Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42906 * 109.46688 * 141.37864 * 3 2 1 5 5 C 1.42901 * 113.99971 * 179.97438 * 4 3 2 6 6 C 1.52991 * 109.46984 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47413 * 304.99647 * 6 5 4 8 8 O 1.42899 * 109.47367 * 65.00757 * 6 5 4 9 9 C 1.53004 * 109.46940 * 185.00060 * 6 5 4 10 10 N 1.46905 * 109.47017 * 183.56007 * 9 6 5 11 11 C 1.46905 * 110.99420 * 169.34217 * 10 9 6 12 12 C 1.50699 * 109.46779 * 199.55942 * 11 10 9 13 13 H 1.08004 * 120.00208 * 5.06098 * 12 11 10 14 14 C 1.37877 * 120.00219 * 185.06328 * 12 11 10 15 15 N 1.31515 * 119.99779 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00355 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47061 * 89.99701 * 16 14 12 18 18 H 1.48488 * 109.47272 * 209.99761 * 16 14 12 19 19 H 1.48500 * 109.46992 * 330.00258 * 16 14 12 20 20 C 1.46891 * 111.00445 * 293.29466 * 10 9 6 21 21 C 1.54972 * 110.92416 * 332.29626 * 20 10 9 22 22 C 1.54265 * 104.15838 * 156.29232 * 21 20 10 23 23 C 1.53878 * 106.64424 * 336.44508 * 22 21 20 24 24 C 1.54268 * 106.59613 * 359.97405 * 23 22 21 25 25 H 4.38448 * 5.44420 * 179.97438 * 4 1 2 26 26 H 1.08997 * 109.47375 * 21.37810 * 3 2 1 27 27 H 1.08999 * 109.46781 * 261.37166 * 3 2 1 28 28 H 1.09001 * 109.46722 * 59.99827 * 5 4 3 29 29 H 1.09003 * 109.47454 * 300.00361 * 5 4 3 30 30 H 0.96694 * 114.00628 * 59.99374 * 8 6 5 31 31 H 1.08998 * 109.46978 * 63.56417 * 9 6 5 32 32 H 1.08998 * 109.47295 * 303.56505 * 9 6 5 33 33 H 1.09000 * 109.47663 * 319.55708 * 11 10 9 34 34 H 1.09000 * 109.46973 * 79.56639 * 11 10 9 35 35 H 0.97001 * 120.00103 * 179.97438 * 15 14 12 36 36 H 1.08992 * 110.67849 * 208.98676 * 20 10 9 37 37 H 1.08997 * 110.47211 * 37.63899 * 21 20 10 38 38 H 1.08998 * 110.52908 * 274.97150 * 21 20 10 39 39 H 1.09006 * 110.02904 * 217.13688 * 22 21 20 40 40 H 1.09002 * 110.03406 * 95.75765 * 22 21 20 41 41 H 1.08995 * 110.02997 * 119.26078 * 23 22 21 42 42 H 1.09000 * 110.03444 * 240.64697 * 23 22 21 43 43 H 1.08997 * 110.48345 * 142.28592 * 24 23 22 44 44 H 1.08998 * 110.48698 * 264.80196 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0536 -0.8410 5 6 4.5463 1.1428 -0.9110 6 6 4.9401 2.2982 -1.8332 7 1 4.4647 2.1658 -2.8051 8 8 4.5119 3.5342 -1.2578 9 6 6.4601 2.3164 -2.0073 10 7 6.8457 3.4757 -2.8231 11 6 8.3014 3.6724 -2.8034 12 6 8.6231 5.0847 -3.2193 13 1 7.8251 5.7913 -3.3938 14 6 9.9360 5.4748 -3.3772 15 7 10.9077 4.6145 -3.1644 16 14 10.3348 7.2256 -3.8921 17 1 10.4879 8.0744 -2.6833 18 1 11.6005 7.2371 -4.6685 19 1 9.2329 7.7572 -4.7338 20 6 6.3516 3.3387 -4.1996 21 6 6.2101 1.8458 -4.5908 22 6 5.1642 1.8504 -5.7247 23 6 4.3308 3.1321 -5.5505 24 6 4.8986 3.8625 -4.3159 25 1 -1.0502 -0.0004 0.0001 26 1 3.0098 -0.9561 -0.3746 27 1 3.0092 0.1550 1.0160 28 1 4.9498 0.2097 -1.3043 29 1 4.9487 1.3209 0.0862 30 1 4.8963 3.7181 -0.3899 31 1 6.7799 1.4003 -2.5039 32 1 6.9370 2.3853 -1.0297 33 1 8.6784 3.4956 -1.7961 34 1 8.7718 2.9738 -3.4953 35 1 11.8314 4.8888 -3.2758 36 1 7.0070 3.8597 -4.8974 37 1 5.8513 1.2620 -3.7431 38 1 7.1611 1.4531 -4.9505 39 1 4.5218 0.9734 -5.6437 40 1 5.6638 1.8586 -6.6935 41 1 4.4268 3.7628 -6.4343 42 1 3.2839 2.8774 -5.3857 43 1 4.8934 4.9408 -4.4748 44 1 4.3261 3.6063 -3.4245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251847172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -27.775857 kcal Electronic energy + Delta-G solvation = -22951.304736 eV Core-core repulsion = 19677.858986 eV Total energy + Delta-G solvation = -3273.445750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.51696 -38.10096 -36.13446 -34.50415 -33.39218 -32.43864 -30.32819 -28.26392 -27.75556 -27.32142 -26.05021 -24.16449 -21.60915 -21.42343 -19.71704 -19.10653 -18.62347 -16.87132 -16.69279 -16.18855 -15.97532 -15.80464 -15.14699 -14.77670 -14.55480 -14.31794 -13.75050 -13.39433 -13.01343 -12.64997 -12.46397 -12.40586 -12.21527 -11.96128 -11.47659 -11.10679 -10.89076 -10.86232 -10.84097 -10.70745 -10.64960 -10.55389 -10.51708 -10.15129 -9.98635 -9.85334 -9.72363 -9.54378 -9.48765 -9.16087 -8.40460 -7.13751 -6.00422 -4.01245 2.29975 2.58361 3.34153 3.40050 3.44852 3.68070 4.25270 4.45954 4.68435 4.84525 4.95599 5.06244 5.13672 5.15401 5.16360 5.20965 5.34242 5.35541 5.48256 5.51956 5.66467 5.70192 5.80420 5.95317 6.01966 6.09909 6.16782 6.22524 6.25281 6.37815 6.38954 6.49817 6.72334 6.90914 6.97857 7.03255 7.24903 7.34492 7.37183 7.87789 8.05047 8.15761 8.25476 8.57316 9.08805 9.63345 11.09810 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.004072 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.117861 B = 6874.025291 C = 7447.435326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.169 3.831 4 O -0.370 6.370 5 C 0.028 3.972 6 C 0.105 3.895 7 H 0.116 0.884 8 O -0.535 6.535 9 C 0.020 3.980 10 N -0.513 5.513 11 C 0.193 3.807 12 C -0.500 4.500 13 H 0.065 0.935 14 C 0.054 3.946 15 N -0.902 5.902 16 Si 0.897 3.103 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.091 3.909 21 C -0.167 4.167 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.128 4.128 25 H 0.221 0.779 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.369 0.631 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.022 0.978 34 H -0.003 1.003 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 -10.466 3.342 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.189 4.189 3 C 0.093 3.907 4 O -0.289 6.289 5 C -0.050 4.050 6 C 0.045 3.955 7 H 0.134 0.866 8 O -0.339 6.339 9 C -0.109 4.109 10 N -0.236 5.236 11 C 0.068 3.932 12 C -0.539 4.539 13 H 0.083 0.917 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.018 4.018 21 C -0.206 4.206 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.238 0.762 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.215 0.785 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.227 -9.881 2.896 18.382 hybrid contribution 1.183 -0.182 0.025 1.198 sum -14.044 -10.063 2.922 17.522 Atomic orbital electron populations 1.24952 0.95880 0.99113 0.99807 1.22590 0.93958 1.01301 1.01005 1.19089 0.84751 0.91615 0.95255 1.88046 1.21375 1.51880 1.67639 1.23450 0.80752 1.00283 1.00487 1.22220 0.94221 0.82240 0.96801 0.86620 1.86602 1.71310 1.38339 1.37649 1.22773 0.94237 0.94701 0.99219 1.62065 1.17005 1.35462 1.09035 1.19771 0.80030 0.96900 0.96486 1.21186 0.91705 0.96132 1.44885 0.91720 1.24990 0.96349 0.97563 0.95807 1.69958 0.99440 1.34531 1.50261 0.86513 0.77615 0.84783 0.78616 1.20690 1.21443 1.19801 1.22633 0.95847 0.92500 0.90833 1.23235 0.98816 1.00100 0.98436 1.22027 0.97360 0.97589 0.98710 1.22146 0.98714 0.96564 0.99044 1.22769 0.96376 0.99724 0.97750 0.76211 0.91030 0.90944 0.92449 0.92680 0.78467 0.93939 0.91236 0.95957 0.98561 0.93031 0.89205 0.90924 0.92121 0.92710 0.92333 0.92409 0.92565 0.92061 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.19 -2.14 13.73 -37.12 -0.51 -2.65 16 3 C 0.17 1.73 6.41 34.37 0.22 1.95 16 4 O -0.37 -4.92 10.27 -40.08 -0.41 -5.34 16 5 C 0.03 0.33 5.57 37.15 0.21 0.53 16 6 C 0.10 1.53 1.93 -26.73 -0.05 1.48 16 7 H 0.12 1.82 4.44 -51.93 -0.23 1.59 16 8 O -0.54 -8.58 11.97 -40.08 -0.48 -9.06 16 9 C 0.02 0.33 4.12 -3.82 -0.02 0.31 16 10 N -0.51 -10.60 4.21 -225.65 -0.95 -11.55 16 11 C 0.19 4.88 4.67 -4.97 -0.02 4.86 16 12 C -0.50 -13.96 8.59 -34.44 -0.30 -14.25 16 13 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 14 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 16 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.09 1.75 2.72 -65.68 -0.18 1.57 16 21 C -0.17 -2.70 5.12 -25.03 -0.13 -2.82 16 22 C -0.12 -1.67 6.80 -25.61 -0.17 -1.85 16 23 C -0.13 -1.84 6.80 -25.61 -0.17 -2.02 16 24 C -0.13 -2.22 5.90 -25.07 -0.15 -2.37 16 25 H 0.22 1.24 7.80 -54.08 -0.42 0.82 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.37 4.87 9.05 45.56 0.41 5.29 16 31 H 0.04 0.68 5.75 -51.93 -0.30 0.38 16 32 H 0.07 1.12 7.81 -51.93 -0.41 0.72 16 33 H 0.02 0.60 7.73 -51.93 -0.40 0.19 16 34 H 0.00 -0.10 8.00 -51.93 -0.42 -0.51 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.09 1.99 7.31 -51.93 -0.38 1.61 16 37 H 0.07 1.09 4.17 -51.93 -0.22 0.87 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.61 3.81 -51.93 -0.20 1.41 16 LS Contribution 351.08 15.07 5.29 5.29 Total: -1.00 -31.79 351.08 -7.96 -39.75 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.33 Total: 5.01 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.80 Total: -15.00 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.21 Total: -37.41 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.89 Total: -14.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.79 -7.96 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251847172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.977 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds