Wall clock time and date at job start Tue Mar 31 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47472 * 2 1 4 4 C 1.52992 * 109.47236 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47399 * 180.02562 * 4 3 2 6 6 C 1.37095 * 120.00102 * 270.00490 * 5 4 3 7 7 H 1.08003 * 120.00262 * 141.20861 * 6 5 4 8 8 C 1.38958 * 119.99897 * 321.21073 * 6 5 4 9 9 N 1.31419 * 119.99672 * 343.51364 * 8 6 5 10 10 Si 1.86793 * 120.00214 * 163.51934 * 8 6 5 11 11 H 1.48495 * 109.47706 * 59.99444 * 10 8 6 12 12 H 1.48504 * 109.47075 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46756 * 299.99255 * 10 8 6 14 14 C 1.34778 * 120.00140 * 89.99625 * 5 4 3 15 15 O 1.21296 * 119.99765 * 5.34258 * 14 5 4 16 16 C 1.50697 * 119.99970 * 185.34004 * 14 5 4 17 17 H 1.08999 * 115.55273 * 305.15046 * 16 14 5 18 18 C 1.53047 * 117.53177 * 90.89674 * 16 14 5 19 19 C 1.52736 * 117.50496 * 159.45875 * 16 14 5 20 20 C 1.53269 * 117.78816 * 144.76170 * 19 16 14 21 21 C 1.53394 * 108.35497 * 163.67580 * 20 19 16 22 22 C 1.53056 * 109.08535 * 53.63351 * 21 20 19 23 23 O 1.42837 * 109.81926 * 299.20992 * 22 21 20 24 24 C 1.43129 * 114.08976 * 64.26088 * 23 22 21 25 25 H 1.08997 * 109.47789 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47062 * 299.99420 * 1 2 3 27 27 H 1.09000 * 109.47458 * 59.99601 * 1 2 3 28 28 H 1.09007 * 109.46628 * 240.00405 * 2 1 3 29 29 H 1.08997 * 109.47165 * 120.00833 * 2 1 3 30 30 H 1.09002 * 109.46503 * 60.00238 * 3 2 1 31 31 H 1.09000 * 109.47104 * 300.00616 * 3 2 1 32 32 H 1.09002 * 109.47331 * 60.00560 * 4 3 2 33 33 H 1.09000 * 109.47426 * 300.00235 * 4 3 2 34 34 H 0.96995 * 119.99566 * 185.13017 * 9 8 6 35 35 H 1.09008 * 117.50340 * 214.92858 * 18 16 14 36 36 H 1.09002 * 117.50788 * 359.97438 * 18 16 14 37 37 H 1.08997 * 109.68871 * 283.39347 * 20 19 16 38 38 H 1.09001 * 109.68514 * 43.95890 * 20 19 16 39 39 H 1.09000 * 109.53516 * 173.51483 * 21 20 19 40 40 H 1.09002 * 109.53480 * 293.75304 * 21 20 19 41 41 H 1.08999 * 109.41215 * 59.31658 * 22 21 20 42 42 H 1.08996 * 109.41410 * 179.17291 * 22 21 20 43 43 H 1.08999 * 109.59612 * 182.80810 * 24 23 22 44 44 H 1.09001 * 109.59520 * 62.35553 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2864 3.4706 -1.1870 7 1 4.0345 4.5158 -1.2894 8 6 4.8416 2.7816 -2.2584 9 7 5.4422 1.6298 -2.0587 10 14 4.7345 3.4924 -3.9825 11 1 5.4114 4.8137 -4.0162 12 1 5.3979 2.5712 -4.9398 13 1 3.3083 3.6570 -4.3622 14 6 4.2836 3.4583 1.1675 15 8 4.1753 2.8570 2.2153 16 6 4.6699 4.9149 1.1709 17 1 5.5413 5.1716 0.5687 18 6 3.5420 5.9457 1.2576 19 6 4.4486 5.7002 2.4621 20 6 5.4684 6.7866 2.8213 21 6 4.8498 7.6950 3.8914 22 6 4.3683 6.8339 5.0615 23 8 3.3754 5.9124 4.6084 24 6 3.8573 4.9532 3.6616 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 5.8942 1.1849 -2.7925 35 1 3.6715 6.8806 0.7123 36 1 2.5200 5.5704 1.3117 37 1 6.3752 6.3244 3.2115 38 1 5.7073 7.3736 1.9345 39 1 5.5983 8.4042 4.2445 40 1 4.0050 8.2366 3.4656 41 1 5.2119 6.2824 5.4766 42 1 3.9408 7.4757 5.8318 43 1 3.0332 4.3220 3.3290 44 1 4.6282 4.3376 4.1250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183718869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:05 Heat of formation + Delta-G solvation = -74.535839 kcal Electronic energy + Delta-G solvation = -23284.923211 eV Core-core repulsion = 20009.449796 eV Total energy + Delta-G solvation = -3275.473415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82410 -38.17542 -35.97026 -34.93316 -33.91100 -32.39380 -31.48235 -28.70456 -27.57309 -24.94959 -24.85671 -23.91305 -22.34857 -21.61205 -20.34816 -19.04206 -18.64644 -16.88345 -16.11888 -15.59911 -15.41789 -14.88423 -14.70006 -14.58161 -14.26390 -13.89808 -13.81147 -13.33967 -12.86722 -12.68339 -12.45690 -12.21708 -12.10577 -12.01218 -11.76101 -11.35106 -11.17778 -11.12757 -10.99074 -10.82308 -10.59576 -10.50857 -10.40770 -10.33438 -10.22281 -9.73113 -9.64093 -9.26904 -9.11622 -9.05473 -8.33531 -7.45427 -6.36146 -4.09475 3.09493 3.18502 3.19985 3.71076 4.02433 4.09470 4.51022 4.66658 4.95077 4.99231 5.07822 5.16297 5.26423 5.42207 5.46042 5.49586 5.58687 5.61844 5.67715 5.83889 5.93632 6.00261 6.07057 6.09593 6.14108 6.19923 6.25558 6.31023 6.36241 6.39705 6.45130 6.47864 6.60886 6.67117 6.73722 6.78396 6.84232 7.15395 7.36552 7.54986 7.57152 7.98518 8.38925 9.06161 9.51611 9.94444 10.65090 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.005844 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.671483 B = 4789.902371 C = 6145.376471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.110 3.890 5 N -0.432 5.432 6 C -0.335 4.335 7 H 0.089 0.911 8 C 0.043 3.957 9 N -0.865 5.865 10 Si 0.916 3.084 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.497 3.503 15 O -0.602 6.602 16 C -0.130 4.130 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.147 4.147 20 C -0.082 4.082 21 C -0.150 4.150 22 C 0.061 3.939 23 O -0.390 6.390 24 C 0.113 3.887 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.270 0.730 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 6.346 4.909 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.165 4.165 4 C -0.014 4.014 5 N -0.148 5.148 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.502 5.502 10 Si 0.743 3.257 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.286 3.714 15 O -0.489 6.489 16 C -0.151 4.151 17 H 0.137 0.863 18 C -0.183 4.183 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.188 4.188 22 C -0.016 4.016 23 O -0.309 6.309 24 C 0.038 3.962 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.897 5.832 5.313 8.404 hybrid contribution 0.441 0.383 -1.339 1.461 sum -2.456 6.216 3.974 7.775 Atomic orbital electron populations 1.21757 0.96660 1.00669 1.01459 1.21425 0.94937 0.97757 1.01608 1.21892 0.97972 0.95437 1.01155 1.21501 0.91009 0.85033 1.03837 1.43349 1.55150 1.11944 1.04375 1.19403 1.42046 0.96414 0.88406 0.89336 1.25413 0.94694 0.95945 1.00164 1.69781 1.31035 1.16387 1.33014 0.86172 0.78749 0.78830 0.81971 1.19801 1.20911 1.19775 1.19524 0.80191 0.87529 0.84183 1.90500 1.58170 1.68173 1.32077 1.22021 1.01602 0.92321 0.99179 0.86252 1.22912 0.95752 0.99549 1.00046 1.22079 1.01266 1.00253 0.91205 1.21169 0.96773 0.95243 0.98711 1.22157 1.01010 0.98412 0.97178 1.22426 0.92178 0.91612 0.95429 1.87953 1.36376 1.45420 1.61195 1.22283 1.00026 0.87996 0.85917 0.93429 0.93106 0.93053 0.92223 0.92435 0.93280 0.92287 0.87315 0.92805 0.91905 0.88898 0.88955 0.91527 0.91479 0.91372 0.91148 0.93661 0.89749 0.87668 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.56 5.54 -26.74 -0.15 -2.71 16 4 C 0.11 2.60 5.04 -4.04 -0.02 2.58 16 5 N -0.43 -10.70 2.52 -114.81 -0.29 -10.99 16 6 C -0.33 -8.31 8.64 -14.93 -0.13 -8.44 16 7 H 0.09 2.12 7.33 -52.48 -0.38 1.73 16 8 C 0.04 1.08 5.07 -17.46 -0.09 0.99 16 9 N -0.87 -22.59 11.24 55.50 0.62 -21.96 16 10 Si 0.92 19.22 29.59 -169.99 -5.03 14.19 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.50 11.91 7.14 -10.99 -0.08 11.83 16 15 O -0.60 -15.35 13.27 5.54 0.07 -15.28 16 16 C -0.13 -2.62 4.40 -91.88 -0.40 -3.02 16 17 H 0.12 2.40 8.07 -51.93 -0.42 1.98 16 18 C -0.15 -2.52 9.62 -26.84 -0.26 -2.78 16 19 C -0.15 -2.56 2.14 -154.54 -0.33 -2.89 16 20 C -0.08 -1.15 5.79 -26.39 -0.15 -1.31 16 21 C -0.15 -1.82 6.16 -26.50 -0.16 -1.99 16 22 C 0.06 0.80 6.72 37.19 0.25 1.05 16 23 O -0.39 -6.67 10.77 -35.23 -0.38 -7.05 16 24 C 0.11 2.11 4.95 37.25 0.18 2.29 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.11 2.75 5.41 -51.93 -0.28 2.47 16 33 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 34 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 35 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.11 2.19 6.70 -51.93 -0.35 1.84 16 44 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -27.76 348.88 -8.57 -36.32 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.70 Total: 7.82 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.13 Total: -8.31 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.33 Total: -32.95 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.31 Total: -22.33 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.76 -8.57 -36.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183718869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.212 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds