Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 N 1.46503 * 109.47287 * 119.99515 * 2 1 3 5 5 C 1.46507 * 120.00001 * 120.83985 * 4 2 1 6 6 C 1.50695 * 109.47409 * 264.05331 * 5 4 2 7 7 H 1.08001 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99868 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00385 * 359.72244 * 8 6 5 10 10 Si 1.86798 * 119.99841 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47238 * 179.72568 * 10 8 6 12 12 H 1.48497 * 109.47569 * 299.72586 * 10 8 6 13 13 H 1.48504 * 109.47159 * 59.72559 * 10 8 6 14 14 C 1.34772 * 120.00176 * 300.85070 * 4 2 1 15 15 O 1.21282 * 120.00277 * 3.76566 * 14 4 2 16 16 C 1.50704 * 120.00175 * 183.77235 * 14 4 2 17 17 H 1.09004 * 109.40923 * 26.84525 * 16 14 4 18 18 C 1.52957 * 109.41230 * 266.98543 * 16 14 4 19 19 C 1.53235 * 109.39674 * 176.22410 * 18 16 14 20 20 C 1.51266 * 108.48658 * 54.73851 * 19 18 16 21 21 O 1.20762 * 120.85469 * 128.58535 * 20 19 18 22 22 C 1.51271 * 118.29788 * 308.60777 * 20 19 18 23 23 H 1.09007 * 109.78502 * 291.53941 * 22 20 19 24 24 C 1.53001 * 109.62652 * 171.06018 * 22 20 19 25 25 C 1.52962 * 109.41541 * 146.70185 * 16 14 4 26 26 H 1.08996 * 109.47283 * 305.22610 * 1 2 3 27 27 H 1.08999 * 109.47003 * 65.23028 * 1 2 3 28 28 H 1.09008 * 109.46980 * 185.22798 * 1 2 3 29 29 H 1.08992 * 109.47439 * 239.99536 * 2 1 3 30 30 H 1.09003 * 109.47245 * 180.29857 * 3 2 1 31 31 H 1.09000 * 109.46763 * 300.29626 * 3 2 1 32 32 H 1.09000 * 109.46998 * 60.29523 * 3 2 1 33 33 H 1.09002 * 109.47025 * 144.04794 * 5 4 2 34 34 H 1.09002 * 109.46661 * 24.05190 * 5 4 2 35 35 H 0.97000 * 119.99462 * 0.28056 * 9 8 6 36 36 H 1.09000 * 109.48369 * 296.27405 * 18 16 14 37 37 H 1.09000 * 109.48283 * 56.31523 * 18 16 14 38 38 H 1.08999 * 109.68696 * 295.01632 * 19 18 16 39 39 H 1.09006 * 109.77531 * 174.50400 * 19 18 16 40 40 H 1.08999 * 109.46946 * 300.95532 * 24 22 20 41 41 H 1.08995 * 109.46872 * 60.95979 * 24 22 20 42 42 H 1.09003 * 109.46882 * 180.95716 * 24 22 20 43 43 H 1.08994 * 109.48262 * 303.68594 * 25 16 14 44 44 H 1.09000 * 109.47893 * 63.72296 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8758 -1.8709 1.0620 6 6 2.0328 -3.1168 1.1506 7 1 0.9652 -3.0375 1.2932 8 6 2.6247 -4.3581 1.0508 9 7 3.9241 -4.4546 0.8728 10 14 1.5799 -5.9026 1.1615 11 1 2.4482 -7.0988 1.0192 12 1 0.8936 -5.9428 2.4777 13 1 0.5672 -5.8940 0.0753 14 6 1.6787 -0.2401 2.4202 15 8 0.9141 0.6947 2.5318 16 6 2.2491 -0.8979 3.6503 17 1 3.2123 -1.3467 3.4075 18 6 1.2896 -1.9854 4.1365 19 6 1.9125 -2.7171 5.3301 20 6 2.2776 -1.6939 6.3826 21 8 1.9179 -1.8278 7.5276 22 6 3.1044 -0.4983 5.9641 23 1 4.1124 -0.8202 5.7023 24 6 3.1691 0.5095 7.1135 25 6 2.4392 0.1519 4.7465 26 1 -0.3633 0.5927 0.8394 27 1 -0.3633 0.4306 -0.9331 28 1 -0.3633 -1.0235 0.0936 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0054 31 1 1.6723 1.9578 -0.8873 32 1 1.6810 1.9548 0.8926 33 1 3.6159 -1.8752 1.8621 34 1 3.3833 -1.8434 0.0977 35 1 4.4667 -3.6526 0.8157 36 1 0.3471 -1.5296 4.4397 37 1 1.1072 -2.6961 3.3305 38 1 2.8089 -3.2475 5.0086 39 1 1.1954 -3.4268 5.7427 40 1 2.1596 0.8245 7.3778 41 1 3.6427 0.0445 7.9781 42 1 3.7511 1.3774 6.8034 43 1 3.0720 0.9569 4.3731 44 1 1.4688 0.5560 5.0349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142685211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -103.262939 kcal Electronic energy + Delta-G solvation = -23909.947483 eV Core-core repulsion = 20633.228368 eV Total energy + Delta-G solvation = -3276.719116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31337 -39.19708 -36.24092 -35.32942 -33.57536 -32.68301 -31.47118 -29.18299 -26.75532 -26.52323 -26.02642 -23.27558 -22.79819 -22.14279 -20.79497 -18.86416 -18.18167 -17.10017 -16.07911 -15.83004 -15.59448 -15.36177 -14.53551 -14.39573 -13.96358 -13.84353 -13.72944 -13.22110 -13.01559 -12.66385 -12.60715 -12.52745 -12.25915 -12.01580 -11.87653 -11.66334 -11.57952 -11.47270 -11.20141 -10.95633 -10.90531 -10.82511 -10.82117 -10.57344 -10.42428 -10.22843 -10.13455 -9.30306 -9.08643 -8.79528 -8.55470 -7.73422 -6.57160 -4.33453 2.13627 3.28183 3.31734 3.34610 3.51170 3.76404 4.21447 4.35933 4.83036 4.90849 4.97103 5.13960 5.17616 5.34606 5.40271 5.47352 5.54653 5.60877 5.64216 5.70571 5.75286 5.85224 5.88964 5.99330 6.03656 6.04915 6.10453 6.14875 6.24118 6.28323 6.32823 6.36187 6.46750 6.57126 6.64403 6.71922 6.76521 6.86120 7.42639 7.67010 7.79342 8.08095 8.36303 8.58924 8.93423 9.36562 10.78059 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.008027 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.012784 B = 3487.556147 C = 5147.455943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.588 5.588 5 C 0.226 3.774 6 C -0.612 4.612 7 H 0.057 0.943 8 C 0.027 3.973 9 N -0.903 5.903 10 Si 1.061 2.939 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.287 1.287 14 C 0.528 3.472 15 O -0.567 6.567 16 C -0.106 4.106 17 H 0.099 0.901 18 C -0.105 4.105 19 C -0.164 4.164 20 C 0.367 3.633 21 O -0.465 6.465 22 C -0.142 4.142 23 H 0.104 0.896 24 C -0.137 4.137 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.025 0.975 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 7.046 3.825 8.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.318 5.318 5 C 0.106 3.894 6 C -0.650 4.650 7 H 0.075 0.925 8 C -0.179 4.179 9 N -0.538 5.538 10 Si 0.889 3.111 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.214 1.214 14 C 0.316 3.684 15 O -0.448 6.448 16 C -0.127 4.127 17 H 0.117 0.883 18 C -0.142 4.142 19 C -0.202 4.202 20 C 0.243 3.757 21 O -0.339 6.339 22 C -0.161 4.161 23 H 0.122 0.878 24 C -0.194 4.194 25 C -0.127 4.127 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.213 5.789 4.409 7.377 hybrid contribution 0.093 1.451 -0.299 1.484 sum -1.120 7.239 4.110 8.400 Atomic orbital electron populations 1.22165 0.95482 1.02563 1.01958 1.20843 0.94449 0.92239 0.88105 1.22181 1.00519 0.96932 1.02657 1.48170 1.49759 1.29477 1.04400 1.19557 0.90152 0.82671 0.97039 1.22264 0.95615 0.91613 1.55507 0.92464 1.25725 0.97332 1.01374 0.93442 1.70839 1.05184 1.32921 1.44882 0.83634 0.74955 0.75668 0.76885 1.20642 1.21058 1.21351 1.20241 0.80798 0.82765 0.84606 1.90532 1.36795 1.30496 1.86994 1.21290 1.01693 0.96529 0.93145 0.88264 1.21536 0.97004 0.97763 0.97925 1.22282 1.03703 0.98051 0.96153 1.25025 0.75643 0.86535 0.88450 1.90343 1.46029 1.75347 1.22172 1.21901 1.00896 0.95834 0.97454 0.87807 1.21630 1.02444 0.98133 0.97190 1.21434 1.01620 0.97227 0.92449 0.90607 0.93137 0.92480 0.90194 0.93260 0.92536 0.90904 0.95449 0.95745 0.92109 0.92065 0.87213 0.87787 0.89388 0.92335 0.92195 0.92108 0.91037 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.01 37.16 0.33 -2.48 16 2 C 0.15 2.61 3.28 -67.93 -0.22 2.39 16 3 C -0.16 -2.57 9.14 37.16 0.34 -2.23 16 4 N -0.59 -11.49 2.42 -167.47 -0.41 -11.89 16 5 C 0.23 4.89 4.26 -5.19 -0.02 4.87 16 6 C -0.61 -14.58 7.53 -34.44 -0.26 -14.84 16 7 H 0.06 1.41 7.25 -52.49 -0.38 1.03 16 8 C 0.03 0.67 5.46 -17.82 -0.10 0.57 16 9 N -0.90 -24.03 13.65 55.43 0.76 -23.28 16 10 Si 1.06 22.76 29.90 -169.99 -5.08 17.68 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.29 -6.04 7.11 56.52 0.40 -5.63 16 14 C 0.53 10.09 6.04 -10.99 -0.07 10.02 16 15 O -0.57 -11.60 12.60 5.56 0.07 -11.53 16 16 C -0.11 -1.77 1.84 -91.81 -0.17 -1.94 16 17 H 0.10 1.70 5.86 -51.93 -0.30 1.40 16 18 C -0.10 -1.76 5.18 -26.63 -0.14 -1.90 16 19 C -0.16 -2.49 6.17 -27.48 -0.17 -2.66 16 20 C 0.37 5.57 6.58 -28.48 -0.19 5.38 16 21 O -0.46 -8.13 16.88 6.00 0.10 -8.03 16 22 C -0.14 -1.87 3.01 -91.37 -0.27 -2.14 16 23 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 24 C -0.14 -1.64 8.58 37.16 0.32 -1.32 16 25 C -0.09 -1.29 4.08 -26.63 -0.11 -1.40 16 26 H 0.08 1.40 6.16 -51.93 -0.32 1.08 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 29 H 0.08 1.41 7.72 -51.93 -0.40 1.01 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.25 6.35 -51.93 -0.33 0.92 16 33 H 0.03 0.60 5.81 -51.93 -0.30 0.30 16 34 H 0.02 0.56 7.67 -51.93 -0.40 0.16 16 35 H 0.27 7.03 7.22 -40.82 -0.29 6.73 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.11 2.12 5.56 -51.93 -0.29 1.83 16 38 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.17 7.97 -51.93 -0.41 0.75 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -27.37 342.15 -7.43 -34.80 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.30 Total: 4.77 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.72 Total: -7.67 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.35 Total: -35.17 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.08 Total: 17.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.37 -7.43 -34.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142685211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.464 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds