Wall clock time and date at job start Tue Mar 31 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46627 * 2 1 4 4 C 1.53001 * 109.46992 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47744 * 179.60321 * 4 3 2 6 6 C 1.46899 * 110.99474 * 298.09047 * 5 4 3 7 7 C 1.50702 * 109.47043 * 292.94585 * 6 5 4 8 8 H 1.08002 * 120.00053 * 354.95878 * 7 6 5 9 9 C 1.37878 * 119.99951 * 174.96529 * 7 6 5 10 10 N 1.31509 * 120.00102 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00051 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46689 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47235 * 119.99321 * 11 9 7 14 14 H 1.48496 * 109.47178 * 239.99719 * 11 9 7 15 15 C 1.46901 * 110.99912 * 62.03640 * 5 4 3 16 16 C 1.50700 * 109.46910 * 66.05075 * 15 5 4 17 17 C 1.34522 * 125.78769 * 89.99854 * 16 15 5 18 18 C 1.41381 * 106.84012 * 179.77336 * 17 16 15 19 19 C 1.34514 * 106.83958 * 0.22832 * 18 17 16 20 20 C 1.50703 * 125.78797 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.46856 * 89.99822 * 20 19 18 22 22 C 1.42911 * 113.99752 * 179.97438 * 21 20 19 23 23 O 1.34299 * 108.42252 * 359.97438 * 19 18 17 24 24 H 1.08995 * 109.47208 * 59.99690 * 1 2 3 25 25 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46923 * 299.99481 * 1 2 3 27 27 H 1.09003 * 109.46504 * 240.00186 * 2 1 3 28 28 H 1.08995 * 109.47208 * 120.00310 * 2 1 3 29 29 H 1.09002 * 109.47045 * 60.00593 * 3 2 1 30 30 H 1.08995 * 109.47579 * 300.00082 * 3 2 1 31 31 H 1.09006 * 109.47089 * 59.59797 * 4 3 2 32 32 H 1.09007 * 109.47140 * 299.60314 * 4 3 2 33 33 H 1.09004 * 109.47853 * 52.94680 * 6 5 4 34 34 H 1.08999 * 109.47469 * 172.94854 * 6 5 4 35 35 H 0.97003 * 120.00072 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47125 * 306.05249 * 15 5 4 37 37 H 1.09000 * 109.46819 * 186.05065 * 15 5 4 38 38 H 1.08001 * 126.57954 * 0.03286 * 17 16 15 39 39 H 1.08001 * 126.58274 * 180.25896 * 18 17 16 40 40 H 1.09003 * 109.47156 * 209.99220 * 20 19 18 41 41 H 1.09002 * 109.47210 * 330.00022 * 20 19 18 42 42 H 1.08995 * 109.46458 * 60.00316 * 22 21 20 43 43 H 1.08999 * 109.46514 * 179.97438 * 22 21 20 44 44 H 1.08992 * 109.46960 * 300.00147 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0597 2.8275 -0.0102 6 6 3.6258 3.5308 -1.2248 7 6 4.3049 2.9247 -2.4259 8 1 5.0507 2.1549 -2.2933 9 6 3.9740 3.3530 -3.6940 10 7 3.0655 4.2900 -3.8555 11 14 4.8152 2.6012 -5.1829 12 1 5.7905 1.5750 -4.7347 13 1 3.7973 1.9680 -6.0593 14 1 5.5269 3.6634 -5.9381 15 6 3.6294 3.5464 1.1964 16 6 4.2930 2.9399 2.4059 17 6 5.4767 3.3140 2.9242 18 6 5.7108 2.4888 4.0481 19 6 4.6587 1.6564 4.1463 20 6 4.4701 0.5949 5.1993 21 8 3.7778 1.1519 6.3185 22 6 3.5460 0.2230 7.3795 23 8 3.8044 1.9325 3.1476 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9227 -0.8873 32 1 3.9338 0.9348 0.8927 33 1 2.5452 3.4371 -1.3326 34 1 3.8933 4.5848 -1.1496 35 1 2.8325 4.5911 -4.7477 36 1 2.5470 3.4691 1.2988 37 1 3.9126 4.5958 1.1145 38 1 6.1220 4.0975 2.5554 39 1 6.5694 2.5210 4.7025 40 1 3.8880 -0.2284 4.7851 41 1 5.4438 0.2256 5.5214 42 1 4.5003 -0.1543 7.7469 43 1 3.0168 0.7229 8.1907 44 1 2.9447 -0.6076 7.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231690725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:19 Heat of formation + Delta-G solvation = -36.872590 kcal Electronic energy + Delta-G solvation = -22479.113009 eV Core-core repulsion = 19205.272795 eV Total energy + Delta-G solvation = -3273.840214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.32987 -38.04466 -37.51713 -33.96788 -32.83642 -32.62791 -31.18875 -28.62350 -28.18059 -26.60892 -25.45743 -23.88295 -23.02172 -21.51276 -21.12066 -20.16551 -19.26467 -16.93200 -16.73426 -16.20529 -15.92943 -15.72722 -15.11673 -14.91390 -14.74064 -14.37918 -13.75348 -13.70084 -13.42847 -12.89914 -12.55002 -12.45785 -12.37218 -12.20615 -12.04271 -11.87050 -11.64744 -11.20555 -11.13338 -10.91088 -10.73347 -10.66960 -10.53456 -10.43885 -9.99991 -9.93911 -9.77265 -9.57336 -9.22869 -8.44576 -8.13708 -7.21798 -6.03294 -4.04027 1.82579 2.79598 3.06441 3.30811 3.38590 3.43683 3.88809 4.43035 4.72432 4.91760 5.00241 5.07266 5.10651 5.11332 5.27053 5.32317 5.33158 5.35465 5.38358 5.38898 5.57092 5.76179 5.88704 5.96173 6.04735 6.14210 6.15486 6.24692 6.29193 6.29507 6.36501 6.49263 6.58955 6.76806 6.78999 6.83477 6.97023 7.25069 7.40150 7.47630 7.79275 8.04491 8.15122 8.50693 9.03982 9.60080 11.07326 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.004097 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.207304 B = 6831.838134 C = 7692.947336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.157 4.157 4 C 0.067 3.933 5 N -0.529 5.529 6 C 0.188 3.812 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.123 3.877 16 C 0.031 3.969 17 C -0.208 4.208 18 C -0.178 4.178 19 C -0.040 4.040 20 C 0.148 3.852 21 O -0.387 6.387 22 C 0.031 3.969 23 O -0.168 6.168 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.007 0.993 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.149 0.851 39 H 0.144 0.856 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -7.778 17.529 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.196 4.196 4 C -0.062 4.062 5 N -0.253 5.253 6 C 0.064 3.936 7 C -0.541 4.541 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.005 4.005 16 C -0.020 4.020 17 C -0.228 4.228 18 C -0.198 4.198 19 C -0.090 4.090 20 C 0.072 3.928 21 O -0.306 6.306 22 C -0.065 4.065 23 O -0.065 6.065 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.113 -7.634 17.328 18.935 hybrid contribution -0.211 -0.463 -0.806 0.953 sum -0.097 -8.097 16.522 18.400 Atomic orbital electron populations 1.21765 0.96569 1.00737 1.01636 1.21397 0.95220 0.97465 1.01334 1.22230 0.98687 0.96531 1.02114 1.22042 0.91755 0.90990 1.01400 1.62438 1.59111 1.02148 1.01581 1.19833 0.94976 0.93820 0.84999 1.21148 1.21848 1.21302 0.89851 0.91828 1.24962 0.95285 0.95263 0.99013 1.69959 1.31964 1.29400 1.22495 0.86474 0.79379 0.79139 0.82650 1.19651 1.21151 1.21052 1.20659 0.96886 0.97382 0.85578 1.22694 0.95315 0.89127 0.94853 1.21523 0.98002 1.04777 0.98519 1.21542 1.00238 0.97742 1.00240 1.21650 0.91684 1.02786 0.92884 1.20589 0.97279 0.91514 0.83432 1.88006 1.77860 1.37314 1.27409 1.22767 1.00149 0.93562 0.90054 1.83976 1.44298 1.44270 1.33933 0.92696 0.93430 0.93243 0.92059 0.92852 0.92989 0.90498 0.89967 0.93031 0.97554 0.95521 0.93001 0.93518 0.88276 0.83365 0.83833 0.91658 0.90290 0.93883 0.89414 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -1.80 5.93 -26.73 -0.16 -1.96 16 3 C -0.16 -2.87 4.56 -26.73 -0.12 -2.99 16 4 C 0.07 1.32 4.99 -3.82 -0.02 1.30 16 5 N -0.53 -11.32 4.69 -237.51 -1.11 -12.44 16 6 C 0.19 4.73 4.52 -4.98 -0.02 4.71 16 7 C -0.50 -13.83 8.40 -34.44 -0.29 -14.12 16 8 H 0.06 1.76 7.37 -52.49 -0.39 1.37 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 11 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.12 2.27 5.29 -4.98 -0.03 2.24 16 16 C 0.03 0.55 5.89 -35.62 -0.21 0.34 16 17 C -0.21 -3.36 10.81 -39.70 -0.43 -3.78 16 18 C -0.18 -2.58 10.81 -39.70 -0.43 -3.01 16 19 C -0.04 -0.60 6.95 -35.62 -0.25 -0.84 16 20 C 0.15 1.67 6.47 36.01 0.23 1.90 16 21 O -0.39 -4.67 10.69 -35.23 -0.38 -5.05 16 22 C 0.03 0.24 11.01 101.05 1.11 1.35 16 23 O -0.17 -2.91 9.98 5.73 0.06 -2.85 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.93 6.34 -51.93 -0.33 0.60 16 30 H 0.08 1.62 6.28 -51.93 -0.33 1.29 16 31 H 0.08 1.77 6.98 -51.93 -0.36 1.41 16 32 H 0.05 0.98 6.70 -51.92 -0.35 0.63 16 33 H 0.01 0.18 6.01 -51.93 -0.31 -0.13 16 34 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.05 0.85 6.07 -51.93 -0.32 0.54 16 37 H 0.10 1.74 7.92 -51.93 -0.41 1.33 16 38 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -30.57 357.92 -8.07 -38.64 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.41 Total: 0.41 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -0.34 Total: -15.10 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.38 Total: -37.90 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.32 Total: -7.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.57 -8.07 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231690725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.763 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds