08 4.14 7.36 -2.91 -0.02 4.12 16 14 C 0.02 1.24 4.36 84.93 0.37 1.61 16 15 N -0.87 -54.05 11.67 21.66 0.25 -53.80 16 16 Si 0.97 46.79 29.60 68.60 2.03 48.83 16 17 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.25 -11.21 7.11 99.48 0.71 -10.50 16 20 C 0.05 1.76 4.31 45.00 0.19 1.95 16 21 C -0.18 -5.86 9.80 30.60 0.30 -5.56 16 22 C -0.18 -5.39 9.41 30.60 0.29 -5.11 16 23 C -0.14 -4.44 5.02 30.68 0.15 -4.28 16 24 C 0.07 1.57 6.84 72.01 0.49 2.07 16 25 O -0.39 -10.98 9.73 -148.98 -1.45 -12.43 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.21 7.68 -2.38 -0.02 1.19 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.17 6.49 -2.38 -0.02 1.15 16 32 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.04 1.90 8.03 -2.39 -0.02 1.88 16 34 H 0.06 2.37 6.57 -2.39 -0.02 2.36 16 35 H 0.26 15.46 8.32 -92.71 -0.77 14.69 16 36 H 0.13 4.09 6.25 -2.39 -0.01 4.07 16 37 H 0.08 3.08 6.80 -2.39 -0.02 3.07 16 38 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.10 2.83 4.45 -2.39 -0.01 2.82 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -74.63 338.26 4.44 -70.19 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.97 Total: 23.50 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.43 Total: -15.43 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.50 Total: -77.78 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -1.49 Total: -49.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.83 kcal Total: -74.63 4.44 -70.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.106 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds