Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 N 1.46496 * 109.47192 * 120.00264 * 2 1 3 5 5 C 1.46499 * 120.00211 * 115.47806 * 4 2 1 6 6 C 1.50702 * 109.47331 * 90.24123 * 5 4 2 7 7 H 1.08011 * 119.99658 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00523 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00062 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99782 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47092 * 89.99702 * 10 8 6 12 12 H 1.48501 * 109.46874 * 329.99803 * 10 8 6 13 13 H 1.48493 * 109.47071 * 209.99603 * 10 8 6 14 14 C 1.34783 * 119.99848 * 295.47636 * 4 2 1 15 15 O 1.21277 * 120.00122 * 5.20328 * 14 4 2 16 16 C 1.50697 * 119.99934 * 185.20442 * 14 4 2 17 17 H 1.09000 * 109.41296 * 330.46116 * 16 14 4 18 18 C 1.52954 * 109.41743 * 90.31989 * 16 14 4 19 19 C 1.53229 * 109.40674 * 183.70437 * 18 16 14 20 20 C 1.51265 * 108.53456 * 305.37127 * 19 18 16 21 21 O 1.20763 * 120.84806 * 231.37004 * 20 19 18 22 22 C 1.51265 * 118.30186 * 51.35031 * 20 19 18 23 23 H 1.09002 * 109.62550 * 188.93576 * 22 20 19 24 24 C 1.52998 * 109.62497 * 68.55424 * 22 20 19 25 25 C 1.52965 * 109.41297 * 210.60456 * 16 14 4 26 26 H 1.08997 * 109.47063 * 297.38606 * 1 2 3 27 27 H 1.09001 * 109.47355 * 57.38768 * 1 2 3 28 28 H 1.08998 * 109.47098 * 177.39081 * 1 2 3 29 29 H 1.09002 * 109.46763 * 240.00123 * 2 1 3 30 30 H 1.09000 * 109.46846 * 184.61080 * 3 2 1 31 31 H 1.09001 * 109.46934 * 304.60882 * 3 2 1 32 32 H 1.08997 * 109.46875 * 64.60622 * 3 2 1 33 33 H 1.08995 * 109.47028 * 330.24358 * 5 4 2 34 34 H 1.08999 * 109.47405 * 210.23934 * 5 4 2 35 35 H 0.97008 * 119.99275 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.48254 * 303.68863 * 18 16 14 37 37 H 1.09001 * 109.48239 * 63.72108 * 18 16 14 38 38 H 1.08995 * 109.62460 * 65.09138 * 19 18 16 39 39 H 1.09005 * 109.62430 * 185.46993 * 19 18 16 40 40 H 1.09006 * 109.47325 * 60.00220 * 24 22 20 41 41 H 1.09005 * 109.47136 * 179.97438 * 24 22 20 42 42 H 1.08996 * 109.47466 * 300.00434 * 24 22 20 43 43 H 1.08999 * 109.47981 * 296.27543 * 25 16 14 44 44 H 1.09002 * 109.48323 * 56.31491 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7770 -1.9369 1.0639 6 6 4.2470 -1.6215 0.9599 7 1 4.5825 -0.5952 0.9897 8 6 5.1636 -2.6428 0.8278 9 7 6.4464 -2.3675 0.7365 10 14 4.5834 -4.4177 0.7769 11 1 4.3149 -4.8106 -0.6298 12 1 3.3387 -4.5546 1.5753 13 1 5.6352 -5.2988 1.3448 14 6 1.7696 -0.1795 2.4182 15 8 1.0626 0.7991 2.5338 16 6 2.3700 -0.8239 3.6409 17 1 2.5037 -1.8904 3.4597 18 6 3.7275 -0.1846 3.9379 19 6 4.3792 -0.9018 5.1248 20 6 3.4129 -0.8818 6.2884 21 8 3.7627 -0.4937 7.3772 22 6 1.9971 -1.3597 6.0532 23 1 1.3861 -1.1391 6.9285 24 6 2.0000 -2.8677 5.7953 25 6 1.4325 -0.6243 4.8330 26 1 -0.3633 0.4727 0.9125 27 1 -0.3634 0.5539 -0.8656 28 1 -0.3633 -1.0266 -0.0468 29 1 1.8933 -0.5138 -0.8900 30 1 3.1269 1.4436 -0.0826 31 1 1.6108 1.9796 -0.8458 32 1 1.7456 1.9319 0.9284 33 1 2.4545 -2.4652 0.1668 34 1 2.6010 -2.5639 1.9380 35 1 7.0912 -3.0862 0.6432 36 1 4.3703 -0.2730 3.0621 37 1 3.5878 0.8686 4.1817 38 1 4.6022 -1.9332 4.8517 39 1 5.3005 -0.3890 5.4014 40 1 2.4171 -3.3835 6.6602 41 1 0.9788 -3.2095 5.6266 42 1 2.6061 -3.0848 4.9158 43 1 1.3483 0.4395 5.0552 44 1 0.4477 -1.0247 4.5921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142685208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -93.682571 kcal Electronic energy + Delta-G solvation = -24097.278677 eV Core-core repulsion = 20820.974998 eV Total energy + Delta-G solvation = -3276.303680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38155 -39.17157 -36.42646 -35.36455 -33.27116 -32.30727 -31.59335 -29.33910 -27.60047 -26.70689 -26.04237 -23.11156 -22.61160 -22.26584 -20.94036 -18.33445 -18.05025 -17.08721 -16.40944 -15.89200 -15.30341 -15.16925 -14.72486 -14.39439 -14.18378 -14.02369 -13.45329 -13.17161 -13.14353 -12.86276 -12.69254 -12.50334 -12.40414 -12.14008 -11.85901 -11.77906 -11.51540 -11.45060 -11.22685 -11.06276 -10.92185 -10.87819 -10.75924 -10.55560 -10.39235 -10.32276 -9.98548 -9.64653 -9.06761 -8.83225 -8.71943 -7.78320 -6.28206 -4.29436 2.13145 3.10930 3.18055 3.21744 3.27026 3.75650 4.19547 4.25176 4.77893 4.91222 4.99902 5.02243 5.18144 5.29385 5.40346 5.49232 5.56464 5.61760 5.65162 5.71284 5.76643 5.81295 5.91768 5.99005 6.04423 6.06896 6.10955 6.16960 6.26028 6.29344 6.37359 6.39607 6.45042 6.51509 6.65402 6.68509 6.80695 6.82805 7.35221 7.41189 7.65730 8.09557 8.36629 8.76119 8.91117 9.31250 10.83687 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.008645 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.579846 B = 3238.194741 C = 4621.957918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 C -0.167 4.167 4 N -0.586 5.586 5 C 0.205 3.795 6 C -0.537 4.537 7 H 0.082 0.918 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.866 3.134 11 H -0.275 1.275 12 H -0.264 1.264 13 H -0.283 1.283 14 C 0.527 3.473 15 O -0.564 6.564 16 C -0.110 4.110 17 H 0.103 0.897 18 C -0.102 4.102 19 C -0.162 4.162 20 C 0.369 3.631 21 O -0.469 6.469 22 C -0.138 4.138 23 H 0.091 0.909 24 C -0.146 4.146 25 C -0.092 4.092 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 -0.588 3.740 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 C -0.225 4.225 4 N -0.316 5.316 5 C 0.084 3.916 6 C -0.575 4.575 7 H 0.100 0.900 8 C -0.125 4.125 9 N -0.525 5.525 10 Si 0.692 3.308 11 H -0.200 1.200 12 H -0.188 1.188 13 H -0.209 1.209 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.130 4.130 17 H 0.121 0.879 18 C -0.140 4.140 19 C -0.200 4.200 20 C 0.245 3.755 21 O -0.343 6.343 22 C -0.157 4.157 23 H 0.110 0.890 24 C -0.203 4.203 25 C -0.130 4.130 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.678 0.022 4.318 9.693 hybrid contribution 0.006 -1.224 -0.334 1.268 sum -8.673 -1.202 3.984 9.619 Atomic orbital electron populations 1.22208 0.96078 1.01287 1.02818 1.20849 0.93175 0.93473 0.88059 1.22164 1.01390 0.96164 1.02774 1.48033 1.53202 1.25655 1.04699 1.19898 0.92535 0.81939 0.97247 1.21344 0.88554 0.95833 1.51802 0.90045 1.24850 0.94726 0.98620 0.94338 1.69883 1.00932 1.32879 1.48772 0.87015 0.79060 0.85582 0.79106 1.20011 1.18846 1.20902 1.20269 0.79950 0.83685 0.84536 1.90533 1.39544 1.27698 1.86720 1.21376 0.96098 1.02717 0.92848 0.87934 1.21486 0.95156 0.98254 0.99087 1.22244 0.98661 1.04189 0.94924 1.25058 0.90677 0.71325 0.88397 1.90359 1.80000 1.36228 1.27672 1.21934 0.95716 0.97585 1.00488 0.89044 1.21813 1.03144 0.92820 1.02530 1.21449 0.98420 1.01129 0.92018 0.90757 0.92622 0.93343 0.89877 0.92383 0.92925 0.90516 0.95401 0.94744 0.92344 0.87076 0.92050 0.87823 0.89281 0.92388 0.91407 0.91081 0.90617 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.22 37.16 0.34 -2.16 16 2 C 0.15 2.54 3.27 -67.93 -0.22 2.32 16 3 C -0.17 -2.82 9.12 37.16 0.34 -2.48 16 4 N -0.59 -11.01 2.41 -167.47 -0.40 -11.41 16 5 C 0.21 4.14 3.93 -5.19 -0.02 4.12 16 6 C -0.54 -12.74 8.54 -34.44 -0.29 -13.03 16 7 H 0.08 2.17 7.47 -52.48 -0.39 1.78 16 8 C 0.08 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.89 -24.06 13.96 55.43 0.77 -23.29 16 10 Si 0.87 18.50 27.47 -169.99 -4.67 13.83 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.26 -5.23 6.54 56.52 0.37 -4.86 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.53 9.74 6.11 -10.98 -0.07 9.67 16 15 O -0.56 -11.20 12.45 5.56 0.07 -11.13 16 16 C -0.11 -1.78 1.76 -91.81 -0.16 -1.94 16 17 H 0.10 1.66 4.06 -51.93 -0.21 1.45 16 18 C -0.10 -1.70 5.19 -26.64 -0.14 -1.84 16 19 C -0.16 -2.47 5.90 -27.49 -0.16 -2.63 16 20 C 0.37 5.61 6.06 -28.48 -0.17 5.44 16 21 O -0.47 -8.38 17.89 6.00 0.11 -8.28 16 22 C -0.14 -1.79 3.16 -91.37 -0.29 -2.08 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.15 -1.67 8.91 37.16 0.33 -1.34 16 25 C -0.09 -1.30 4.23 -26.63 -0.11 -1.42 16 26 H 0.07 1.24 6.27 -51.93 -0.33 0.92 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.41 7.83 -51.93 -0.41 1.01 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.41 5.90 -51.93 -0.31 1.11 16 33 H 0.03 0.56 7.38 -51.93 -0.38 0.18 16 34 H 0.03 0.67 4.96 -51.93 -0.26 0.42 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.11 2.17 5.98 -51.93 -0.31 1.86 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.52 7.82 -51.93 -0.41 1.12 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.86 6.00 -51.93 -0.31 0.55 16 43 H 0.08 1.14 7.98 -51.93 -0.41 0.73 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -27.59 337.17 -6.88 -34.47 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.12 Total: 6.23 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.72 Total: -5.52 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.37 Total: -34.70 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.18 Total: -19.41 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.67 Total: 13.83 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.59 -6.88 -34.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.210 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds