Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47391 * 2 1 4 4 C 1.52996 * 109.47391 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47237 * 179.97438 * 4 3 2 6 6 C 1.37106 * 119.99669 * 90.00221 * 5 4 3 7 7 H 1.07998 * 119.99704 * 221.39686 * 6 5 4 8 8 C 1.38943 * 120.00055 * 41.40210 * 6 5 4 9 9 N 1.31413 * 120.00287 * 25.36116 * 8 6 5 10 10 Si 1.86800 * 119.99899 * 205.36116 * 8 6 5 11 11 H 1.48501 * 109.47077 * 269.99849 * 10 8 6 12 12 H 1.48503 * 109.47032 * 29.99966 * 10 8 6 13 13 H 1.48500 * 109.47302 * 150.00084 * 10 8 6 14 14 C 1.34772 * 120.00386 * 270.00088 * 5 4 3 15 15 O 1.21298 * 119.99924 * 354.97958 * 14 5 4 16 16 C 1.50702 * 120.00397 * 174.97627 * 14 5 4 17 17 H 1.09005 * 115.55204 * 34.50251 * 16 14 5 18 18 C 1.53049 * 117.50774 * 180.20363 * 16 14 5 19 19 C 1.52723 * 59.93980 * 107.46886 * 18 16 14 20 20 C 1.53274 * 117.80929 * 252.27651 * 19 18 16 21 21 C 1.53405 * 108.36568 * 163.62418 * 20 19 18 22 22 C 1.53057 * 109.07941 * 53.63805 * 21 20 19 23 23 O 1.42833 * 109.83096 * 299.23235 * 22 21 20 24 24 C 1.43127 * 114.08605 * 64.23631 * 23 22 21 25 25 H 1.08999 * 109.47115 * 60.00125 * 1 2 3 26 26 H 1.09001 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47345 * 299.99705 * 1 2 3 28 28 H 1.09002 * 109.47184 * 239.99769 * 2 1 3 29 29 H 1.08999 * 109.47036 * 120.00659 * 2 1 3 30 30 H 1.09002 * 109.47145 * 59.99745 * 3 2 1 31 31 H 1.09005 * 109.47316 * 299.99975 * 3 2 1 32 32 H 1.09000 * 109.47345 * 60.00295 * 4 3 2 33 33 H 1.08999 * 109.47115 * 299.99875 * 4 3 2 34 34 H 0.97001 * 119.99927 * 5.79909 * 9 8 6 35 35 H 1.09004 * 117.50554 * 214.94332 * 18 16 14 36 36 H 1.09004 * 117.50691 * 359.96803 * 18 16 14 37 37 H 1.08995 * 109.68076 * 283.34101 * 20 19 18 38 38 H 1.08995 * 109.68404 * 43.86689 * 20 19 18 39 39 H 1.08992 * 109.52916 * 173.51584 * 21 20 19 40 40 H 1.09000 * 109.53267 * 293.67730 * 21 20 19 41 41 H 1.08995 * 109.41223 * 59.34679 * 22 21 20 42 42 H 1.09000 * 109.40622 * 179.20298 * 22 21 20 43 43 H 1.09007 * 109.58863 * 182.79758 * 24 23 22 44 44 H 1.09002 * 109.59074 * 62.35940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2864 3.4706 1.1871 7 1 3.9958 4.5042 1.3033 8 6 4.8914 2.7964 2.2407 9 7 5.6765 1.7704 1.9999 10 14 4.5890 3.3485 3.9994 11 1 5.6096 4.3561 4.3844 12 1 3.2353 3.9503 4.1034 13 1 4.6815 2.1780 4.9086 14 6 4.2835 3.4583 -1.1674 15 8 4.1696 2.8586 -2.2156 16 6 4.6766 4.9131 -1.1706 17 1 5.3023 5.2329 -0.3372 18 6 4.9138 5.5783 -2.5284 19 6 3.6637 5.9165 -1.7188 20 6 2.3200 5.3740 -2.2181 21 6 1.3031 5.4740 -1.0738 22 6 1.2771 6.9126 -0.5519 23 8 2.5674 7.2715 -0.0556 24 6 3.5918 7.2950 -1.0549 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 5.9010 1.5355 1.0859 35 1 5.6951 6.3360 -2.5882 36 1 4.7859 4.9635 -3.4194 37 1 1.9774 5.9664 -3.0665 38 1 2.4335 4.3327 -2.5192 39 1 0.3137 5.2014 -1.4407 40 1 1.5925 4.7982 -0.2690 41 1 1.0001 7.5869 -1.3621 42 1 0.5457 6.9929 0.2523 43 1 4.5502 7.5275 -0.5905 44 1 3.3539 8.0497 -1.8045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183718871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = -78.349765 kcal Electronic energy + Delta-G solvation = -24010.042092 eV Core-core repulsion = 20734.403293 eV Total energy + Delta-G solvation = -3275.638799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92983 -38.25785 -36.16906 -34.91803 -34.06051 -32.36806 -31.29170 -28.78903 -27.74526 -25.03629 -24.52455 -24.10416 -22.01963 -21.59151 -20.46974 -19.45626 -18.77044 -16.85208 -16.17017 -15.83491 -15.62686 -14.90137 -14.84078 -14.57589 -14.24793 -13.83790 -13.78665 -13.29089 -12.90597 -12.73962 -12.51122 -12.38514 -12.36080 -11.97495 -11.83054 -11.30302 -11.06514 -11.00243 -10.79319 -10.66850 -10.62034 -10.59072 -10.39193 -10.23512 -10.00227 -9.83071 -9.63788 -9.34537 -9.18727 -8.95767 -8.42474 -7.67821 -6.59054 -4.05684 3.27359 3.35298 3.52614 3.54674 4.07582 4.20834 4.44066 4.60814 4.98193 5.04490 5.14904 5.17560 5.28279 5.33268 5.39874 5.46909 5.53615 5.57878 5.63070 5.73636 5.81597 5.89769 5.94587 6.06205 6.11502 6.16764 6.22437 6.25439 6.26737 6.33770 6.36839 6.48146 6.56602 6.62072 6.65185 6.66291 6.74330 6.94776 7.06860 7.42145 7.75054 8.07940 8.44633 9.03563 9.50593 9.85027 10.62510 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.007942 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.879586 B = 3524.507082 C = 4305.880135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.107 3.893 5 N -0.443 5.443 6 C -0.422 4.422 7 H 0.083 0.917 8 C 0.017 3.983 9 N -0.870 5.870 10 Si 1.067 2.933 11 H -0.285 1.285 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.504 3.496 15 O -0.607 6.607 16 C -0.132 4.132 17 H 0.122 0.878 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.153 4.153 22 C 0.066 3.934 23 O -0.375 6.375 24 C 0.103 3.897 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.277 0.723 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.420 6.175 -3.819 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.160 4.160 4 C -0.017 4.017 5 N -0.161 5.161 6 C -0.549 4.549 7 H 0.100 0.900 8 C -0.193 4.193 9 N -0.502 5.502 10 Si 0.894 3.106 11 H -0.211 1.211 12 H -0.208 1.208 13 H -0.206 1.206 14 C 0.294 3.706 15 O -0.494 6.494 16 C -0.153 4.153 17 H 0.140 0.860 18 C -0.189 4.189 19 C -0.145 4.145 20 C -0.125 4.125 21 C -0.191 4.191 22 C -0.011 4.011 23 O -0.294 6.294 24 C 0.026 3.974 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.121 5.504 -2.507 9.343 hybrid contribution -0.272 0.313 -1.746 1.794 sum -7.393 5.817 -4.253 10.324 Atomic orbital electron populations 1.21743 0.96413 1.00800 1.01521 1.21455 0.95240 0.97599 1.01647 1.21822 0.96981 0.95632 1.01589 1.21389 0.92622 0.85571 1.02097 1.43414 1.55885 1.11710 1.05047 1.20206 1.44035 0.99666 0.90997 0.89961 1.26321 0.92178 0.95761 1.04993 1.70693 1.26897 1.28013 1.24645 0.83543 0.76648 0.76180 0.74258 1.21128 1.20784 1.20639 1.19488 0.79558 0.87648 0.83883 1.90500 1.58143 1.68307 1.32427 1.22140 1.02573 0.92745 0.97806 0.86041 1.22935 0.97730 1.02381 0.95881 1.22008 0.92151 0.96558 1.03766 1.21225 0.92177 1.02393 0.96686 1.22165 0.99055 0.98146 0.99693 1.22461 0.85321 0.94624 0.98727 1.87981 1.17421 1.89278 1.34688 1.22146 0.91851 0.92927 0.90458 0.93130 0.93309 0.92898 0.92467 0.92115 0.91857 0.92968 0.92409 0.89913 0.91216 0.88892 0.87952 0.92267 0.89909 0.91577 0.90091 0.93901 0.89367 0.88841 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -2.01 5.93 -26.74 -0.16 -2.16 16 3 C -0.12 -2.43 5.54 -26.74 -0.15 -2.57 16 4 C 0.11 2.49 4.63 -4.04 -0.02 2.47 16 5 N -0.44 -10.97 2.22 -114.81 -0.26 -11.23 16 6 C -0.42 -10.77 8.17 -14.93 -0.12 -10.90 16 7 H 0.08 2.13 7.34 -52.49 -0.39 1.75 16 8 C 0.02 0.43 4.81 -17.47 -0.08 0.34 16 9 N -0.87 -23.89 12.35 55.50 0.69 -23.20 16 10 Si 1.07 23.07 29.99 -169.99 -5.10 17.97 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 C 0.50 12.18 6.28 -10.99 -0.07 12.12 16 15 O -0.61 -15.71 14.68 5.54 0.08 -15.63 16 16 C -0.13 -2.72 4.81 -91.87 -0.44 -3.17 16 17 H 0.12 2.61 7.34 -51.93 -0.38 2.23 16 18 C -0.15 -2.60 9.51 -26.85 -0.26 -2.86 16 19 C -0.14 -2.47 2.14 -154.55 -0.33 -2.81 16 20 C -0.09 -1.48 5.45 -26.38 -0.14 -1.63 16 21 C -0.15 -2.43 6.16 -26.49 -0.16 -2.60 16 22 C 0.07 0.94 6.72 37.19 0.25 1.19 16 23 O -0.38 -6.34 10.77 -35.23 -0.38 -6.72 16 24 C 0.10 1.56 6.63 37.25 0.25 1.81 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.39 7.36 -51.93 -0.38 1.01 16 33 H 0.08 2.05 5.87 -51.93 -0.30 1.75 16 34 H 0.28 7.85 7.42 -40.82 -0.30 7.55 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.10 1.87 7.67 -51.93 -0.40 1.47 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.65 6.05 -51.93 -0.31 1.34 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -29.02 349.14 -8.38 -37.40 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.60 Total: 8.57 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.07 Total: -12.43 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.43 Total: -34.43 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.30 Total: -22.34 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.10 Total: 17.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.02 -8.38 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183718871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.952 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds