Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47482 * 2 1 4 4 H 1.08998 * 109.47621 * 305.44815 * 3 2 1 5 5 C 1.50702 * 109.47722 * 185.44744 * 3 2 1 6 6 H 1.08001 * 120.00202 * 240.00569 * 5 3 2 7 7 C 1.37877 * 119.99664 * 59.72183 * 5 3 2 8 8 N 1.31516 * 120.00242 * 0.28323 * 7 5 3 9 9 Si 1.86802 * 120.00004 * 180.28001 * 7 5 3 10 10 H 1.48496 * 109.47211 * 60.00450 * 9 7 5 11 11 H 1.48500 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46970 * 300.00031 * 9 7 5 13 13 N 1.46902 * 109.47113 * 65.45213 * 3 2 1 14 14 C 1.46898 * 110.99974 * 208.64259 * 13 3 2 15 15 C 1.55926 * 115.92692 * 60.76916 * 14 13 3 16 16 C 1.58474 * 103.90662 * 160.57300 * 15 14 13 17 17 C 1.55919 * 103.90856 * 359.97438 * 16 15 14 18 18 C 1.50701 * 115.92440 * 199.42668 * 17 16 15 19 19 O 1.20828 * 119.99417 * 117.94607 * 18 17 16 20 20 O 1.34221 * 120.00074 * 297.94433 * 18 17 16 21 21 C 1.45205 * 117.00114 * 179.97438 * 20 18 17 22 22 C 1.55933 * 104.49665 * 70.54984 * 17 16 15 23 23 C 1.54586 * 104.64115 * 288.91186 * 22 17 16 24 24 C 1.56953 * 101.41318 * 326.25595 * 17 16 15 25 25 H 1.08998 * 109.47115 * 302.86929 * 1 2 3 26 26 H 1.08999 * 109.47157 * 62.86445 * 1 2 3 27 27 H 1.08996 * 109.47533 * 182.86794 * 1 2 3 28 28 H 1.09003 * 109.47057 * 240.00093 * 2 1 3 29 29 H 1.09003 * 109.47326 * 120.00706 * 2 1 3 30 30 H 0.97000 * 120.00176 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99584 * 332.59060 * 13 3 2 32 32 H 1.08999 * 110.40214 * 278.82539 * 15 14 13 33 33 H 1.09003 * 110.39884 * 41.24054 * 15 14 13 34 34 H 1.09005 * 110.52521 * 241.56132 * 16 15 14 35 35 H 1.08998 * 110.98608 * 118.66340 * 16 15 14 36 36 H 1.09000 * 109.47121 * 300.00115 * 21 20 18 37 37 H 1.09003 * 109.46696 * 59.99891 * 21 20 18 38 38 H 1.08994 * 109.47276 * 179.97438 * 21 20 18 39 39 H 1.08998 * 110.40266 * 170.12804 * 22 17 16 40 40 H 1.08997 * 110.40360 * 47.69884 * 22 17 16 41 41 H 1.09002 * 110.40262 * 241.20801 * 23 22 17 42 42 H 1.09004 * 110.40010 * 118.79232 * 23 22 17 43 43 H 1.09006 * 112.70247 * 296.79210 * 24 17 16 44 44 H 1.08994 * 111.34618 * 170.28169 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5993 1.9837 -0.8371 5 6 3.5410 1.4446 -0.1349 6 1 4.1520 1.8871 0.6380 7 6 4.1344 0.8765 -1.2422 8 7 3.3904 0.3377 -2.1833 9 14 5.9953 0.8722 -1.4057 10 1 6.5910 0.1358 -0.2621 11 1 6.3789 0.2074 -2.6769 12 1 6.4951 2.2706 -1.4085 13 7 1.6608 2.0959 1.2598 14 6 1.4966 3.5437 1.0732 15 6 0.3984 3.9798 0.0559 16 6 0.1009 5.4883 0.4398 17 6 1.0579 5.7655 1.6391 18 6 0.7008 6.9437 2.5082 19 8 0.4362 6.7753 3.6751 20 8 0.6769 8.1800 1.9862 21 6 0.3239 9.2671 2.8817 22 6 2.4817 5.7938 1.0039 23 6 2.7719 4.3223 0.6295 24 6 1.0837 4.3645 2.3462 25 1 -0.3633 0.5577 0.8631 26 1 -0.3633 0.4687 -0.9145 27 1 -0.3634 -1.0263 0.0514 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8079 -0.0617 -2.9625 31 1 0.8235 1.6835 1.6433 32 1 0.7785 3.9170 -0.9637 33 1 -0.4918 3.3609 0.1692 34 1 -0.9380 5.6065 0.7479 35 1 0.3298 6.1551 -0.3915 36 1 -0.6761 9.0985 3.2814 37 1 1.0406 9.3093 3.7019 38 1 0.3427 10.2094 2.3344 39 1 3.2135 6.1531 1.7274 40 1 2.4877 6.4210 0.1124 41 1 3.6464 3.9583 1.1688 42 1 2.9206 4.2262 -0.4461 43 1 0.1061 4.0667 2.7256 44 1 1.8474 4.3260 3.1228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -87.557494 kcal Electronic energy + Delta-G solvation = -23548.458797 eV Core-core repulsion = 20272.420720 eV Total energy + Delta-G solvation = -3276.038077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87935 -39.34899 -36.45524 -35.67527 -32.20074 -30.98208 -30.01120 -28.69883 -27.59820 -27.13086 -25.77075 -22.83253 -22.43097 -21.92287 -19.80687 -19.28118 -18.44237 -17.02290 -16.69417 -16.39144 -16.07666 -14.98830 -14.68414 -14.59822 -14.56946 -13.74032 -13.36359 -13.23322 -12.78251 -12.66351 -12.26609 -12.14762 -12.11265 -11.73499 -11.44804 -11.24986 -11.16872 -10.98080 -10.90125 -10.88458 -10.75843 -10.69331 -10.60246 -10.24182 -10.06506 -9.91115 -9.73895 -9.62973 -9.40686 -8.98216 -8.32025 -7.23224 -5.94610 -3.97319 2.17599 2.66463 3.34930 3.39600 3.42989 4.40377 4.47206 4.68062 4.70962 4.92630 4.95731 5.02624 5.19681 5.34727 5.36571 5.46403 5.51384 5.58586 5.64676 5.76313 5.87057 5.97547 6.14478 6.15139 6.16729 6.18837 6.24823 6.34024 6.35208 6.40586 6.55581 6.59911 6.81393 6.84507 6.97195 7.09888 7.18306 7.53587 7.75684 7.79248 7.94494 8.33015 8.42078 8.75293 9.09625 9.66731 11.10777 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.004917 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.389048 B = 5692.715672 C = 6413.881869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.220 3.780 4 H 0.011 0.989 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.658 5.658 14 C 0.121 3.879 15 C -0.147 4.147 16 C -0.096 4.096 17 C -0.087 4.087 18 C 0.494 3.506 19 O -0.506 6.506 20 O -0.356 6.356 21 C 0.034 3.966 22 C -0.102 4.102 23 C -0.096 4.096 24 C -0.087 4.087 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.322 0.678 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 12.463 5.097 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.113 3.887 4 H 0.029 0.971 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.287 5.287 14 C 0.028 3.972 15 C -0.187 4.187 16 C -0.134 4.134 17 C -0.088 4.088 18 C 0.337 3.663 19 O -0.393 6.393 20 O -0.272 6.272 21 C -0.060 4.060 22 C -0.140 4.140 23 C -0.134 4.134 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.072 12.362 5.496 14.829 hybrid contribution 0.030 0.196 -0.478 0.517 sum -6.043 12.558 5.018 14.812 Atomic orbital electron populations 1.21888 0.99662 0.99499 0.99713 1.21823 0.91188 1.00622 1.03153 1.19161 0.95512 0.89660 0.84395 0.97110 1.21178 0.91127 1.35914 1.04253 0.91995 1.24927 0.97778 0.95793 0.95999 1.69854 1.34642 1.39540 1.09734 0.86674 0.86177 0.78121 0.77079 1.20408 1.21596 1.20441 1.60547 1.37489 0.99160 1.31522 1.22814 0.93531 0.89452 0.91401 1.23922 0.99705 0.93717 1.01360 1.23132 0.97270 0.97725 0.95286 1.22512 0.99657 0.90649 0.96019 1.23061 0.72846 0.83428 0.86933 1.90644 1.44812 1.85785 1.18096 1.86542 1.80504 1.16567 1.43593 1.23247 1.00944 0.87627 0.94183 1.22655 0.92270 0.99302 0.99797 1.22486 0.98047 0.90553 1.02302 1.23362 1.01670 0.89982 0.97452 0.94645 0.93871 0.94472 0.88134 0.94127 0.93128 0.85927 0.90746 0.92122 0.92103 0.90758 0.92052 0.91993 0.88216 0.91916 0.90995 0.90453 0.90567 0.91233 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.80 37.15 0.36 -2.44 16 2 C -0.13 -2.93 5.33 -26.74 -0.14 -3.07 16 3 C 0.22 5.10 1.80 -68.87 -0.12 4.97 16 4 H 0.01 0.28 6.47 -51.93 -0.34 -0.05 16 5 C -0.49 -12.61 7.59 -34.44 -0.26 -12.87 16 6 H 0.06 1.64 7.08 -52.49 -0.37 1.27 16 7 C 0.06 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.66 11.28 55.43 0.63 -24.03 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.66 -13.18 6.46 -89.05 -0.58 -13.76 16 14 C 0.12 2.12 1.33 -126.34 -0.17 1.95 16 15 C -0.15 -2.35 5.35 -22.14 -0.12 -2.47 16 16 C -0.10 -1.31 6.06 -22.15 -0.13 -1.44 16 17 C -0.09 -1.26 1.37 -150.39 -0.21 -1.46 16 18 C 0.49 7.23 7.33 36.01 0.26 7.49 16 19 O -0.51 -8.49 16.26 -18.75 -0.30 -8.79 16 20 O -0.36 -4.51 10.56 -39.23 -0.41 -4.92 16 21 C 0.03 0.31 10.56 101.05 1.07 1.38 16 22 C -0.10 -1.49 5.86 -24.33 -0.14 -1.63 16 23 C -0.10 -1.70 4.55 -24.36 -0.11 -1.81 16 24 C -0.09 -1.37 5.59 -22.43 -0.13 -1.50 16 25 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 2.58 5.93 -51.93 -0.31 2.27 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.32 6.01 6.54 -39.29 -0.26 5.75 16 32 H 0.07 1.30 7.21 -51.93 -0.37 0.92 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.94 7.82 -51.93 -0.41 0.53 16 36 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 41 H 0.08 1.49 7.45 -51.93 -0.39 1.11 16 42 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -28.16 341.57 -7.84 -36.00 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.37 Total: 5.93 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 0.07 Total: -11.52 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.05 Total: -37.79 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.72 Total: -13.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.16 -7.84 -36.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.554 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds