Wall clock time and date at job start Tue Mar 31 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47357 * 2 1 4 4 H 1.09005 * 109.47138 * 55.13133 * 3 2 1 5 5 C 1.50699 * 109.47396 * 175.13012 * 3 2 1 6 6 H 1.08001 * 120.00268 * 119.99823 * 5 3 2 7 7 C 1.37879 * 120.00266 * 300.00376 * 5 3 2 8 8 N 1.31512 * 119.99469 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47044 * 119.99695 * 9 7 5 12 12 H 1.48497 * 109.46887 * 239.99555 * 9 7 5 13 13 N 1.46900 * 109.47566 * 295.13207 * 3 2 1 14 14 C 1.46895 * 111.00706 * 152.45642 * 13 3 2 15 15 C 1.55920 * 115.92235 * 63.02538 * 14 13 3 16 16 C 1.54583 * 104.64556 * 160.84525 * 15 14 13 17 17 C 1.55925 * 104.64189 * 0.02562 * 16 15 14 18 18 C 1.50700 * 115.91943 * 199.16042 * 17 16 15 19 19 O 1.20828 * 120.00141 * 241.00964 * 18 17 16 20 20 O 1.34229 * 119.99820 * 61.01481 * 18 17 16 21 21 C 1.45209 * 116.99907 * 179.97438 * 20 18 17 22 22 C 1.55921 * 104.49873 * 70.27655 * 17 16 15 23 23 C 1.54581 * 104.64875 * 289.72240 * 22 17 16 24 24 C 1.56948 * 116.86860 * 181.49318 * 14 13 3 25 25 H 1.09002 * 109.46862 * 306.28436 * 1 2 3 26 26 H 1.09001 * 109.47006 * 66.28103 * 1 2 3 27 27 H 1.09002 * 109.47215 * 186.28542 * 1 2 3 28 28 H 1.08998 * 109.47374 * 240.00023 * 2 1 3 29 29 H 1.09000 * 109.47221 * 120.00209 * 2 1 3 30 30 H 0.97004 * 120.00019 * 180.02562 * 8 7 5 31 31 H 1.00907 * 110.99681 * 28.50035 * 13 3 2 32 32 H 1.08999 * 110.40431 * 42.05018 * 15 14 13 33 33 H 1.09008 * 110.40252 * 279.63336 * 15 14 13 34 34 H 1.08994 * 110.40177 * 118.79023 * 16 15 14 35 35 H 1.08996 * 110.39939 * 241.20922 * 16 15 14 36 36 H 1.08994 * 109.47131 * 300.00336 * 21 20 18 37 37 H 1.09003 * 109.46680 * 60.00301 * 21 20 18 38 38 H 1.08995 * 109.47085 * 179.97438 * 21 20 18 39 39 H 1.09004 * 110.40254 * 48.51830 * 22 17 16 40 40 H 1.08998 * 110.40222 * 170.92863 * 22 17 16 41 41 H 1.08996 * 110.39957 * 118.78843 * 23 22 17 42 42 H 1.08997 * 110.39897 * 241.09184 * 23 22 17 43 43 H 1.08997 * 112.02784 * 63.25483 * 24 14 13 44 44 H 1.09003 * 112.02241 * 296.73845 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6072 1.9809 0.8432 5 6 3.5422 1.4441 0.1206 6 1 4.1459 1.8893 -0.6565 7 6 4.1460 0.8773 1.2230 8 7 3.4109 0.3357 2.1694 9 14 6.0080 0.8788 1.3721 10 1 6.5993 1.5439 0.1833 11 1 6.4057 1.6136 2.5999 12 1 6.4993 -0.5203 1.4516 13 7 1.6488 2.1003 -1.2538 14 6 1.5117 3.5508 -1.0670 15 6 2.8114 4.3119 -0.6638 16 6 2.5237 5.7897 -1.0145 17 6 1.0769 5.7824 -1.5959 18 6 0.6942 6.9810 -2.4252 19 8 -0.2243 7.6861 -2.0801 20 8 1.3736 7.2653 -3.5474 21 6 0.9494 8.4346 -4.2965 22 6 0.1641 5.4837 -0.3676 23 6 0.4518 4.0060 -0.0168 24 6 1.0612 4.3875 -2.3161 25 1 -0.3633 0.6082 0.8284 26 1 -0.3633 0.4134 -0.9409 27 1 -0.3634 -1.0215 0.1125 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8356 -0.0628 2.9452 31 1 0.7980 1.7010 -1.6214 32 1 3.6613 3.9435 -1.2384 33 1 2.9988 4.2045 0.4047 34 1 2.5696 6.4087 -0.1185 35 1 3.2321 6.1478 -1.7615 36 1 -0.0884 8.3112 -4.6058 37 1 1.0383 9.3207 -3.6679 38 1 1.5803 8.5501 -5.1778 39 1 0.4284 6.1312 0.4686 40 1 -0.8850 5.6139 -0.6332 41 1 0.8576 3.9269 0.9917 42 1 -0.4563 3.4101 -0.1081 43 1 0.0617 4.1128 -2.6532 44 1 1.7890 4.3369 -3.1260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:38 Heat of formation + Delta-G solvation = -89.137957 kcal Electronic energy + Delta-G solvation = -23578.719773 eV Core-core repulsion = 20302.613162 eV Total energy + Delta-G solvation = -3276.106611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93031 -39.41829 -36.48091 -35.67719 -32.18862 -30.95574 -30.18118 -28.78726 -27.54351 -27.14178 -25.82164 -22.82705 -22.45025 -21.80374 -19.71736 -19.50368 -18.15269 -17.27679 -16.73284 -16.25720 -16.09501 -15.03320 -14.71953 -14.60073 -14.57724 -13.77352 -13.41610 -13.27057 -12.79642 -12.50167 -12.30557 -12.21437 -12.05608 -11.71684 -11.43518 -11.26808 -11.16314 -10.96424 -10.93698 -10.87172 -10.77328 -10.70041 -10.58205 -10.29564 -10.05348 -9.92942 -9.72623 -9.61267 -9.41151 -8.96115 -8.33502 -7.23994 -5.95460 -3.97977 2.16029 2.66696 3.31661 3.40473 3.44814 4.43494 4.49976 4.66033 4.71014 4.94384 4.97642 5.03785 5.15238 5.34632 5.36007 5.54386 5.55521 5.61208 5.69323 5.75345 5.88071 5.99262 6.13925 6.15911 6.16478 6.21360 6.25983 6.29150 6.35668 6.40249 6.58091 6.61313 6.81792 6.83906 6.97154 7.10019 7.18461 7.53427 7.75597 7.78126 7.94065 8.31692 8.40734 8.74367 9.09634 9.66211 11.10139 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021999 B = 0.004992 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.505008 B = 5607.183198 C = 6307.081066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.011 0.989 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.657 5.657 14 C 0.124 3.876 15 C -0.095 4.095 16 C -0.104 4.104 17 C -0.087 4.087 18 C 0.496 3.504 19 O -0.511 6.511 20 O -0.353 6.353 21 C 0.034 3.966 22 C -0.089 4.089 23 C -0.151 4.151 24 C -0.097 4.097 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.322 0.678 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 10.595 -8.470 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.029 0.971 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.286 5.286 14 C 0.031 3.969 15 C -0.133 4.133 16 C -0.142 4.142 17 C -0.089 4.089 18 C 0.340 3.660 19 O -0.398 6.398 20 O -0.269 6.269 21 C -0.060 4.060 22 C -0.127 4.127 23 C -0.191 4.191 24 C -0.135 4.135 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.728 10.743 -8.445 14.459 hybrid contribution -0.040 0.258 0.671 0.720 sum -4.767 11.001 -7.773 14.289 Atomic orbital electron populations 1.21890 0.99663 0.99731 0.99497 1.21810 0.91167 1.00565 1.03145 1.19192 0.95517 0.89616 0.84482 0.97114 1.21254 0.91067 1.35715 1.04337 0.91830 1.24935 0.97827 0.95828 0.95977 1.69878 1.34527 1.39600 1.09727 0.86564 0.86209 0.77565 0.77814 1.19769 1.21353 1.21280 1.60526 1.36263 0.99245 1.32583 1.22808 0.93642 0.89326 0.91108 1.22484 0.97764 0.90455 1.02566 1.22684 0.92077 0.99363 1.00070 1.22495 0.99694 0.91168 0.95512 1.22986 0.79137 0.84954 0.78940 1.90631 1.29047 1.50085 1.70079 1.86545 1.57871 1.46252 1.36244 1.23252 1.01189 0.86036 0.95476 1.22387 0.98324 0.97176 0.94786 1.23302 0.99908 0.94323 1.01567 1.23500 1.01350 0.90574 0.98072 0.93892 0.94644 0.94431 0.94073 0.88198 0.93245 0.86007 0.90395 0.90554 0.91526 0.91179 0.92032 0.92054 0.88139 0.91360 0.91571 0.90798 0.92273 0.91523 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.63 37.16 0.36 -2.43 16 2 C -0.13 -2.89 5.35 -26.73 -0.14 -3.03 16 3 C 0.22 5.05 1.83 -68.87 -0.13 4.92 16 4 H 0.01 0.28 6.43 -51.93 -0.33 -0.05 16 5 C -0.48 -12.49 7.50 -34.44 -0.26 -12.75 16 6 H 0.06 1.67 7.03 -52.49 -0.37 1.31 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.35 16 8 N -0.90 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.66 -12.94 6.48 -89.01 -0.58 -13.52 16 14 C 0.12 2.15 1.37 -126.31 -0.17 1.98 16 15 C -0.09 -1.66 4.52 -24.34 -0.11 -1.77 16 16 C -0.10 -1.51 5.86 -24.34 -0.14 -1.65 16 17 C -0.09 -1.26 1.40 -150.37 -0.21 -1.47 16 18 C 0.50 7.25 7.37 36.01 0.27 7.52 16 19 O -0.51 -8.42 16.15 -18.75 -0.30 -8.72 16 20 O -0.35 -4.57 10.57 -39.25 -0.41 -4.98 16 21 C 0.03 0.32 10.56 101.05 1.07 1.38 16 22 C -0.09 -1.30 5.46 -24.34 -0.13 -1.44 16 23 C -0.15 -2.47 5.13 -24.30 -0.12 -2.60 16 24 C -0.10 -1.44 6.07 -22.43 -0.14 -1.58 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.58 6.65 -51.93 -0.35 0.24 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.32 5.87 6.63 -39.29 -0.26 5.61 16 32 H 0.08 1.47 7.46 -51.93 -0.39 1.08 16 33 H 0.08 1.49 7.73 -51.92 -0.40 1.09 16 34 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 40 H 0.07 0.96 8.02 -51.93 -0.42 0.54 16 41 H 0.07 1.33 7.21 -51.93 -0.37 0.96 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -28.05 341.13 -7.88 -35.93 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.37 Total: 5.88 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 0.04 Total: -11.57 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.05 Total: -37.53 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.72 Total: -13.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.05 -7.88 -35.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.205 kcal (2) G-P(sol) polarization free energy of solvation -28.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds