Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47507 * 285.55483 * 3 2 1 5 5 C 1.42894 * 114.00385 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47284 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46999 * 55.00094 * 6 5 4 8 8 O 1.42899 * 109.47394 * 294.99920 * 6 5 4 9 9 C 1.53001 * 109.46967 * 174.99685 * 6 5 4 10 10 N 1.46904 * 109.47037 * 186.23255 * 9 6 5 11 11 C 1.46898 * 111.00115 * 158.20041 * 10 9 6 12 12 C 1.50697 * 109.47153 * 195.59426 * 11 10 9 13 13 H 1.08002 * 120.00581 * 5.77233 * 12 11 10 14 14 C 1.37879 * 120.00010 * 185.78230 * 12 11 10 15 15 N 1.31517 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99939 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46916 * 59.99906 * 16 14 12 18 18 H 1.48502 * 109.46896 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47342 * 299.99619 * 16 14 12 20 20 C 1.46900 * 111.00172 * 282.15479 * 10 9 6 21 21 C 1.55235 * 110.46828 * 261.13390 * 20 10 9 22 22 C 1.54885 * 102.58711 * 203.39692 * 21 20 10 23 23 C 1.54267 * 104.31828 * 37.92799 * 22 21 20 24 24 C 1.53879 * 106.59484 * 336.32561 * 23 22 21 25 25 H 4.38447 * 5.44527 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46968 * 165.55752 * 3 2 1 27 27 H 1.09000 * 109.47184 * 45.55616 * 3 2 1 28 28 H 1.09000 * 109.47636 * 60.00132 * 5 4 3 29 29 H 1.09000 * 109.47184 * 300.00113 * 5 4 3 30 30 H 0.96696 * 113.99654 * 300.00126 * 8 6 5 31 31 H 1.09003 * 109.47061 * 66.24152 * 9 6 5 32 32 H 1.08995 * 109.47550 * 306.23486 * 9 6 5 33 33 H 1.09006 * 109.47117 * 315.59080 * 11 10 9 34 34 H 1.08996 * 109.47497 * 75.59181 * 11 10 9 35 35 H 0.96994 * 120.00122 * 180.02562 * 15 14 12 36 36 H 1.09000 * 110.43263 * 23.78299 * 20 10 9 37 37 H 1.08997 * 110.90277 * 85.09898 * 21 20 10 38 38 H 1.09004 * 110.76383 * 321.62113 * 21 20 10 39 39 H 1.09004 * 110.48783 * 279.18606 * 22 21 20 40 40 H 1.08994 * 110.49109 * 156.67638 * 22 21 20 41 41 H 1.09001 * 110.03131 * 95.60768 * 23 22 21 42 42 H 1.08995 * 110.03600 * 216.99561 * 23 22 21 43 43 H 1.09002 * 110.02610 * 119.28391 * 24 23 22 44 44 H 1.08998 * 110.03206 * 240.66216 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1225 -0.3604 1.2979 5 6 4.5470 -0.3895 1.4067 6 6 4.9417 -0.7864 2.8307 7 1 4.4667 -1.7329 3.0889 8 8 4.5135 0.2262 3.7435 9 6 6.4618 -0.9390 2.9147 10 7 6.8289 -1.4633 4.2370 11 6 8.1518 -2.1010 4.2017 12 6 8.3341 -2.9482 5.4345 13 1 7.5136 -3.0823 6.1239 14 6 9.5485 -3.5522 5.6826 15 7 10.5476 -3.3893 4.8431 16 14 9.7746 -4.6019 7.2112 17 1 8.8111 -5.7316 7.1828 18 1 11.1604 -5.1346 7.2453 19 1 9.5319 -3.7746 8.4202 20 6 6.7815 -0.4051 5.2547 21 6 8.2055 0.1495 5.5279 22 6 8.0697 0.7410 6.9528 23 6 7.1511 -0.2532 7.6928 24 6 6.3321 -0.9820 6.6130 25 1 -1.0500 0.0001 0.0002 26 1 3.0088 0.9960 -0.2563 27 1 3.0096 -0.7188 -0.7337 28 1 4.9490 0.5980 1.1798 29 1 4.9505 -1.1167 0.7022 30 1 4.8975 1.0971 3.5732 31 1 6.9333 0.0324 2.7654 32 1 6.8008 -1.6300 2.1429 33 1 8.2288 -2.7294 3.3144 34 1 8.9247 -1.3330 4.1712 35 1 11.4018 -3.8145 5.0174 36 1 6.1123 0.3957 4.9401 37 1 8.4643 0.9274 4.8096 38 1 8.9425 -0.6534 5.5116 39 1 7.6098 1.7286 6.9137 40 1 9.0440 0.7941 7.4384 41 1 7.7514 -0.9699 8.2533 42 1 6.4855 0.2846 8.3677 43 1 6.5348 -2.0523 6.6496 44 1 5.2683 -0.7984 6.7639 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251847173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -26.425660 kcal Electronic energy + Delta-G solvation = -22812.823825 eV Core-core repulsion = 19539.436623 eV Total energy + Delta-G solvation = -3273.387201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.09700 -38.14002 -36.47094 -34.17245 -33.39940 -32.46581 -30.33841 -27.96521 -27.68788 -27.12661 -26.15493 -23.81852 -21.88872 -21.31903 -19.59099 -18.62932 -18.53921 -17.03432 -16.55680 -16.34333 -16.01717 -15.27963 -15.18620 -14.88684 -14.52051 -14.29917 -13.89682 -13.13481 -12.87163 -12.79909 -12.40877 -12.32923 -12.21616 -11.68431 -11.37433 -10.95224 -10.85785 -10.85349 -10.69832 -10.63619 -10.48378 -10.42960 -10.26446 -10.19586 -10.03961 -9.92937 -9.71145 -9.45786 -8.98682 -8.78592 -8.37329 -7.10259 -6.00156 -3.99614 2.30710 2.59144 3.35065 3.39048 3.42421 3.68762 4.25891 4.45907 4.62366 4.85951 4.97768 5.08203 5.18236 5.25651 5.34681 5.41027 5.43623 5.50764 5.53665 5.65465 5.68945 5.79143 6.04483 6.21153 6.30345 6.33046 6.38766 6.41900 6.56673 6.62630 6.70474 6.82117 6.98490 7.09397 7.11271 7.19466 7.35299 7.42233 7.54034 7.88757 7.98692 8.17541 8.26864 8.59441 9.10021 9.63987 11.10118 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021587 B = 0.003930 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.765777 B = 7122.441620 C = 7725.195071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.189 4.189 3 C 0.169 3.831 4 O -0.371 6.371 5 C 0.031 3.969 6 C 0.117 3.883 7 H 0.113 0.887 8 O -0.543 6.543 9 C 0.028 3.972 10 N -0.525 5.525 11 C 0.182 3.818 12 C -0.498 4.498 13 H 0.072 0.928 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.276 1.276 20 C 0.095 3.905 21 C -0.168 4.168 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.221 0.779 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.363 0.637 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.119 0.881 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 9.259 -7.055 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.189 4.189 3 C 0.093 3.907 4 O -0.290 6.290 5 C -0.047 4.047 6 C 0.057 3.943 7 H 0.131 0.869 8 O -0.347 6.347 9 C -0.102 4.102 10 N -0.248 5.248 11 C 0.057 3.943 12 C -0.536 4.536 13 H 0.090 0.910 14 C -0.146 4.146 15 N -0.542 5.542 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.014 4.014 21 C -0.206 4.206 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.153 4.153 25 H 0.238 0.762 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.209 0.791 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.137 0.863 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.811 8.282 -6.555 15.845 hybrid contribution 1.230 0.526 -0.008 1.337 sum -10.582 8.808 -6.563 15.252 Atomic orbital electron populations 1.24948 0.95885 1.00799 0.98098 1.22592 0.93973 1.00563 1.01765 1.19084 0.84749 1.00160 0.86686 1.88050 1.21403 1.90328 1.29222 1.23400 0.80734 1.00631 0.99885 1.22044 0.94414 0.92718 0.85089 0.86904 1.86702 1.72130 1.20436 1.55452 1.22581 0.93829 0.98842 0.94908 1.62096 1.32974 1.27898 1.01832 1.20043 0.83223 0.93481 0.97559 1.21295 0.96910 1.28353 1.07044 0.91002 1.24958 0.96048 0.96864 0.96687 1.69939 1.02859 1.44847 1.36516 0.86676 0.76951 0.80895 0.83650 1.20235 1.21547 1.20200 1.22552 0.94439 0.91976 0.92427 1.23506 1.01346 1.00924 0.94811 1.22171 0.98751 0.97432 0.97000 1.22033 0.97796 0.97846 0.97905 1.22306 0.97162 1.02776 0.93027 0.76207 0.91053 0.90918 0.93011 0.92022 0.79072 0.95372 0.90594 0.96334 0.96854 0.93025 0.90843 0.94199 0.86299 0.93340 0.92834 0.92248 0.93530 0.88861 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 19.25 29.55 0.57 -1.19 16 2 C -0.19 -2.17 13.73 -37.12 -0.51 -2.68 16 3 C 0.17 1.75 6.41 34.37 0.22 1.97 16 4 O -0.37 -4.99 10.27 -40.08 -0.41 -5.40 16 5 C 0.03 0.36 5.57 37.16 0.21 0.57 16 6 C 0.12 1.71 3.47 -26.73 -0.09 1.62 16 7 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 8 O -0.54 -8.19 10.96 -40.08 -0.44 -8.63 16 9 C 0.03 0.46 4.75 -3.82 -0.02 0.44 16 10 N -0.53 -10.70 4.30 -225.88 -0.97 -11.67 16 11 C 0.18 4.43 4.25 -4.98 -0.02 4.41 16 12 C -0.50 -13.18 7.35 -34.44 -0.25 -13.44 16 13 H 0.07 1.91 4.95 -52.49 -0.26 1.65 16 14 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C 0.09 1.80 2.49 -65.87 -0.16 1.63 16 21 C -0.17 -3.27 5.35 -24.55 -0.13 -3.40 16 22 C -0.12 -2.00 6.82 -25.07 -0.17 -2.17 16 23 C -0.12 -2.10 6.80 -25.61 -0.17 -2.28 16 24 C -0.12 -2.24 6.11 -25.61 -0.16 -2.39 16 25 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.36 4.22 8.49 45.56 0.39 4.61 16 31 H 0.03 0.43 7.97 -51.93 -0.41 0.02 16 32 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 33 H 0.02 0.49 7.67 -51.93 -0.40 0.09 16 34 H 0.01 0.36 5.44 -51.93 -0.28 0.07 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.28 5.00 -51.93 -0.26 1.02 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 2.82 4.54 -51.93 -0.24 2.58 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.07 4.81 -51.93 -0.25 1.82 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -30.61 349.64 -7.95 -38.56 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.31 Total: 6.18 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -0.79 Total: -15.51 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.24 Total: -36.79 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.85 Total: -14.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.61 -7.95 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251847173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.131 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds