Wall clock time and date at job start Tue Mar 31 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47364 * 2 1 4 4 C 1.52998 * 109.47364 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47523 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00051 * 273.86881 * 5 4 3 7 7 H 1.08000 * 119.99795 * 306.79263 * 6 5 4 8 8 C 1.38951 * 120.00160 * 126.79716 * 6 5 4 9 9 N 1.31407 * 119.99898 * 341.33939 * 8 6 5 10 10 Si 1.86804 * 119.99945 * 161.33458 * 8 6 5 11 11 H 1.48503 * 109.46965 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46898 * 120.00185 * 10 8 6 13 13 H 1.48494 * 109.47019 * 240.00237 * 10 8 6 14 14 C 1.34778 * 119.99745 * 93.86130 * 5 4 3 15 15 O 1.21290 * 119.99877 * 0.02562 * 14 5 4 16 16 C 1.50702 * 119.99736 * 179.72646 * 14 5 4 17 17 H 1.08997 * 115.55145 * 51.41080 * 16 14 5 18 18 C 1.53058 * 117.50671 * 197.11452 * 16 14 5 19 19 C 1.52717 * 117.50830 * 265.69775 * 16 14 5 20 20 C 1.53255 * 117.82966 * 144.66914 * 19 16 14 21 21 C 1.53329 * 108.48706 * 265.32657 * 20 19 16 22 22 O 1.42869 * 109.31798 * 306.01739 * 21 20 19 23 23 C 1.42880 * 114.51842 * 64.36929 * 22 21 20 24 24 C 1.53245 * 117.83499 * 0.40683 * 19 16 14 25 25 H 1.08997 * 109.46981 * 299.99680 * 1 2 3 26 26 H 1.09002 * 109.46859 * 59.99918 * 1 2 3 27 27 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47160 * 239.99959 * 2 1 3 29 29 H 1.09007 * 109.47288 * 120.00222 * 2 1 3 30 30 H 1.08997 * 109.46810 * 60.00216 * 3 2 1 31 31 H 1.08994 * 109.47000 * 300.00112 * 3 2 1 32 32 H 1.09005 * 109.47101 * 59.99464 * 4 3 2 33 33 H 1.09005 * 109.47211 * 300.00758 * 4 3 2 34 34 H 0.97002 * 119.99850 * 180.02562 * 9 8 6 35 35 H 1.08996 * 117.50749 * 214.93801 * 18 16 14 36 36 H 1.09004 * 117.50499 * 0.02562 * 18 16 14 37 37 H 1.08999 * 109.63129 * 25.02670 * 20 19 16 38 38 H 1.09006 * 109.63317 * 145.62571 * 20 19 16 39 39 H 1.08997 * 109.49837 * 186.06494 * 21 20 19 40 40 H 1.08998 * 109.49552 * 65.96900 * 21 20 19 41 41 H 1.09000 * 109.49576 * 175.67809 * 23 22 21 42 42 H 1.08998 * 109.49548 * 55.58017 * 23 22 21 43 43 H 1.09000 * 109.63530 * 214.37361 * 24 19 16 44 44 H 1.09011 * 109.63400 * 334.97098 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.2110 3.4963 -1.1861 7 1 4.7959 3.0609 -1.9828 8 6 3.6131 4.7382 -1.3619 9 7 2.6254 5.1087 -0.5785 10 14 4.2136 5.8811 -2.7120 11 1 5.3277 5.2332 -3.4498 12 1 3.0989 6.1668 -3.6508 13 1 4.6910 7.1514 -2.1092 14 6 4.3577 3.4331 1.1630 15 8 4.2231 2.8378 2.2112 16 6 4.8660 4.8518 1.1620 17 1 4.2647 5.5662 0.5998 18 6 5.5597 5.3551 2.4301 19 6 6.3790 5.0590 1.1747 20 6 6.9449 6.2484 0.3913 21 6 7.3583 5.7603 -1.0022 22 8 8.2467 4.6493 -0.8695 23 6 7.6629 3.4917 -0.2691 24 6 7.2718 3.8135 1.1781 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8909 33 1 3.9338 0.9284 0.8891 34 1 2.2077 5.9755 -0.7015 35 1 5.4152 6.4007 2.7018 36 1 5.6488 4.6598 3.2649 37 1 6.1820 7.0213 0.2973 38 1 7.8146 6.6495 0.9119 39 1 7.8615 6.5667 -1.5357 40 1 6.4723 5.4532 -1.5578 41 1 8.3841 2.6744 -0.2780 42 1 6.7748 3.1999 -0.8297 43 1 8.1692 4.0076 1.7655 44 1 6.7256 2.9724 1.6055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179312187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:10 Heat of formation + Delta-G solvation = -71.391434 kcal Electronic energy + Delta-G solvation = -24370.679163 eV Core-core repulsion = 21095.342100 eV Total energy + Delta-G solvation = -3275.337064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.73596 -37.99513 -35.93590 -34.88660 -34.01080 -31.70695 -30.74963 -29.48463 -28.35369 -24.92076 -24.15007 -23.22163 -22.46869 -21.47040 -20.34672 -19.34297 -18.44310 -16.74098 -15.71265 -15.60914 -15.20843 -15.04214 -14.71513 -14.48014 -14.32697 -13.97682 -13.53965 -13.22942 -12.75177 -12.56036 -12.41949 -12.26731 -11.93401 -11.83265 -11.52934 -11.46899 -11.31066 -10.96490 -10.75191 -10.64601 -10.52419 -10.46770 -10.36700 -10.28828 -10.13749 -9.74833 -9.63409 -9.12473 -8.97684 -8.55136 -8.26348 -7.34031 -6.46515 -4.26886 3.00303 3.13392 3.15247 3.85039 4.04884 4.34956 4.58830 4.73945 4.84849 5.25038 5.39656 5.47557 5.48919 5.53865 5.56656 5.66321 5.75146 5.78567 6.01607 6.05027 6.07445 6.15057 6.20016 6.22586 6.26885 6.34313 6.36531 6.37940 6.43392 6.44939 6.55179 6.56368 6.65041 6.71367 6.78003 6.84975 7.05502 7.19620 7.23117 7.37109 7.69871 7.94060 8.58382 8.88317 9.57530 10.00741 10.58281 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.007539 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.375130 B = 3713.368534 C = 4355.385681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.115 3.885 5 N -0.451 5.451 6 C -0.331 4.331 7 H 0.080 0.920 8 C 0.056 3.944 9 N -0.853 5.853 10 Si 0.886 3.114 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.547 3.453 15 O -0.610 6.610 16 C -0.128 4.128 17 H 0.141 0.859 18 C -0.166 4.166 19 C -0.113 4.113 20 C -0.111 4.111 21 C 0.060 3.940 22 O -0.388 6.388 23 C 0.058 3.942 24 C -0.111 4.111 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 -0.843 -0.949 4.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.158 4.158 4 C -0.009 4.009 5 N -0.170 5.170 6 C -0.459 4.459 7 H 0.098 0.902 8 C -0.151 4.151 9 N -0.489 5.489 10 Si 0.713 3.287 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.338 3.662 15 O -0.496 6.496 16 C -0.149 4.149 17 H 0.158 0.842 18 C -0.203 4.203 19 C -0.113 4.113 20 C -0.149 4.149 21 C -0.016 4.016 22 O -0.307 6.307 23 C -0.018 4.018 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.914 -1.013 -0.502 4.074 hybrid contribution -0.404 0.860 -0.642 1.147 sum 3.510 -0.153 -1.144 3.695 Atomic orbital electron populations 1.21736 0.96549 1.00472 1.01754 1.21500 0.95332 0.98086 1.01044 1.21793 0.96611 0.94670 1.02769 1.21366 0.93422 0.86047 1.00030 1.43221 1.57450 1.10802 1.05522 1.19172 1.31425 1.01407 0.93921 0.90195 1.25465 0.93556 0.99268 0.96784 1.70007 1.18982 1.21163 1.38747 0.86576 0.79352 0.81085 0.81723 1.18496 1.20841 1.19769 1.19353 0.77445 0.86373 0.83080 1.90494 1.59497 1.67120 1.32443 1.22689 0.93726 0.98175 1.00313 0.84178 1.22983 1.04109 1.00968 0.92266 1.21234 0.92538 0.96719 1.00854 1.21734 1.00484 0.96382 0.96285 1.22656 0.94264 0.88756 0.95973 1.87733 1.38674 1.22783 1.81539 1.22694 0.99106 0.87100 0.92913 1.21701 0.98631 0.96742 0.97786 0.93004 0.92932 0.93585 0.92630 0.92677 0.92379 0.91459 0.92632 0.92244 0.91982 0.89501 0.88649 0.91237 0.91321 0.89869 0.92200 0.89963 0.90701 0.91854 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.12 -2.44 5.52 -26.73 -0.15 -2.59 16 4 C 0.11 2.46 5.42 -4.04 -0.02 2.44 16 5 N -0.45 -10.78 2.42 -114.81 -0.28 -11.05 16 6 C -0.33 -7.91 7.60 -14.93 -0.11 -8.02 16 7 H 0.08 1.89 7.73 -52.49 -0.41 1.48 16 8 C 0.06 1.33 3.51 -17.47 -0.06 1.27 16 9 N -0.85 -21.62 11.40 55.50 0.63 -20.99 16 10 Si 0.89 18.55 26.50 -169.99 -4.50 14.05 16 11 H -0.26 -5.33 7.06 56.52 0.40 -4.94 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 14 C 0.55 13.62 5.26 -10.98 -0.06 13.56 16 15 O -0.61 -16.49 15.75 5.55 0.09 -16.40 16 16 C -0.13 -2.90 4.24 -91.89 -0.39 -3.29 16 17 H 0.14 3.40 4.93 -51.93 -0.26 3.14 16 18 C -0.17 -3.27 9.52 -26.80 -0.26 -3.53 16 19 C -0.11 -2.18 2.03 -154.50 -0.31 -2.49 16 20 C -0.11 -1.92 5.92 -26.43 -0.16 -2.08 16 21 C 0.06 1.07 6.84 37.33 0.26 1.32 16 22 O -0.39 -7.15 10.69 -35.23 -0.38 -7.53 16 23 C 0.06 1.05 6.85 37.33 0.26 1.31 16 24 C -0.11 -2.06 5.58 -26.44 -0.15 -2.20 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.06 1.29 7.31 -51.93 -0.38 0.91 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.10 1.94 7.78 -51.93 -0.40 1.54 16 37 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.17 4.41 -51.93 -0.23 0.95 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.50 6.70 -51.93 -0.35 1.15 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.55 6.71 -51.92 -0.35 1.20 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -27.28 339.90 -7.68 -34.96 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.42 Total: 10.04 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -0.94 Total: -8.20 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.36 Total: -32.04 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.29 Total: -23.93 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.50 Total: 14.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.28 -7.68 -34.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179312187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.429 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds