Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47491 * 2 1 4 4 C 1.34968 * 117.00473 * 180.02562 * 3 2 1 5 5 O 1.21716 * 119.99621 * 359.97438 * 4 3 2 6 6 C 1.41184 * 120.00364 * 180.02562 * 4 3 2 7 7 C 1.33692 * 118.25197 * 185.18012 * 6 4 3 8 8 N 1.36586 * 118.25035 * 0.35097 * 7 6 4 9 9 C 1.46502 * 120.00032 * 124.75670 * 8 7 6 10 10 H 1.08999 * 109.46808 * 30.39332 * 9 8 7 11 11 C 1.50691 * 109.46981 * 150.39659 * 9 8 7 12 12 H 1.07994 * 120.00569 * 5.17750 * 11 9 8 13 13 C 1.37878 * 119.99566 * 185.18074 * 11 9 8 14 14 N 1.31523 * 119.99919 * 191.63680 * 13 11 9 15 15 Si 1.86800 * 120.00343 * 11.63664 * 13 11 9 16 16 H 1.48494 * 109.46919 * 88.91744 * 15 13 11 17 17 H 1.48500 * 109.47068 * 208.91827 * 15 13 11 18 18 H 1.48500 * 109.46875 * 328.91676 * 15 13 11 19 19 C 1.52999 * 109.46900 * 270.39774 * 9 8 7 20 20 C 1.53003 * 109.47613 * 65.94510 * 19 9 8 21 21 C 1.50127 * 123.50127 * 180.63699 * 7 6 4 22 22 C 1.52980 * 110.12045 * 342.61591 * 21 7 6 23 23 C 1.53326 * 108.60008 * 50.07587 * 22 21 7 24 24 C 1.50125 * 118.24618 * 5.15340 * 6 4 3 25 25 H 1.09000 * 109.46960 * 60.00114 * 1 2 3 26 26 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47583 * 300.00185 * 1 2 3 28 28 H 1.09005 * 109.47162 * 239.99312 * 2 1 3 29 29 H 1.09000 * 109.46960 * 119.99886 * 2 1 3 30 30 H 0.96999 * 119.99615 * 304.75570 * 8 7 6 31 31 H 0.97000 * 119.99800 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.47120 * 185.94701 * 19 9 8 33 33 H 1.09001 * 109.47023 * 305.94639 * 19 9 8 34 34 H 1.08998 * 109.46934 * 301.06816 * 20 19 9 35 35 H 1.08999 * 109.46860 * 61.06260 * 20 19 9 36 36 H 1.09001 * 109.47151 * 181.06301 * 20 19 9 37 37 H 1.08998 * 109.36464 * 102.81623 * 21 7 6 38 38 H 1.09002 * 109.36075 * 222.41810 * 21 7 6 39 39 H 1.09004 * 109.59446 * 290.35444 * 22 21 7 40 40 H 1.08996 * 109.62228 * 169.82376 * 22 21 7 41 41 H 1.09006 * 109.61630 * 171.67588 * 23 22 21 42 42 H 1.09000 * 109.76598 * 51.22883 * 23 22 21 43 43 H 1.09002 * 109.36511 * 282.81516 * 24 6 4 44 44 H 1.08999 * 109.36333 * 42.55677 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3444 1.5241 -0.0005 5 8 4.0858 0.5588 -0.0005 6 6 3.8841 2.8287 0.0000 7 6 5.2097 2.9652 -0.1069 8 7 5.9691 1.8353 -0.2181 9 6 6.8863 1.6776 -1.3495 10 1 7.2434 2.6573 -1.6669 11 6 8.0579 0.8271 -0.9315 12 1 8.0736 0.3734 0.0484 13 6 9.1100 0.6281 -1.8002 14 7 10.0169 -0.2871 -1.5360 15 14 9.2473 1.6582 -3.3524 16 1 10.0170 2.8939 -3.0599 17 1 9.9461 0.8772 -4.4046 18 1 7.8880 2.0222 -3.8268 19 6 6.1534 1.0015 -2.5098 20 6 5.0561 1.9316 -3.0314 21 6 5.9088 4.2938 -0.1050 22 6 4.9098 5.4144 -0.3989 23 6 3.7019 5.2492 0.5310 24 6 2.9386 3.9886 0.1199 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.9010 1.1374 0.4520 31 1 10.7572 -0.4268 -2.1469 32 1 6.8605 0.7885 -3.3116 33 1 5.7057 0.0700 -2.1633 34 1 4.3595 2.1597 -2.2247 35 1 5.5057 2.8554 -3.3953 36 1 4.5216 1.4422 -3.8456 37 1 6.3632 4.4616 0.8714 38 1 6.6868 4.2938 -0.8684 39 1 4.5838 5.3506 -1.4371 40 1 5.3806 6.3809 -0.2192 41 1 3.0494 6.1178 0.4411 42 1 4.0413 5.1516 1.5622 43 1 2.4511 4.1583 -0.8401 44 1 2.1841 3.7634 0.8736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -72.043924 kcal Electronic energy + Delta-G solvation = -23869.382715 eV Core-core repulsion = 20594.017357 eV Total energy + Delta-G solvation = -3275.365358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48879 -38.47651 -36.20416 -35.65976 -32.73441 -31.85222 -31.63969 -30.66928 -28.94228 -26.71108 -24.24157 -23.28032 -22.52573 -21.84405 -20.79048 -19.86888 -18.41446 -17.44974 -16.57562 -16.26555 -15.93942 -15.38525 -14.68570 -14.13020 -13.97420 -13.77016 -13.65921 -13.49158 -13.02318 -12.91314 -12.78073 -12.50342 -12.27400 -12.20709 -11.87482 -11.75581 -11.61719 -11.35417 -10.98283 -10.87960 -10.74548 -10.68802 -10.60287 -10.43013 -10.09921 -9.95064 -9.70418 -9.42171 -9.15540 -8.62613 -8.52563 -6.95393 -6.16533 -4.14323 1.77806 3.22799 3.32319 3.34290 3.37181 3.63322 4.34112 4.49913 4.95171 5.04880 5.06291 5.11357 5.14170 5.14979 5.37442 5.46916 5.51598 5.63800 5.75625 5.81901 5.85797 5.95685 5.99194 5.99637 6.02631 6.09714 6.17950 6.18885 6.22264 6.28485 6.47218 6.50863 6.62308 6.73665 6.88001 6.99917 7.04371 7.09758 7.44775 7.56284 8.09724 8.51547 8.54169 8.83939 8.94307 9.46388 10.96469 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.006342 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.203529 B = 4414.005523 C = 5366.571145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.364 6.364 4 C 0.503 3.497 5 O -0.515 6.515 6 C -0.302 4.302 7 C 0.288 3.712 8 N -0.715 5.715 9 C 0.258 3.742 10 H 0.027 0.973 11 C -0.529 4.529 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.891 5.891 15 Si 0.858 3.142 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.245 1.245 19 C -0.134 4.134 20 C -0.156 4.156 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.043 4.043 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 9.122 1.943 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.354 3.646 5 O -0.406 6.406 6 C -0.311 4.311 7 C 0.175 3.825 8 N -0.348 5.348 9 C 0.154 3.846 10 H 0.044 0.956 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.125 4.125 14 N -0.528 5.528 15 Si 0.685 3.315 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.169 1.169 19 C -0.173 4.173 20 C -0.214 4.214 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.081 4.081 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.250 0.750 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.941 8.688 1.719 17.369 hybrid contribution 0.271 -0.120 -0.625 0.691 sum -14.669 8.568 1.094 17.024 Atomic orbital electron populations 1.21770 0.93451 1.02347 1.03007 1.22401 0.94607 0.82169 1.01977 1.86184 1.25641 1.30606 1.85758 1.19654 0.79714 0.90685 0.74538 1.90835 1.58852 1.43199 1.47708 1.18733 0.93056 0.92099 1.27167 1.19361 0.89022 0.89480 0.84621 1.44903 1.43843 1.18301 1.27743 1.18909 0.87417 0.95502 0.82726 0.95577 1.21072 1.01425 1.31083 1.03110 0.90522 1.24843 0.95614 0.94498 0.97516 1.69941 1.13896 1.30972 1.37982 0.87341 0.79383 0.81088 0.83690 1.20424 1.21230 1.16939 1.22378 0.96925 0.99191 0.98818 1.21957 0.99740 0.99411 1.00259 1.20964 0.98662 0.91404 1.03683 1.21568 0.95866 0.97626 1.00281 1.21605 0.96989 0.97635 0.99451 1.19870 0.95850 0.91422 1.00979 0.91831 0.90884 0.91874 0.92075 0.92208 0.74956 0.92517 0.92187 0.92069 0.92294 0.94192 0.94615 0.89148 0.89506 0.91483 0.91609 0.91945 0.91920 0.91982 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.15 0.38 -1.10 16 2 C 0.06 0.87 6.10 37.15 0.23 1.10 16 3 O -0.36 -5.85 9.32 -41.23 -0.38 -6.23 16 4 C 0.50 9.17 6.68 31.85 0.21 9.38 16 5 O -0.52 -10.85 13.17 -19.43 -0.26 -11.11 16 6 C -0.30 -4.96 4.52 -105.38 -0.48 -5.44 16 7 C 0.29 4.98 4.69 -82.35 -0.39 4.60 16 8 N -0.71 -14.82 3.21 -52.02 -0.17 -14.99 16 9 C 0.26 5.96 1.86 -69.09 -0.13 5.83 16 10 H 0.03 0.60 5.22 -51.93 -0.27 0.33 16 11 C -0.53 -14.53 9.20 -34.44 -0.32 -14.84 16 12 H 0.08 2.32 8.01 -52.49 -0.42 1.89 16 13 C 0.08 2.20 5.37 -17.82 -0.10 2.11 16 14 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 15 Si 0.86 20.47 25.79 -169.99 -4.38 16.09 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.25 -5.48 5.25 56.52 0.30 -5.18 16 19 C -0.13 -3.04 4.84 -26.73 -0.13 -3.17 16 20 C -0.16 -3.04 9.52 37.16 0.35 -2.69 16 21 C -0.11 -1.58 5.85 -28.17 -0.16 -1.75 16 22 C -0.12 -1.34 5.98 -26.57 -0.16 -1.50 16 23 C -0.12 -1.31 5.98 -26.57 -0.16 -1.47 16 24 C -0.04 -0.57 5.34 -28.16 -0.15 -0.72 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.41 9.08 6.81 -40.82 -0.28 8.81 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.40 4.60 -51.93 -0.24 1.16 16 33 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.13 4.39 -51.93 -0.23 0.90 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.36 6.51 -51.93 -0.34 1.02 16 39 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -30.16 336.83 -7.67 -37.83 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.34 Total: 8.98 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.99 Total: -9.65 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.61 Total: -40.99 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.64 Total: -17.34 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.38 Total: 16.09 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.16 -7.67 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.210 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds