Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 N 1.46499 * 109.46887 * 119.99991 * 2 1 3 5 5 C 1.46504 * 119.99886 * 119.60161 * 4 2 1 6 6 C 1.50699 * 109.46992 * 263.86075 * 5 4 2 7 7 H 1.08007 * 119.99958 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00318 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00246 * 180.02562 * 8 6 5 10 10 Si 1.86805 * 119.99859 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46891 * 90.00091 * 10 8 6 12 12 H 1.48499 * 109.47385 * 210.00311 * 10 8 6 13 13 H 1.48503 * 109.47133 * 330.00672 * 10 8 6 14 14 C 1.34775 * 120.00026 * 299.59522 * 4 2 1 15 15 O 1.21282 * 120.00074 * 3.98667 * 14 4 2 16 16 C 1.50704 * 119.99849 * 183.99262 * 14 4 2 17 17 H 1.09004 * 109.41059 * 309.42387 * 16 14 4 18 18 C 1.52956 * 109.41811 * 69.28633 * 16 14 4 19 19 C 1.53222 * 109.40432 * 183.63586 * 18 16 14 20 20 C 1.51271 * 108.69527 * 305.27309 * 19 18 16 21 21 O 1.20761 * 120.84981 * 231.41882 * 20 19 18 22 22 C 1.51660 * 118.04674 * 51.27059 * 20 19 18 23 23 H 1.09004 * 109.75558 * 68.60632 * 22 20 19 24 24 C 1.53000 * 109.55528 * 189.01918 * 22 20 19 25 25 C 1.52956 * 109.35579 * 189.60810 * 16 14 4 26 26 H 1.09003 * 109.47285 * 306.80550 * 1 2 3 27 27 H 1.08994 * 109.47309 * 66.81384 * 1 2 3 28 28 H 1.09000 * 109.47021 * 186.80858 * 1 2 3 29 29 H 1.09000 * 109.47205 * 240.00026 * 2 1 3 30 30 H 1.09000 * 109.47124 * 182.83309 * 3 2 1 31 31 H 1.09003 * 109.46752 * 302.83624 * 3 2 1 32 32 H 1.09000 * 109.47230 * 62.83315 * 3 2 1 33 33 H 1.09001 * 109.46967 * 23.86019 * 5 4 2 34 34 H 1.08997 * 109.47020 * 143.85962 * 5 4 2 35 35 H 0.97006 * 119.99692 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.48201 * 63.65249 * 18 16 14 37 37 H 1.09002 * 109.48070 * 303.61466 * 18 16 14 38 38 H 1.08997 * 109.62992 * 65.08668 * 19 18 16 39 39 H 1.09007 * 109.62442 * 185.46653 * 19 18 16 40 40 H 1.09004 * 109.47295 * 179.12747 * 24 22 20 41 41 H 1.09005 * 109.47529 * 299.12800 * 24 22 20 42 42 H 1.08995 * 109.47286 * 59.12878 * 24 22 20 43 43 H 1.09007 * 109.48181 * 296.30944 * 25 16 14 44 44 H 1.08997 * 109.48718 * 56.33104 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8533 -1.8868 1.0618 6 6 1.9900 -3.1171 1.1726 7 1 0.9258 -3.0178 1.3281 8 6 2.5588 -4.3694 1.0767 9 7 1.8053 -5.4430 1.1729 10 14 4.3995 -4.5411 0.8085 11 1 5.0877 -4.6018 2.1230 12 1 4.6749 -5.7863 0.0476 13 1 4.8993 -3.3717 0.0417 14 6 1.6994 -0.2254 2.4202 15 8 0.9497 0.7212 2.5329 16 6 2.2746 -0.8815 3.6490 17 1 2.1144 -1.9583 3.5934 18 6 3.7750 -0.5938 3.7240 19 6 4.3762 -1.3354 4.9225 20 6 3.6084 -0.9483 6.1670 21 8 4.1849 -0.5603 7.1547 22 6 2.0962 -1.0590 6.1353 23 1 1.8044 -2.1083 6.0908 24 6 1.5091 -0.4153 7.3930 25 6 1.5776 -0.3275 4.8928 26 1 -0.3634 0.6157 0.8228 27 1 -0.3633 0.4046 -0.9446 28 1 -0.3633 -1.0204 0.1218 29 1 1.8934 -0.5138 -0.8900 30 1 3.1288 1.4429 -0.0508 31 1 1.6357 1.9707 -0.8635 32 1 1.7187 1.9415 0.9143 33 1 3.3487 -1.8769 0.0909 34 1 3.6035 -1.8969 1.8524 35 1 2.2055 -6.3240 1.1050 36 1 3.9342 0.4780 3.8424 37 1 4.2566 -0.9340 2.8072 38 1 4.2985 -2.4110 4.7641 39 1 5.4239 -1.0570 5.0372 40 1 0.4215 -0.4818 7.3614 41 1 1.8795 -0.9375 8.2753 42 1 1.8078 0.6319 7.4386 43 1 1.7887 0.7380 4.9836 44 1 0.5018 -0.4786 4.8043 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142685210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -92.698971 kcal Electronic energy + Delta-G solvation = -23870.961652 eV Core-core repulsion = 20594.700624 eV Total energy + Delta-G solvation = -3276.261028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37515 -39.21996 -36.25815 -35.37177 -33.36764 -32.72378 -31.55335 -29.27545 -27.58656 -26.69904 -26.07527 -23.34645 -22.42211 -21.89462 -20.90924 -18.91017 -18.05848 -17.06475 -16.14951 -15.91127 -15.63832 -15.41304 -14.79506 -14.43221 -14.23528 -13.92678 -13.56370 -13.25423 -13.04887 -12.72500 -12.63717 -12.53653 -12.31399 -12.12471 -11.99048 -11.70064 -11.52038 -11.41988 -11.31788 -11.03509 -10.89294 -10.83671 -10.74579 -10.67690 -10.40383 -10.31583 -10.24013 -9.64844 -9.17489 -8.82858 -8.73979 -7.76390 -6.27599 -4.29018 2.06929 3.10092 3.18863 3.21462 3.30336 3.76105 4.14527 4.19808 4.76027 4.87735 4.91615 5.03061 5.07660 5.28460 5.33754 5.42307 5.52046 5.58700 5.62588 5.68947 5.74013 5.83574 5.90537 5.98752 6.02518 6.03524 6.04605 6.12938 6.15167 6.24185 6.26576 6.40255 6.40618 6.49015 6.56577 6.65680 6.69712 6.84838 7.38181 7.40455 7.60236 8.12150 8.36744 8.78079 8.93015 9.31728 10.84825 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.007808 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.188453 B = 3585.099354 C = 4927.313109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.587 5.587 5 C 0.198 3.802 6 C -0.540 4.540 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.889 5.889 10 Si 0.866 3.134 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.264 1.264 14 C 0.530 3.470 15 O -0.564 6.564 16 C -0.116 4.116 17 H 0.120 0.880 18 C -0.108 4.108 19 C -0.170 4.170 20 C 0.369 3.631 21 O -0.463 6.463 22 C -0.143 4.143 23 H 0.108 0.892 24 C -0.137 4.137 25 C -0.083 4.083 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 8.267 3.551 9.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.224 4.224 4 N -0.317 5.317 5 C 0.077 3.923 6 C -0.578 4.578 7 H 0.097 0.903 8 C -0.127 4.127 9 N -0.527 5.527 10 Si 0.692 3.308 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.319 3.681 15 O -0.445 6.445 16 C -0.137 4.137 17 H 0.138 0.862 18 C -0.146 4.146 19 C -0.207 4.207 20 C 0.245 3.755 21 O -0.337 6.337 22 C -0.162 4.162 23 H 0.126 0.874 24 C -0.194 4.194 25 C -0.121 4.121 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.746 8.748 4.093 10.041 hybrid contribution 0.957 -0.666 -0.463 1.255 sum 3.703 8.082 3.630 9.602 Atomic orbital electron populations 1.22161 0.95365 1.02906 1.01733 1.20863 0.94593 0.92197 0.87957 1.22196 1.00361 0.96919 1.02947 1.48017 1.50967 1.28214 1.04540 1.20081 0.91143 0.83359 0.97677 1.21390 0.96498 0.88676 1.51220 0.90315 1.24872 0.97705 0.95707 0.94374 1.69890 1.35605 0.98065 1.49097 0.87007 0.86158 0.78423 0.79172 1.19686 1.20891 1.18864 1.20193 0.80517 0.82895 0.84512 1.90542 1.37407 1.29649 1.86856 1.21402 0.95155 1.04062 0.93077 0.86194 1.21635 0.94279 1.00381 0.98284 1.22326 1.00501 1.03424 0.94492 1.25039 0.91834 0.71193 0.87443 1.90349 1.73002 1.35023 1.35335 1.21996 0.93838 1.02941 0.97413 0.87404 1.21630 1.00624 1.00955 0.96191 1.21338 1.00827 0.99590 0.90338 0.90819 0.93145 0.92135 0.90078 0.93321 0.92501 0.90719 0.94945 0.94391 0.92341 0.91531 0.89154 0.87677 0.89388 0.91905 0.92265 0.92448 0.91166 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.01 37.16 0.33 -2.47 16 2 C 0.15 2.54 3.28 -67.93 -0.22 2.32 16 3 C -0.17 -2.49 9.15 37.16 0.34 -2.15 16 4 N -0.59 -11.12 2.42 -167.47 -0.41 -11.52 16 5 C 0.20 4.05 3.80 -5.19 -0.02 4.03 16 6 C -0.54 -13.30 9.16 -34.44 -0.32 -13.62 16 7 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 8 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.89 -24.74 13.96 55.43 0.77 -23.97 16 10 Si 0.87 18.70 27.47 -169.99 -4.67 14.03 16 11 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.26 -5.39 6.54 56.52 0.37 -5.02 16 14 C 0.53 9.88 6.29 -10.98 -0.07 9.81 16 15 O -0.56 -11.26 12.31 5.56 0.07 -11.19 16 16 C -0.12 -1.88 1.62 -91.81 -0.15 -2.02 16 17 H 0.12 2.14 7.08 -51.93 -0.37 1.77 16 18 C -0.11 -1.54 4.88 -26.64 -0.13 -1.67 16 19 C -0.17 -2.24 6.15 -27.49 -0.17 -2.41 16 20 C 0.37 5.25 6.60 -28.28 -0.19 5.07 16 21 O -0.46 -7.68 16.91 6.00 0.10 -7.58 16 22 C -0.14 -1.88 3.01 -91.18 -0.27 -2.15 16 23 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.14 -1.65 8.59 37.16 0.32 -1.33 16 25 C -0.08 -1.20 3.81 -26.64 -0.10 -1.31 16 26 H 0.07 1.35 6.29 -51.93 -0.33 1.02 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.36 7.71 -51.93 -0.40 0.96 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.25 6.20 -51.93 -0.32 0.93 16 33 H 0.03 0.67 6.85 -51.93 -0.36 0.31 16 34 H 0.04 0.73 3.74 -51.93 -0.19 0.53 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.32 5.37 -51.93 -0.28 1.04 16 38 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.04 8.09 -51.92 -0.42 0.62 16 44 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -28.42 339.97 -7.07 -35.49 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.32 Total: 5.66 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.74 Total: -6.04 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.37 Total: -35.49 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.17 Total: -18.77 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.67 Total: 14.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.42 -7.07 -35.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.208 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds