Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46935 * 2 1 4 4 C 1.52998 * 109.46935 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47395 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99871 * 270.00456 * 5 4 3 7 7 H 1.08005 * 120.00484 * 146.24115 * 6 5 4 8 8 C 1.38953 * 120.00067 * 326.23998 * 6 5 4 9 9 N 1.31410 * 119.99669 * 336.60378 * 8 6 5 10 10 Si 1.86797 * 120.00177 * 156.60684 * 8 6 5 11 11 H 1.48501 * 109.47045 * 60.00361 * 10 8 6 12 12 H 1.48497 * 109.47090 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47406 * 300.00426 * 10 8 6 14 14 C 1.34774 * 120.00386 * 89.99712 * 5 4 3 15 15 O 1.21295 * 119.99875 * 355.22564 * 14 5 4 16 16 C 1.50701 * 120.00628 * 175.22582 * 14 5 4 17 17 H 1.09004 * 115.55181 * 66.61112 * 16 14 5 18 18 C 1.53042 * 117.50319 * 280.92803 * 16 14 5 19 19 C 1.52731 * 117.50691 * 212.36538 * 16 14 5 20 20 C 1.53272 * 117.81433 * 215.18868 * 19 16 14 21 21 C 1.53405 * 108.36215 * 196.40553 * 20 19 16 22 22 C 1.53059 * 109.07814 * 306.35616 * 21 20 19 23 23 O 1.42836 * 109.83116 * 60.76467 * 22 21 20 24 24 C 1.43137 * 114.08682 * 295.76122 * 23 22 21 25 25 H 1.09001 * 109.47120 * 59.99742 * 1 2 3 26 26 H 1.09000 * 109.47442 * 299.99536 * 1 2 3 27 27 H 1.09002 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47120 * 120.00258 * 2 1 3 29 29 H 1.08995 * 109.47246 * 240.00063 * 2 1 3 30 30 H 1.08995 * 109.47224 * 300.00457 * 3 2 1 31 31 H 1.08999 * 109.46634 * 60.00542 * 3 2 1 32 32 H 1.09001 * 109.47120 * 300.00258 * 4 3 2 33 33 H 1.09003 * 109.47008 * 59.99834 * 4 3 2 34 34 H 0.97000 * 120.00072 * 185.03270 * 9 8 6 35 35 H 1.09002 * 117.50497 * 359.97438 * 18 16 14 36 36 H 1.08998 * 117.51198 * 145.02011 * 18 16 14 37 37 H 1.09002 * 109.68540 * 316.12262 * 20 19 16 38 38 H 1.09000 * 109.68477 * 76.68122 * 20 19 16 39 39 H 1.09001 * 109.53345 * 186.47476 * 21 20 19 40 40 H 1.08999 * 109.59919 * 66.27672 * 21 20 19 41 41 H 1.08997 * 109.40747 * 300.65279 * 22 21 20 42 42 H 1.09002 * 109.40914 * 180.87719 * 22 21 20 43 43 H 1.08993 * 109.59670 * 297.65588 * 24 23 22 44 44 H 1.09008 * 109.71402 * 177.27972 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2862 3.4707 -1.1870 7 1 4.1107 4.5335 -1.2653 8 6 4.7431 2.7591 -2.2896 9 7 5.3837 1.6243 -2.1198 10 14 4.4468 3.4155 -4.0132 11 1 5.0905 4.7464 -4.1534 12 1 5.0286 2.4777 -5.0068 13 1 2.9865 3.5446 -4.2495 14 6 4.2834 3.4584 1.1674 15 8 4.0003 2.9182 2.2158 16 6 4.8869 4.8393 1.1703 17 1 4.2638 5.6256 0.7441 18 6 6.4000 4.9497 0.9692 19 6 5.7894 5.2122 2.3447 20 6 5.7512 6.6608 2.8441 21 6 6.9914 6.9052 3.7132 22 6 7.0550 5.8356 4.8062 23 8 7.1556 4.5407 4.2118 24 6 6.0122 4.1628 3.4380 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9336 0.9285 0.8891 33 1 3.9329 0.9288 -0.8909 34 1 5.7663 1.1643 -2.8833 35 1 6.9590 4.0235 0.8353 36 1 6.7724 5.8086 0.4110 37 1 5.7585 7.3427 1.9938 38 1 4.8502 6.8213 3.4363 39 1 6.9263 7.8918 4.1720 40 1 7.8877 6.8488 3.0955 41 1 6.1523 5.8857 5.4150 42 1 7.9262 6.0134 5.4368 43 1 5.1345 4.1143 4.0823 44 1 6.1838 3.1886 2.9800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183718863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = -73.440701 kcal Electronic energy + Delta-G solvation = -23272.755676 eV Core-core repulsion = 19997.329750 eV Total energy + Delta-G solvation = -3275.425926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.76430 -38.16916 -35.92392 -34.92652 -33.90098 -32.37391 -31.48977 -28.69633 -27.53039 -24.93275 -24.86344 -23.89403 -22.29521 -21.62866 -20.32936 -19.02544 -18.58877 -16.84701 -16.14515 -15.58501 -15.37283 -14.78915 -14.65129 -14.56246 -14.44605 -13.90447 -13.68403 -13.34401 -12.85312 -12.65458 -12.45096 -12.21869 -12.17189 -11.85443 -11.68753 -11.32152 -11.21464 -11.08767 -10.96903 -10.81619 -10.57905 -10.50457 -10.37835 -10.33086 -10.22081 -9.74710 -9.56126 -9.23291 -9.08535 -9.05404 -8.31647 -7.50353 -6.38980 -4.02560 3.09395 3.18987 3.20894 3.82715 3.96296 4.12366 4.50951 4.73798 4.92713 5.02046 5.08552 5.20135 5.29742 5.44046 5.49959 5.55542 5.59881 5.64284 5.68217 5.86145 5.95125 6.02681 6.08353 6.11941 6.21293 6.22093 6.25756 6.36622 6.39871 6.41531 6.47135 6.48597 6.60511 6.74992 6.76354 6.79224 6.85795 7.14322 7.36902 7.52461 7.58822 7.91518 8.38287 9.07207 9.52647 9.95101 10.62199 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.005679 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.382059 B = 4929.360171 C = 6180.171900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.110 3.890 5 N -0.429 5.429 6 C -0.334 4.334 7 H 0.089 0.911 8 C 0.046 3.954 9 N -0.858 5.858 10 Si 0.912 3.088 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.490 3.510 15 O -0.605 6.605 16 C -0.130 4.130 17 H 0.110 0.890 18 C -0.128 4.128 19 C -0.152 4.152 20 C -0.080 4.080 21 C -0.150 4.150 22 C 0.061 3.939 23 O -0.388 6.388 24 C 0.113 3.887 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.271 0.729 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 5.564 4.847 7.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.013 4.013 5 N -0.145 5.145 6 C -0.462 4.462 7 H 0.106 0.894 8 C -0.160 4.160 9 N -0.494 5.494 10 Si 0.738 3.262 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.279 3.721 15 O -0.492 6.492 16 C -0.151 4.151 17 H 0.128 0.872 18 C -0.166 4.166 19 C -0.153 4.153 20 C -0.118 4.118 21 C -0.188 4.188 22 C -0.016 4.016 23 O -0.307 6.307 24 C 0.037 3.963 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.683 4.960 5.217 7.231 hybrid contribution -0.405 0.631 -1.274 1.478 sum -1.088 5.591 3.943 6.928 Atomic orbital electron populations 1.21756 0.96687 1.00640 1.01453 1.21430 0.94942 0.97818 1.01554 1.21875 0.97909 0.95386 1.01294 1.21505 0.91319 0.84864 1.03632 1.43444 1.54665 1.11973 1.04449 1.19330 1.45756 0.94449 0.86692 0.89359 1.25296 0.94610 0.96027 1.00076 1.69834 1.30602 1.17160 1.31848 0.86242 0.79026 0.78826 0.82089 1.19801 1.20920 1.19830 1.19523 0.81705 0.86992 0.83896 1.90512 1.57750 1.68971 1.31923 1.21858 0.94294 0.97722 1.01192 0.87233 1.22840 0.94575 1.02926 0.96246 1.22094 1.05686 0.96269 0.91229 1.21156 0.97589 0.93731 0.99290 1.22157 0.99271 0.98842 0.98511 1.22423 1.01174 0.83741 0.94259 1.87952 1.42386 1.32752 1.67596 1.22180 0.87435 0.96207 0.90449 0.93070 0.93104 0.93447 0.92447 0.92277 0.92354 0.92984 0.93024 0.87317 0.91872 0.88480 0.89127 0.91564 0.91708 0.91421 0.91051 0.93711 0.89702 0.92245 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.13 -2.58 5.54 -26.73 -0.15 -2.73 16 4 C 0.11 2.61 4.97 -4.05 -0.02 2.59 16 5 N -0.43 -10.59 2.55 -114.81 -0.29 -10.88 16 6 C -0.33 -8.26 8.68 -14.93 -0.13 -8.39 16 7 H 0.09 2.11 7.28 -52.48 -0.38 1.73 16 8 C 0.05 1.13 4.94 -17.47 -0.09 1.05 16 9 N -0.86 -22.08 11.32 55.50 0.63 -21.45 16 10 Si 0.91 19.14 29.62 -169.99 -5.03 14.10 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.49 11.74 6.85 -10.99 -0.08 11.66 16 15 O -0.60 -15.45 14.06 5.54 0.08 -15.37 16 16 C -0.13 -2.62 4.40 -91.89 -0.40 -3.03 16 17 H 0.11 2.09 7.99 -51.93 -0.42 1.67 16 18 C -0.13 -2.42 9.62 -26.83 -0.26 -2.67 16 19 C -0.15 -2.71 2.13 -154.54 -0.33 -3.04 16 20 C -0.08 -1.14 5.79 -26.38 -0.15 -1.29 16 21 C -0.15 -1.87 6.16 -26.49 -0.16 -2.03 16 22 C 0.06 0.82 6.72 37.19 0.25 1.07 16 23 O -0.39 -6.84 10.77 -35.23 -0.38 -7.22 16 24 C 0.11 2.16 5.00 37.25 0.19 2.35 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.27 7.49 -51.93 -0.39 0.88 16 33 H 0.11 2.73 5.32 -51.93 -0.28 2.45 16 34 H 0.27 6.62 8.32 -40.82 -0.34 6.29 16 35 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 44 H 0.10 2.17 7.04 -51.92 -0.37 1.80 16 LS Contribution 349.66 15.07 5.27 5.27 Total: -1.00 -27.56 349.66 -8.56 -36.12 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.71 Total: 7.84 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.12 Total: -8.42 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.34 Total: -32.33 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.30 Total: -22.59 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.56 -8.56 -36.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183718863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.317 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds