Wall clock time and date at job start Tue Mar 31 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33091 * 1 3 3 C 1.50702 * 119.99425 * 2 1 4 4 C 1.46945 * 120.00307 * 179.97438 * 2 1 3 5 5 O 1.21540 * 119.99910 * 0.02562 * 4 2 1 6 6 O 1.34795 * 119.99905 * 179.97438 * 4 2 1 7 7 C 1.45202 * 116.99815 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46715 * 180.02562 * 7 6 4 9 9 N 1.46893 * 109.47165 * 65.00497 * 8 7 6 10 10 C 1.46905 * 111.00246 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47500 * 204.99866 * 10 9 8 12 12 C 1.53000 * 109.47200 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46989 * 60.00030 * 12 11 10 14 14 C 1.50694 * 109.47168 * 59.99989 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.53000 * 109.47124 * 299.99675 * 13 12 11 23 23 C 1.53000 * 109.46922 * 60.00284 * 22 13 12 24 24 H 1.08000 * 119.99607 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47192 * 269.99980 * 3 2 1 27 27 H 1.09004 * 109.46993 * 30.00317 * 3 2 1 28 28 H 1.09004 * 109.46720 * 150.00137 * 3 2 1 29 29 H 1.08997 * 109.47093 * 60.00961 * 7 6 4 30 30 H 1.08998 * 109.47498 * 300.00415 * 7 6 4 31 31 H 1.08994 * 109.47345 * 305.00172 * 8 7 6 32 32 H 1.09002 * 109.46966 * 185.00153 * 8 7 6 33 33 H 1.00900 * 111.00244 * 303.94730 * 9 8 7 34 34 H 1.08998 * 109.46545 * 324.99920 * 10 9 8 35 35 H 1.08995 * 109.47132 * 59.99890 * 11 10 9 36 36 H 1.09007 * 109.46935 * 300.00130 * 11 10 9 37 37 H 1.08998 * 109.46768 * 300.00007 * 12 11 10 38 38 H 1.09000 * 109.47156 * 180.02562 * 12 11 10 39 39 H 1.09002 * 109.46926 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.47131 * 180.02562 * 22 13 12 42 42 H 1.08998 * 109.47544 * 300.00581 * 22 13 12 43 43 H 1.09000 * 109.47156 * 179.97438 * 23 22 13 44 44 H 1.09007 * 109.47356 * 59.99868 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.0843 1.3052 0.0000 4 6 2.0657 -1.2725 0.0006 5 8 1.4580 -2.3251 0.0006 6 8 3.4137 -1.2725 0.0000 7 6 4.0729 -2.5662 0.0012 8 6 5.5897 -2.3655 0.0011 9 7 5.9984 -1.7201 1.2557 10 6 7.4522 -1.5116 1.2914 11 6 7.9220 -1.4425 2.7457 12 6 9.4362 -1.2260 2.7828 13 6 9.7815 0.0844 2.0725 14 6 9.0931 1.2298 2.7689 15 1 8.4711 1.0420 3.6316 16 6 9.2573 2.5177 2.3048 17 7 8.6522 3.5167 2.9093 18 14 10.3325 2.8426 0.8123 19 1 9.5055 2.7693 -0.4190 20 1 10.9372 4.1944 0.9226 21 1 11.4097 1.8224 0.7466 22 6 9.3117 0.0153 0.6181 23 6 7.7975 -0.2012 0.5810 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2659 1.6199 -1.0277 27 1 1.4951 2.0648 0.5139 28 1 3.0367 1.1749 0.5138 29 1 3.7798 -3.1241 -0.8881 30 1 3.7804 -3.1223 0.8919 31 1 5.8727 -1.7343 -0.8412 32 1 6.0842 -3.3329 -0.0876 33 1 5.5048 -0.8508 1.3927 34 1 7.9504 -2.3398 0.7875 35 1 7.6764 -2.3762 3.2516 36 1 7.4237 -0.6143 3.2496 37 1 9.9341 -2.0545 2.2790 38 1 9.7710 -1.1773 3.8189 39 1 10.8602 0.2389 2.0993 40 1 8.7680 4.4228 2.5830 41 1 9.5581 0.9487 0.1119 42 1 9.8096 -0.8132 0.1143 43 1 7.4627 -0.2499 -0.4552 44 1 7.2995 0.6273 1.0848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:42 Heat of formation + Delta-G solvation = -102.789838 kcal Electronic energy + Delta-G solvation = -22630.770283 eV Core-core repulsion = 19354.071682 eV Total energy + Delta-G solvation = -3276.698601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49139 -39.99057 -37.99323 -36.26486 -35.64773 -34.15898 -31.75478 -31.48193 -28.78501 -28.12756 -26.34812 -25.22102 -23.48713 -22.80841 -22.21245 -20.59691 -20.43154 -18.40937 -18.21833 -17.61693 -17.41137 -17.02467 -16.15168 -16.04342 -15.48957 -15.26730 -15.05189 -14.57352 -14.51257 -14.33611 -13.99828 -13.88679 -13.67141 -13.44034 -13.27777 -13.07793 -13.03543 -12.66972 -12.56745 -12.35203 -12.24283 -11.79760 -11.75245 -11.67539 -11.58192 -11.55635 -10.97083 -10.81196 -10.67886 -10.55575 -10.43435 -9.24827 -8.20874 -6.19860 0.12361 1.30743 1.36644 1.45984 1.70036 1.88675 2.37272 3.15139 3.19000 3.62739 3.90375 3.95730 4.00083 4.08740 4.19245 4.28872 4.35352 4.50969 4.55868 4.65032 4.66369 4.71921 4.76805 4.80294 4.81694 4.85675 4.88716 4.97200 5.07691 5.08059 5.23527 5.25494 5.34856 5.47338 5.50198 5.51235 5.52374 5.62348 5.77933 5.87338 6.19616 6.40919 6.46309 6.65174 6.85977 7.43235 8.95914 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.004330 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.576779 B = 6465.106517 C = 7382.867508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.185 4.185 3 C -0.112 4.112 4 C 0.497 3.503 5 O -0.545 6.545 6 O -0.357 6.357 7 C 0.070 3.930 8 C 0.063 3.937 9 N -0.690 5.690 10 C 0.106 3.894 11 C -0.090 4.090 12 C -0.093 4.093 13 C 0.001 3.999 14 C -0.489 4.489 15 H 0.036 0.964 16 C 0.012 3.988 17 N -0.953 5.953 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.306 1.306 21 H -0.249 1.249 22 C -0.114 4.114 23 C -0.126 4.126 24 H 0.113 0.887 25 H 0.159 0.841 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.114 0.886 33 H 0.340 0.660 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.026 0.974 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 -10.188 -9.735 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.186 4.186 3 C -0.169 4.169 4 C 0.345 3.655 5 O -0.437 6.437 6 O -0.273 6.273 7 C -0.004 4.004 8 C -0.066 4.066 9 N -0.319 5.319 10 C -0.003 4.003 11 C -0.129 4.129 12 C -0.131 4.131 13 C -0.018 4.018 14 C -0.527 4.527 15 H 0.055 0.945 16 C -0.184 4.184 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.235 1.235 21 H -0.173 1.173 22 C -0.152 4.152 23 C -0.165 4.165 24 H 0.131 0.869 25 H 0.177 0.823 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.685 -10.963 -9.386 18.570 hybrid contribution 0.529 1.450 -0.894 1.784 sum -11.156 -9.513 -10.281 17.907 Atomic orbital electron populations 1.25074 0.93227 1.05302 0.86770 1.21144 0.95482 0.92024 1.09968 1.20781 1.00160 0.92628 1.03299 1.21992 0.81138 0.90720 0.71660 1.90811 1.69835 1.34888 1.48187 1.86596 1.20790 1.36475 1.83483 1.23287 0.92078 0.81956 1.03101 1.22135 0.91703 1.01298 0.91418 1.60722 1.05852 1.30634 1.34730 1.21403 0.87210 0.95668 0.96026 1.21295 0.95374 1.00267 0.95922 1.21325 0.95841 0.96451 0.99511 1.19240 0.95404 0.94384 0.92730 1.21269 1.27686 0.91063 1.12671 0.94546 1.25753 0.96882 0.96221 0.99563 1.70059 1.46130 0.99983 1.43353 0.85948 0.80278 0.76285 0.80433 1.19933 1.23486 1.17304 1.21745 0.96390 0.98992 0.98062 1.21970 0.96642 0.98937 0.98991 0.86920 0.82337 0.90355 0.89167 0.92511 0.89578 0.90898 0.94058 0.86814 0.84234 0.89295 0.91666 0.94445 0.91270 0.93589 0.96300 0.93079 0.95545 0.91283 0.92824 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 13.92 66.67 0.93 -0.03 16 2 C -0.19 -3.75 6.00 -18.74 -0.11 -3.86 16 3 C -0.11 -2.08 9.85 71.24 0.70 -1.38 16 4 C 0.50 13.17 7.88 70.10 0.55 13.73 16 5 O -0.54 -16.57 16.01 19.71 0.32 -16.25 16 6 O -0.36 -9.54 9.01 -57.06 -0.51 -10.06 16 7 C 0.07 1.61 5.81 71.98 0.42 2.03 16 8 C 0.06 1.44 5.91 86.31 0.51 1.95 16 9 N -0.69 -19.94 6.25 -491.58 -3.07 -23.01 16 10 C 0.11 3.35 2.47 44.91 0.11 3.46 16 11 C -0.09 -3.23 5.30 30.59 0.16 -3.07 16 12 C -0.09 -3.45 5.41 30.59 0.17 -3.29 16 13 C 0.00 0.05 2.18 -11.54 -0.03 0.03 16 14 C -0.49 -26.86 7.19 25.60 0.18 -26.68 16 15 H 0.04 2.24 6.95 -2.91 -0.02 2.22 16 16 C 0.01 0.67 5.45 84.66 0.46 1.13 16 17 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 18 Si 0.94 45.19 24.37 68.60 1.67 46.86 16 19 H -0.27 -12.59 6.87 99.48 0.68 -11.91 16 20 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 21 H -0.25 -11.07 6.53 99.48 0.65 -10.42 16 22 C -0.11 -4.50 4.94 30.59 0.15 -4.35 16 23 C -0.13 -4.67 4.95 30.60 0.15 -4.52 16 24 H 0.11 1.72 7.49 -2.91 -0.02 1.69 16 25 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.29 8.07 -2.38 -0.02 1.27 16 28 H 0.06 1.32 7.68 -2.39 -0.02 1.30 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 0.95 7.44 -2.39 -0.02 0.94 16 32 H 0.11 2.08 8.05 -2.39 -0.02 2.06 16 33 H 0.34 11.03 8.04 -89.69 -0.72 10.31 16 34 H 0.09 2.41 7.80 -2.39 -0.02 2.39 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.61 6.62 -2.38 -0.02 1.60 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.03 1.13 3.27 -2.39 -0.01 1.12 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 1.76 7.46 -2.39 -0.02 1.75 16 44 H 0.04 1.95 7.21 -2.38 -0.02 1.93 16 Total: -1.00 -68.14 343.98 3.24 -64.91 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.18 Total: 21.53 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.36 Total: -24.86 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.77 Total: -82.13 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.20 Total: -26.30 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.67 Total: 46.86 kcal Total: -68.14 3.24 -64.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.883 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds