Wall clock time and date at job start Tue Mar 31 2020 06:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46809 * 2 1 4 4 N 1.46495 * 109.47193 * 119.99915 * 2 1 3 5 5 C 1.46506 * 119.99963 * 305.18017 * 4 2 1 6 6 C 1.50693 * 109.47103 * 269.99960 * 5 4 2 7 7 H 1.08000 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00007 * 179.72825 * 6 5 4 9 9 N 1.31515 * 119.99965 * 180.27571 * 8 6 5 10 10 Si 1.86794 * 120.00105 * 0.26948 * 8 6 5 11 11 H 1.48499 * 109.47113 * 90.00227 * 10 8 6 12 12 H 1.48506 * 109.47356 * 210.00555 * 10 8 6 13 13 H 1.48508 * 109.47005 * 330.00474 * 10 8 6 14 14 C 1.34775 * 119.99912 * 125.17667 * 4 2 1 15 15 O 1.21282 * 119.99700 * 175.45191 * 14 4 2 16 16 C 1.50695 * 120.00243 * 355.45259 * 14 4 2 17 17 H 1.09002 * 109.41395 * 35.64815 * 16 14 4 18 18 C 1.52963 * 109.41355 * 275.79318 * 16 14 4 19 19 C 1.53242 * 109.39777 * 176.22617 * 18 16 14 20 20 C 1.51266 * 108.48463 * 54.73126 * 19 18 16 21 21 O 1.20760 * 120.85284 * 128.59098 * 20 19 18 22 22 C 1.51267 * 118.30090 * 308.61043 * 20 19 18 23 23 H 1.09006 * 109.62692 * 171.06311 * 22 20 19 24 24 C 1.53001 * 109.78628 * 291.53808 * 22 20 19 25 25 C 1.52960 * 109.41516 * 155.50911 * 16 14 4 26 26 H 1.08996 * 109.47368 * 300.00347 * 1 2 3 27 27 H 1.09004 * 109.47167 * 60.00229 * 1 2 3 28 28 H 1.09002 * 109.47186 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47103 * 240.00123 * 2 1 3 30 30 H 1.09004 * 109.46730 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47179 * 299.99115 * 3 2 1 32 32 H 1.08994 * 109.47188 * 60.00174 * 3 2 1 33 33 H 1.09000 * 109.47206 * 149.99543 * 5 4 2 34 34 H 1.09003 * 109.47034 * 30.00206 * 5 4 2 35 35 H 0.97003 * 119.99962 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47739 * 296.27528 * 18 16 14 37 37 H 1.08998 * 109.48109 * 56.31070 * 18 16 14 38 38 H 1.09001 * 109.68274 * 295.01443 * 19 18 16 39 39 H 1.09001 * 109.77368 * 174.50059 * 19 18 16 40 40 H 1.09004 * 109.47303 * 179.13952 * 24 22 20 41 41 H 1.08994 * 109.47496 * 299.14355 * 24 22 20 42 42 H 1.09001 * 109.46589 * 59.14124 * 24 22 20 43 43 H 1.09000 * 109.47964 * 303.68292 * 25 16 14 44 44 H 1.08998 * 109.48446 * 63.71029 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5733 -0.2596 2.5238 6 6 2.5156 0.7906 3.0530 7 1 3.3616 1.1053 2.4600 8 6 2.2948 1.3534 4.2921 9 7 3.1141 2.2739 4.7517 10 14 0.8320 0.8088 5.3182 11 1 1.2306 -0.3312 6.1824 12 1 0.3752 1.9380 6.1676 13 1 -0.2728 0.3865 4.4201 14 6 2.8770 -1.7224 1.0752 15 8 3.3453 -2.2408 2.0665 16 6 3.2550 -2.2319 -0.2917 17 1 3.3118 -1.3947 -0.9875 18 6 2.1958 -3.2239 -0.7754 19 6 2.5305 -3.6700 -2.2027 20 6 3.9428 -4.2116 -2.2172 21 8 4.1855 -5.2956 -2.6908 22 6 5.0433 -3.3607 -1.6230 23 1 5.9634 -3.9421 -1.5625 24 6 5.2724 -2.1259 -2.4969 25 6 4.6167 -2.9246 -0.2174 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.5656 -1.1147 3.1997 34 1 0.5684 0.1564 2.4528 35 1 2.9586 2.6701 5.6233 36 1 2.1825 -4.0916 -0.1158 37 1 1.2171 -2.7443 -0.7654 38 1 2.4577 -2.8189 -2.8799 39 1 1.8363 -4.4491 -2.5178 40 1 6.0555 -1.5090 -2.0561 41 1 5.5757 -2.4390 -3.4959 42 1 4.3492 -1.5501 -2.5613 43 1 5.3549 -2.2327 0.1882 44 1 4.5449 -3.7994 0.4288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142685209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:00 Heat of formation + Delta-G solvation = -90.780935 kcal Electronic energy + Delta-G solvation = -23669.680365 eV Core-core repulsion = 20393.502509 eV Total energy + Delta-G solvation = -3276.177855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62044 -39.19654 -36.62006 -35.92656 -32.89535 -32.56459 -31.02625 -30.05068 -27.96394 -26.84685 -26.18391 -23.28713 -22.86442 -21.88573 -21.10602 -18.70616 -18.06615 -17.03582 -16.87104 -16.15943 -15.56982 -15.07663 -14.92296 -14.63446 -14.23499 -14.05056 -13.65663 -13.56816 -13.27271 -13.01588 -12.75187 -12.54223 -12.42354 -12.17687 -12.07600 -11.85194 -11.74534 -11.59189 -11.46416 -11.12920 -11.06073 -10.94185 -10.88055 -10.64263 -10.47381 -10.21815 -10.10835 -9.46930 -9.43875 -8.92663 -8.57852 -7.73058 -6.08149 -4.05335 1.80902 3.26674 3.27605 3.33390 3.36041 3.70864 3.92599 4.39256 4.46464 4.56640 4.72244 4.80038 4.92619 5.04661 5.12406 5.21247 5.24865 5.25719 5.33361 5.41480 5.45776 5.54859 5.62889 5.67702 5.73892 5.84462 5.86329 5.92827 5.96705 6.05969 6.20027 6.21733 6.26753 6.28324 6.47213 6.76406 6.93857 6.96098 7.33528 7.35329 7.62330 8.25795 8.47914 8.93461 8.98787 9.52684 11.05092 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024295 B = 0.004931 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.202407 B = 5676.652531 C = 5863.541367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.160 4.160 4 N -0.587 5.587 5 C 0.214 3.786 6 C -0.520 4.520 7 H 0.077 0.923 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.537 6.537 16 C -0.117 4.117 17 H 0.098 0.902 18 C -0.103 4.103 19 C -0.167 4.167 20 C 0.369 3.631 21 O -0.462 6.462 22 C -0.139 4.139 23 H 0.096 0.904 24 C -0.143 4.143 25 C -0.092 4.092 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -6.422 -16.120 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 C -0.218 4.218 4 N -0.318 5.318 5 C 0.094 3.906 6 C -0.558 4.558 7 H 0.095 0.905 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.298 3.702 15 O -0.413 6.413 16 C -0.138 4.138 17 H 0.116 0.884 18 C -0.141 4.141 19 C -0.204 4.204 20 C 0.245 3.755 21 O -0.335 6.335 22 C -0.159 4.159 23 H 0.114 0.886 24 C -0.201 4.201 25 C -0.130 4.130 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.565 -7.140 -15.660 17.401 hybrid contribution -0.721 0.070 0.736 1.032 sum -3.286 -7.070 -14.924 16.838 Atomic orbital electron populations 1.22182 0.95554 1.01798 1.02621 1.21094 0.94104 0.94230 0.87891 1.22178 1.01556 0.95557 1.02506 1.48022 1.44752 1.31038 1.07980 1.19641 0.95509 0.95950 0.79525 1.21321 1.11759 1.19916 1.02820 0.90524 1.24849 0.96228 0.94745 0.97236 1.69892 1.37234 1.27398 1.19172 0.86917 0.83493 0.78605 0.81046 1.20031 1.21175 1.19157 1.20178 0.79320 0.80451 0.90232 1.90682 1.52555 1.58625 1.39484 1.21475 0.96367 0.99323 0.96633 0.88438 1.21462 0.98838 0.99360 0.94412 1.22303 0.95761 1.03323 0.99055 1.24935 0.92127 0.85556 0.72909 1.90391 1.85957 1.21343 1.35824 1.21970 0.98707 0.98215 0.96970 0.88594 1.21796 1.02995 0.96238 0.99036 1.21422 0.95807 1.01734 0.94040 0.91384 0.92001 0.92823 0.90246 0.92626 0.93193 0.89888 0.94961 0.95036 0.92661 0.90668 0.90035 0.88140 0.89105 0.90945 0.92362 0.91616 0.89916 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.06 37.16 0.34 -1.74 16 2 C 0.13 1.89 2.95 -67.93 -0.20 1.69 16 3 C -0.16 -2.47 8.61 37.16 0.32 -2.15 16 4 N -0.59 -11.14 2.39 -167.47 -0.40 -11.54 16 5 C 0.21 4.98 3.76 -5.19 -0.02 4.96 16 6 C -0.52 -14.24 8.41 -34.44 -0.29 -14.53 16 7 H 0.08 2.30 7.83 -52.49 -0.41 1.89 16 8 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 9 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 10 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 14 C 0.51 9.64 6.77 -10.99 -0.07 9.56 16 15 O -0.54 -12.63 15.78 5.56 0.09 -12.54 16 16 C -0.12 -1.52 1.42 -91.81 -0.13 -1.65 16 17 H 0.10 1.08 4.52 -51.93 -0.23 0.84 16 18 C -0.10 -1.11 5.04 -26.62 -0.13 -1.25 16 19 C -0.17 -1.51 5.90 -27.48 -0.16 -1.67 16 20 C 0.37 4.21 6.07 -28.48 -0.17 4.04 16 21 O -0.46 -6.76 17.89 6.00 0.11 -6.65 16 22 C -0.14 -1.46 3.16 -91.38 -0.29 -1.75 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 24 C -0.14 -1.22 8.90 37.16 0.33 -0.89 16 25 C -0.09 -1.18 4.14 -26.63 -0.11 -1.29 16 26 H 0.07 1.00 6.52 -51.93 -0.34 0.66 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.90 5.09 -51.93 -0.26 0.64 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 33 H 0.03 0.82 6.92 -51.93 -0.36 0.46 16 34 H 0.03 0.70 5.22 -51.93 -0.27 0.43 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.81 7.84 -51.93 -0.41 0.40 16 38 H 0.10 0.68 7.81 -51.93 -0.41 0.28 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.50 6.00 -51.93 -0.31 0.19 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.11 7.99 -51.93 -0.42 0.70 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -33.60 340.30 -6.84 -40.43 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.17 Total: -0.26 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -0.69 Total: -4.72 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.37 Total: -37.89 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.19 Total: -19.20 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.60 -6.84 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.346 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds