Wall clock time and date at job start Tue Mar 31 2020 05:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 C 1.53001 * 109.47412 * 239.99899 * 2 1 3 5 5 O 1.45202 * 109.47489 * 120.00089 * 2 1 3 6 6 C 1.34651 * 117.00122 * 59.99404 * 5 2 1 7 7 O 1.21519 * 119.99737 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00488 * 180.02562 * 6 5 2 9 9 C 1.39412 * 120.65894 * 0.04889 * 8 6 5 10 10 C 1.31030 * 121.84581 * 166.77191 * 9 8 6 11 11 C 1.50705 * 118.54116 * 180.36830 * 10 9 8 12 12 C 1.53003 * 109.46850 * 94.97668 * 11 10 9 13 13 C 1.50695 * 109.47195 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99735 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00029 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99754 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47207 * 59.99540 * 17 15 13 19 19 H 1.48500 * 109.46676 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46858 * 299.99407 * 17 15 13 21 21 C 1.50200 * 122.92002 * 0.34698 * 10 9 8 22 22 C 1.53031 * 110.33709 * 339.91615 * 21 10 9 23 23 C 1.47038 * 120.57979 * 180.02562 * 8 6 5 24 24 H 1.09010 * 109.47265 * 299.99652 * 1 2 3 25 25 H 1.08995 * 109.47450 * 59.99988 * 1 2 3 26 26 H 1.09004 * 109.47580 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46835 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47168 * 299.99562 * 3 2 1 29 29 H 1.08999 * 109.47231 * 60.00301 * 3 2 1 30 30 H 1.08996 * 109.46815 * 300.00497 * 4 2 1 31 31 H 1.09002 * 109.46765 * 60.00033 * 4 2 1 32 32 H 1.08997 * 109.47611 * 179.97438 * 4 2 1 33 33 H 1.08005 * 119.05952 * 346.75686 * 9 8 6 34 34 H 1.09000 * 109.47117 * 214.97574 * 11 10 9 35 35 H 1.08998 * 109.46766 * 334.98282 * 11 10 9 36 36 H 1.08997 * 109.47147 * 300.00638 * 12 11 10 37 37 H 1.09003 * 109.47129 * 60.00008 * 12 11 10 38 38 H 0.96999 * 120.00565 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.32582 * 219.64552 * 21 10 9 40 40 H 1.08998 * 109.18462 * 100.08855 * 21 10 9 41 41 H 1.09000 * 109.61557 * 289.93253 * 22 21 10 42 42 H 1.08997 * 109.61880 * 169.39346 * 22 21 10 43 43 H 1.09002 * 109.82627 * 104.04715 * 23 8 6 44 44 H 1.08998 * 109.82297 * 343.18457 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3384 7 8 0.9514 -2.5098 0.5036 8 7 2.0671 -2.6656 2.4171 9 6 2.8706 -2.0625 3.3837 10 6 3.0786 -2.6157 4.5532 11 6 3.9537 -1.8943 5.5456 12 6 3.0791 -1.0661 6.4891 13 6 3.9542 -0.3442 7.4811 14 1 5.0268 -0.4644 7.4427 15 6 3.3854 0.4689 8.4384 16 7 2.0793 0.6149 8.4854 17 14 4.4702 1.3644 9.6676 18 1 5.4033 2.2631 8.9418 19 1 3.6213 2.1680 10.5834 20 1 5.2483 0.3740 10.4545 21 6 2.4832 -3.9367 4.9487 22 6 1.2762 -4.2618 4.0659 23 6 1.6800 -4.0727 2.5964 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 3.3346 -1.1127 3.1621 34 1 4.5239 -2.6217 6.1234 35 1 4.6394 -1.2350 5.0134 36 1 2.5089 -0.3388 5.9113 37 1 2.3933 -1.7254 7.0213 38 1 1.6791 1.1872 9.1586 39 1 2.1666 -3.8921 5.9907 40 1 3.2351 -4.7174 4.8334 41 1 0.4534 -3.5896 4.3091 42 1 0.9696 -5.2946 4.2312 43 1 2.5230 -4.7213 2.3581 44 1 0.8366 -4.3096 1.9479 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:33 Heat of formation + Delta-G solvation = -87.248900 kcal Electronic energy + Delta-G solvation = -22772.039355 eV Core-core repulsion = 19496.014660 eV Total energy + Delta-G solvation = -3276.024695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96949 -38.91185 -36.71917 -34.50188 -34.03873 -32.64327 -31.95948 -29.08979 -27.47054 -27.44326 -25.90913 -25.01168 -22.91347 -21.99160 -20.63950 -19.61398 -18.24289 -17.68917 -16.55736 -16.24995 -16.08010 -15.11721 -14.78184 -14.60225 -14.45565 -14.25682 -13.58403 -13.42496 -13.14054 -12.76344 -12.70979 -12.49133 -12.36374 -12.17038 -11.95440 -11.93268 -11.83099 -11.41698 -11.34581 -11.22510 -10.90808 -10.77932 -10.64141 -10.39231 -10.37183 -10.19189 -10.03170 -9.70438 -9.48723 -9.06733 -8.32262 -7.46152 -5.97456 -4.00314 2.16979 2.32400 3.24095 3.34395 3.38905 3.41375 3.89766 4.47765 4.64955 4.70207 4.83301 4.87320 5.04381 5.08977 5.38023 5.38038 5.42146 5.45528 5.48610 5.60541 5.62896 5.71378 5.72511 5.77721 5.84439 5.86705 5.94878 6.15720 6.19277 6.23065 6.30304 6.35024 6.40772 6.64634 6.66543 6.77202 7.10421 7.31829 7.63305 7.71270 7.87305 8.03243 8.36426 8.44240 9.06882 9.63576 11.13451 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.004273 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.439153 B = 6551.017691 C = 7684.063943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.134 3.866 3 C -0.142 4.142 4 C -0.182 4.182 5 O -0.353 6.353 6 C 0.656 3.344 7 O -0.570 6.570 8 N -0.534 5.534 9 C 0.041 3.959 10 C -0.143 4.143 11 C -0.068 4.068 12 C 0.030 3.970 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.080 4.080 22 C -0.135 4.135 23 C 0.122 3.878 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -5.585 -16.802 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.097 3.903 3 C -0.199 4.199 4 C -0.239 4.239 5 O -0.267 6.267 6 C 0.412 3.588 7 O -0.461 6.461 8 N -0.265 5.265 9 C -0.069 4.069 10 C -0.147 4.147 11 C -0.107 4.107 12 C -0.007 4.007 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.117 4.117 22 C -0.173 4.173 23 C 0.001 3.999 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.896 -5.587 -17.079 18.069 hybrid contribution 0.492 0.666 0.756 1.121 sum -1.404 -4.921 -16.323 17.107 Atomic orbital electron populations 1.22515 0.94058 1.04945 1.02562 1.22081 0.94403 0.91703 0.82085 1.21865 1.02364 0.92469 1.03210 1.22511 1.01562 1.03364 0.96500 1.86393 1.71032 1.23237 1.46085 1.17916 0.78508 0.80646 0.81738 1.90859 1.41418 1.70702 1.43082 1.44522 1.49975 1.11903 1.20065 1.20587 0.97837 0.99232 0.89267 1.21427 1.01899 0.97528 0.93895 1.20676 0.96881 0.97715 0.95406 1.19058 0.94573 0.94048 0.93000 1.21241 0.93291 1.27271 1.14234 0.92720 1.25009 0.94899 0.96756 0.97662 1.69956 1.09537 1.38821 1.35097 0.86684 0.80435 0.79828 0.81195 1.20257 1.21335 1.20256 1.20334 0.96146 0.94742 1.00498 1.21945 0.99228 1.02348 0.93812 1.21865 1.01261 0.78766 0.97973 0.91913 0.91257 0.89522 0.91386 0.90274 0.91112 0.89515 0.91253 0.92183 0.83964 0.92468 0.92694 0.96562 0.96581 0.92992 0.89843 0.91184 0.90898 0.90074 0.90845 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.37 37.15 0.31 -1.88 16 2 C 0.13 1.66 1.13 -90.62 -0.10 1.56 16 3 C -0.14 -1.44 8.85 37.16 0.33 -1.11 16 4 C -0.18 -2.04 8.37 37.16 0.31 -1.72 16 5 O -0.35 -5.50 8.81 -40.35 -0.36 -5.85 16 6 C 0.66 10.64 7.70 54.05 0.42 11.06 16 7 O -0.57 -9.49 11.37 -19.29 -0.22 -9.71 16 8 N -0.53 -8.41 2.96 -121.02 -0.36 -8.77 16 9 C 0.04 0.69 9.41 -15.82 -0.15 0.54 16 10 C -0.14 -2.48 5.15 -101.31 -0.52 -3.01 16 11 C -0.07 -1.39 5.22 -27.88 -0.15 -1.53 16 12 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 13 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.08 -1.17 5.84 -28.11 -0.16 -1.34 16 22 C -0.14 -1.72 6.18 -26.42 -0.16 -1.88 16 23 C 0.12 1.58 6.40 -3.46 -0.02 1.56 16 24 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 27 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.14 2.48 7.26 -52.48 -0.38 2.10 16 34 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.19 7.16 -51.93 -0.37 0.82 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -31.27 351.65 -8.02 -39.30 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.65 Total: -0.11 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.45 Total: -10.53 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.38 Total: -34.95 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.57 Total: -15.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.27 -8.02 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.952 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds