Wall clock time and date at job start Tue Mar 31 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33091 * 1 3 3 C 1.50702 * 119.99425 * 2 1 4 4 C 1.46945 * 120.00307 * 179.97438 * 2 1 3 5 5 O 1.21540 * 119.99910 * 0.02562 * 4 2 1 6 6 O 1.34795 * 119.99905 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99815 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46715 * 180.02562 * 7 6 4 9 9 N 1.46893 * 109.47165 * 65.00497 * 8 7 6 10 10 C 1.46905 * 111.00246 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47500 * 204.99866 * 10 9 8 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46989 * 60.00030 * 12 11 10 14 14 C 1.50694 * 109.47168 * 59.99989 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.53000 * 109.47124 * 299.99675 * 13 12 11 23 23 C 1.53000 * 109.46922 * 60.00284 * 22 13 12 24 24 H 1.08000 * 119.99607 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47192 * 269.99980 * 3 2 1 27 27 H 1.09004 * 109.46993 * 30.00317 * 3 2 1 28 28 H 1.09004 * 109.46720 * 150.00137 * 3 2 1 29 29 H 1.08997 * 109.47093 * 60.00961 * 7 6 4 30 30 H 1.08998 * 109.47498 * 300.00415 * 7 6 4 31 31 H 1.08994 * 109.47345 * 305.00172 * 8 7 6 32 32 H 1.09002 * 109.46966 * 185.00153 * 8 7 6 33 33 H 1.00900 * 111.00244 * 303.94730 * 9 8 7 34 34 H 1.08998 * 109.46545 * 324.99920 * 10 9 8 35 35 H 1.08995 * 109.47132 * 59.99890 * 11 10 9 36 36 H 1.09007 * 109.46935 * 300.00130 * 11 10 9 37 37 H 1.08998 * 109.46768 * 300.00007 * 12 11 10 38 38 H 1.09000 * 109.47156 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46926 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.47131 * 180.02562 * 22 13 12 42 42 H 1.08998 * 109.47544 * 300.00581 * 22 13 12 43 43 H 1.09000 * 109.47156 * 179.97438 * 23 22 13 44 44 H 1.09007 * 109.47356 * 59.99868 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0843 1.3052 0.0000 4 6 2.0657 -1.2725 0.0006 5 8 1.4580 -2.3251 0.0006 6 8 3.4137 -1.2725 0.0000 7 6 4.0729 -2.5662 0.0012 8 6 5.5897 -2.3655 0.0011 9 7 5.9984 -1.7201 1.2557 10 6 7.4522 -1.5116 1.2914 11 6 7.9220 -1.4425 2.7457 12 6 9.4362 -1.2260 2.7828 13 6 9.7815 0.0844 2.0725 14 6 9.0931 1.2298 2.7689 15 1 8.4711 1.0420 3.6316 16 6 9.2573 2.5177 2.3048 17 7 8.6522 3.5167 2.9093 18 14 10.3325 2.8426 0.8123 19 1 9.5055 2.7693 -0.4190 20 1 10.9372 4.1944 0.9226 21 1 11.4097 1.8224 0.7466 22 6 9.3117 0.0153 0.6181 23 6 7.7975 -0.2012 0.5810 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2659 1.6199 -1.0277 27 1 1.4951 2.0648 0.5139 28 1 3.0367 1.1749 0.5138 29 1 3.7798 -3.1241 -0.8881 30 1 3.7804 -3.1223 0.8919 31 1 5.8727 -1.7343 -0.8412 32 1 6.0842 -3.3329 -0.0876 33 1 5.5048 -0.8508 1.3927 34 1 7.9504 -2.3398 0.7875 35 1 7.6764 -2.3762 3.2516 36 1 7.4237 -0.6143 3.2496 37 1 9.9341 -2.0545 2.2790 38 1 9.7710 -1.1773 3.8189 39 1 10.8602 0.2389 2.0993 40 1 8.7680 4.4228 2.5830 41 1 9.5581 0.9487 0.1119 42 1 9.8096 -0.8132 0.1143 43 1 7.4627 -0.2499 -0.4552 44 1 7.2995 0.6273 1.0848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:42 Heat of formation + Delta-G solvation = -83.695417 kcal Electronic energy + Delta-G solvation = -22629.942287 eV Core-core repulsion = 19354.071682 eV Total energy + Delta-G solvation = -3275.870604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48881 -38.49573 -36.91788 -34.93121 -34.80505 -32.18791 -30.32862 -29.93135 -27.51862 -27.24184 -24.67504 -24.05672 -22.01627 -21.63128 -20.75838 -19.61990 -18.71735 -17.42354 -16.62012 -16.54772 -16.17329 -15.48766 -14.92049 -14.30437 -14.19781 -13.96806 -13.76779 -13.54391 -13.42158 -12.90792 -12.65544 -12.50437 -12.39656 -12.15353 -12.08115 -11.85363 -11.77283 -11.38932 -11.12355 -10.86833 -10.68095 -10.58743 -10.43478 -10.17451 -9.97363 -9.74109 -9.69924 -9.30559 -9.11628 -8.79896 -8.49166 -7.97395 -6.03139 -3.99578 0.94009 2.59802 2.79273 3.27477 3.39090 3.40735 4.35662 4.44112 4.50519 4.67439 4.90792 5.16447 5.19734 5.24568 5.29196 5.38779 5.47562 5.53314 5.59776 5.69598 5.74695 5.79296 5.89794 5.99546 6.14185 6.20206 6.22025 6.30416 6.33353 6.35776 6.44171 6.54801 6.68679 6.77690 7.04326 7.11812 7.14276 7.29484 7.46719 7.51987 7.63908 7.74006 7.85765 8.58757 9.02132 9.60710 11.09969 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.004330 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.576779 B = 6465.106517 C = 7382.867508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.153 4.153 3 C -0.118 4.118 4 C 0.502 3.498 5 O -0.516 6.516 6 O -0.347 6.347 7 C 0.070 3.930 8 C 0.060 3.940 9 N -0.687 5.687 10 C 0.096 3.904 11 C -0.095 4.095 12 C -0.096 4.096 13 C 0.006 3.994 14 C -0.499 4.499 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.903 5.903 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.268 1.268 22 C -0.113 4.113 23 C -0.132 4.132 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.349 0.651 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 -8.491 -7.700 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.154 4.154 3 C -0.174 4.174 4 C 0.348 3.652 5 O -0.406 6.406 6 O -0.263 6.263 7 C -0.004 4.004 8 C -0.070 4.070 9 N -0.318 5.318 10 C -0.013 4.013 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.012 4.012 14 C -0.537 4.537 15 H 0.094 0.906 16 C -0.132 4.132 17 N -0.542 5.542 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.193 1.193 22 C -0.151 4.151 23 C -0.171 4.171 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.168 0.832 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.703 -9.238 -7.345 16.621 hybrid contribution 0.640 0.960 -1.616 1.985 sum -11.063 -8.278 -8.961 16.469 Atomic orbital electron populations 1.24727 0.94144 1.03793 0.90987 1.21066 0.94717 0.92969 1.06684 1.20833 1.01114 0.92476 1.03026 1.21423 0.81282 0.89972 0.72560 1.90837 1.69553 1.33817 1.46423 1.86584 1.20377 1.35798 1.83521 1.23244 0.92246 0.82204 1.02727 1.22032 0.91493 1.00565 0.92898 1.60737 1.06944 1.31142 1.32933 1.21529 0.86023 0.96236 0.97499 1.21371 0.96264 1.00977 0.94674 1.21359 0.94955 0.97157 0.99954 1.19212 0.96381 0.94401 0.91254 1.21028 1.29139 0.89503 1.14055 0.90613 1.24997 0.95300 0.96322 0.96605 1.69906 1.43683 0.99533 1.41116 0.86902 0.81486 0.76499 0.83623 1.20881 1.22786 1.19309 1.21773 0.95117 0.98410 0.99758 1.22049 0.98010 0.98986 0.98047 0.86623 0.85799 0.90861 0.90996 0.90067 0.91056 0.90179 0.94125 0.89155 0.83214 0.91937 0.93540 0.90595 0.94708 0.92731 0.95764 0.92892 0.93910 0.94810 0.94726 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 13.92 28.94 0.40 -0.41 16 2 C -0.15 -1.62 6.00 -102.89 -0.62 -2.23 16 3 C -0.12 -1.13 9.85 36.01 0.35 -0.77 16 4 C 0.50 6.68 7.88 34.26 0.27 6.95 16 5 O -0.52 -7.88 16.01 -19.30 -0.31 -8.19 16 6 O -0.35 -4.64 9.01 -40.75 -0.37 -5.01 16 7 C 0.07 0.85 5.81 37.16 0.22 1.06 16 8 C 0.06 0.75 5.91 -3.82 -0.02 0.72 16 9 N -0.69 -10.38 6.25 -106.73 -0.67 -11.05 16 10 C 0.10 1.62 2.47 -67.71 -0.17 1.46 16 11 C -0.09 -1.74 5.30 -26.73 -0.14 -1.89 16 12 C -0.10 -1.87 5.41 -26.73 -0.14 -2.01 16 13 C 0.01 0.14 2.18 -91.77 -0.20 -0.06 16 14 C -0.50 -13.34 7.19 -34.44 -0.25 -13.59 16 15 H 0.08 2.20 6.95 -52.49 -0.37 1.83 16 16 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 18 Si 0.88 21.83 24.37 -169.99 -4.14 17.68 16 19 H -0.28 -6.81 6.87 56.52 0.39 -6.43 16 20 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 22 C -0.11 -2.37 4.94 -26.73 -0.13 -2.50 16 23 C -0.13 -2.54 4.95 -26.73 -0.13 -2.67 16 24 H 0.12 0.98 7.49 -52.49 -0.39 0.59 16 25 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 28 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.52 7.44 -51.93 -0.39 0.14 16 32 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.35 5.61 8.04 -39.29 -0.32 5.29 16 34 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.59 6.62 -51.93 -0.34 1.24 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.61 7.46 -51.93 -0.39 0.22 16 44 H 0.08 1.86 7.21 -51.93 -0.37 1.48 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -30.29 343.98 -7.50 -37.79 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.31 Total: 3.97 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.66 Total: -14.12 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.11 Total: -37.31 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.68 Total: -13.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.29 -7.50 -37.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.901 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds