Wall clock time and date at job start Tue Mar 31 2020 05:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47007 * 2 1 4 4 C 1.52996 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47081 * 180.02562 * 4 3 2 6 6 C 1.37104 * 119.99694 * 264.53543 * 5 4 3 7 7 H 1.08004 * 119.99627 * 145.55919 * 6 5 4 8 8 C 1.38943 * 119.99960 * 325.56589 * 6 5 4 9 9 N 1.31412 * 120.00206 * 338.21569 * 8 6 5 10 10 Si 1.86802 * 120.00074 * 158.22493 * 8 6 5 11 11 H 1.48505 * 109.47156 * 59.99600 * 10 8 6 12 12 H 1.48497 * 109.47554 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47245 * 299.99759 * 10 8 6 14 14 C 1.34780 * 120.00543 * 84.53751 * 5 4 3 15 15 O 1.21288 * 119.99321 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00274 * 180.02562 * 14 5 4 17 17 H 1.08998 * 115.55320 * 34.29699 * 16 14 5 18 18 C 1.53053 * 117.50609 * 248.54276 * 16 14 5 19 19 C 1.52702 * 117.50562 * 180.02562 * 16 14 5 20 20 C 1.53319 * 117.87087 * 359.66879 * 19 16 14 21 21 C 1.53329 * 108.44556 * 163.78045 * 20 19 16 22 22 O 1.42884 * 109.33611 * 53.99798 * 21 20 19 23 23 C 1.42876 * 114.49868 * 295.58568 * 22 21 20 24 24 C 1.53255 * 117.86753 * 215.26369 * 19 16 14 25 25 H 1.08994 * 109.47212 * 299.99827 * 1 2 3 26 26 H 1.08999 * 109.47260 * 60.00142 * 1 2 3 27 27 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47212 * 240.00173 * 2 1 3 29 29 H 1.08999 * 109.47260 * 119.99858 * 2 1 3 30 30 H 1.09003 * 109.46811 * 59.99817 * 3 2 1 31 31 H 1.08999 * 109.46994 * 300.00021 * 3 2 1 32 32 H 1.08994 * 109.47386 * 59.99971 * 4 3 2 33 33 H 1.08999 * 109.46931 * 299.99752 * 4 3 2 34 34 H 0.97002 * 119.99905 * 179.97438 * 9 8 6 35 35 H 1.09005 * 117.50774 * 145.05994 * 18 16 14 36 36 H 1.09004 * 117.50532 * 359.97438 * 18 16 14 37 37 H 1.08998 * 109.67500 * 44.07609 * 20 19 16 38 38 H 1.09009 * 109.63023 * 283.45403 * 20 19 16 39 39 H 1.08992 * 109.49832 * 294.03202 * 21 20 19 40 40 H 1.08995 * 109.49790 * 173.96219 * 21 20 19 41 41 H 1.08994 * 109.49955 * 184.34397 * 23 22 21 42 42 H 1.08997 * 109.49779 * 304.41154 * 23 22 21 43 43 H 1.09004 * 109.63137 * 76.53788 * 24 19 16 44 44 H 1.08995 * 109.80257 * 316.03260 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3928 3.4331 -1.1818 7 1 4.2163 4.4905 -1.3131 8 6 4.9588 2.6902 -2.2105 9 7 5.5625 1.5535 -1.9451 10 14 4.8620 3.3073 -3.9710 11 1 5.5339 4.6279 -4.0703 12 1 5.5373 2.3398 -4.8727 13 1 3.4381 3.4453 -4.3696 14 6 4.1786 3.4956 1.1622 15 8 3.8822 2.9567 2.2075 16 6 4.6804 4.9167 1.1627 17 1 4.3891 5.5184 0.3018 18 6 6.0575 5.1798 1.7766 19 6 4.7950 5.6236 2.5114 20 6 4.3858 4.8438 3.7664 21 6 4.9527 5.5675 4.9936 22 8 4.5361 6.9341 4.9712 23 6 5.0464 7.6911 3.8722 24 6 4.4865 7.1239 2.5623 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8891 34 1 5.9573 1.0348 -2.6633 35 1 6.6727 5.9548 1.3193 36 1 6.6003 4.3252 2.1804 37 1 4.7899 3.8327 3.7183 38 1 3.2985 4.8040 3.8345 39 1 6.0413 5.5187 4.9740 40 1 4.5833 5.0894 5.9007 41 1 4.7436 8.7330 3.9763 42 1 6.1344 7.6279 3.8609 43 1 3.4079 7.2773 2.5282 44 1 4.9549 7.6261 1.7159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179312188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:14 Heat of formation + Delta-G solvation = -70.443065 kcal Electronic energy + Delta-G solvation = -23223.326889 eV Core-core repulsion = 19948.030950 eV Total energy + Delta-G solvation = -3275.295939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82556 -38.23492 -36.18947 -34.85905 -33.94227 -31.52340 -30.89303 -29.82874 -28.39544 -24.93480 -24.03964 -23.39670 -22.96822 -21.64766 -20.33117 -19.04771 -18.52805 -16.76146 -16.23154 -15.71744 -15.46405 -14.76192 -14.69364 -14.61174 -14.39572 -13.87254 -13.68464 -13.44316 -12.92120 -12.71347 -12.54156 -12.22499 -11.93937 -11.79627 -11.70663 -11.37872 -11.22434 -11.02240 -10.92420 -10.72063 -10.59481 -10.49261 -10.36192 -10.30330 -10.14490 -9.99438 -9.71518 -9.35220 -9.10981 -8.83965 -8.16310 -7.51912 -6.39093 -4.05346 3.09423 3.18626 3.20501 3.67856 4.04891 4.09574 4.37257 4.67415 4.93602 5.10501 5.22302 5.24941 5.33140 5.44440 5.49173 5.57088 5.61334 5.67325 5.68566 5.83796 5.86767 6.04853 6.07928 6.09940 6.15054 6.19276 6.24981 6.28759 6.40615 6.43304 6.54677 6.57419 6.66282 6.73151 6.74866 6.85121 6.99121 7.14647 7.36443 7.45089 7.48404 7.92863 8.36459 9.06984 9.53262 9.95740 10.62334 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.005674 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.335500 B = 4933.526375 C = 6274.124229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.432 5.432 6 C -0.337 4.337 7 H 0.089 0.911 8 C 0.044 3.956 9 N -0.859 5.859 10 Si 0.911 3.089 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.496 3.504 15 O -0.600 6.600 16 C -0.138 4.138 17 H 0.113 0.887 18 C -0.145 4.145 19 C -0.112 4.112 20 C -0.104 4.104 21 C 0.059 3.941 22 O -0.391 6.391 23 C 0.068 3.932 24 C -0.116 4.116 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 5.321 4.635 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.008 4.008 5 N -0.149 5.149 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.162 4.162 9 N -0.496 5.496 10 Si 0.738 3.262 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.285 3.715 15 O -0.487 6.487 16 C -0.159 4.159 17 H 0.131 0.869 18 C -0.183 4.183 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.018 4.018 22 O -0.309 6.309 23 C -0.009 4.009 24 C -0.153 4.153 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.906 4.942 5.139 7.380 hybrid contribution 0.223 0.156 -1.535 1.559 sum -1.683 5.098 3.604 6.466 Atomic orbital electron populations 1.21755 0.96660 1.00652 1.01472 1.21423 0.94955 0.97766 1.01549 1.21908 0.97969 0.95466 1.01319 1.21418 0.91014 0.84847 1.03483 1.43426 1.54679 1.11864 1.04920 1.19366 1.40989 0.95456 0.90652 0.89371 1.25289 0.94266 0.96373 1.00282 1.69933 1.31380 1.15041 1.33205 0.86254 0.78711 0.78759 0.82507 1.19782 1.20891 1.19830 1.19482 0.81233 0.87153 0.83635 1.90463 1.56219 1.70540 1.31469 1.22057 1.01066 0.96503 0.96239 0.86896 1.22887 0.90026 1.02619 1.02775 1.21377 1.02146 0.94102 0.93684 1.21890 1.01769 0.99739 0.90718 1.22795 0.98171 0.81626 0.99167 1.87802 1.73812 1.22551 1.46784 1.22511 0.97427 0.94908 0.86079 1.21785 1.01908 0.93564 0.98089 0.93082 0.93068 0.93435 0.92307 0.92427 0.92817 0.92473 0.87607 0.93155 0.92021 0.89005 0.88914 0.87999 0.91219 0.93703 0.89412 0.89431 0.93406 0.90934 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.63 5.50 -26.73 -0.15 -2.77 16 4 C 0.12 2.75 4.89 -4.04 -0.02 2.73 16 5 N -0.43 -10.77 2.55 -114.82 -0.29 -11.07 16 6 C -0.34 -8.43 8.72 -14.93 -0.13 -8.56 16 7 H 0.09 2.12 6.51 -52.48 -0.34 1.78 16 8 C 0.04 1.08 4.93 -17.47 -0.09 1.00 16 9 N -0.86 -22.39 11.34 55.50 0.63 -21.76 16 10 Si 0.91 19.21 29.60 -169.99 -5.03 14.18 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 14 C 0.50 11.88 7.36 -10.98 -0.08 11.80 16 15 O -0.60 -15.06 12.81 5.55 0.07 -14.99 16 16 C -0.14 -2.78 5.03 -91.90 -0.46 -3.25 16 17 H 0.11 2.24 6.74 -51.93 -0.35 1.89 16 18 C -0.15 -2.57 9.63 -26.88 -0.26 -2.83 16 19 C -0.11 -1.93 2.03 -154.54 -0.31 -2.25 16 20 C -0.10 -1.84 4.35 -26.40 -0.11 -1.95 16 21 C 0.06 0.87 6.84 37.33 0.26 1.13 16 22 O -0.39 -5.96 10.69 -35.23 -0.38 -6.34 16 23 C 0.07 0.87 6.84 37.33 0.26 1.13 16 24 C -0.12 -1.64 5.91 -26.43 -0.16 -1.80 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.66 5.37 -51.93 -0.28 2.38 16 33 H 0.05 1.24 7.59 -51.93 -0.39 0.85 16 34 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.10 2.04 6.06 -51.93 -0.31 1.72 16 38 H 0.07 1.34 8.10 -51.92 -0.42 0.92 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -27.83 346.97 -8.40 -36.23 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.57 Total: 8.08 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.56 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.34 Total: -32.83 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.31 Total: -21.33 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.83 -8.40 -36.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179312188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.213 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds