Wall clock time and date at job start Tue Mar 31 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46921 * 2 1 4 4 H 1.09004 * 109.46717 * 180.93083 * 3 2 1 5 5 C 1.50702 * 109.47139 * 60.93195 * 3 2 1 6 6 H 1.08001 * 119.99094 * 240.00011 * 5 3 2 7 7 C 1.37872 * 120.00181 * 59.99799 * 5 3 2 8 8 N 1.31515 * 120.00277 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99695 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47326 * 90.00123 * 9 7 5 11 11 H 1.48509 * 109.47098 * 209.99797 * 9 7 5 12 12 H 1.48498 * 109.47526 * 329.99741 * 9 7 5 13 13 N 1.46895 * 109.47021 * 300.92635 * 3 2 1 14 14 C 1.46821 * 110.99886 * 181.27317 * 13 3 2 15 15 C 1.53962 * 109.06323 * 182.21190 * 14 13 3 16 16 H 1.09006 * 112.74488 * 170.22715 * 15 14 13 17 17 C 1.54718 * 107.21266 * 45.42928 * 15 14 13 18 18 C 1.53973 * 106.10324 * 274.31226 * 17 15 14 19 19 C 1.54705 * 106.17260 * 359.95475 * 18 17 15 20 20 H 1.08996 * 112.85059 * 210.47421 * 19 18 17 21 21 C 1.46820 * 111.00069 * 306.95967 * 13 3 2 22 22 C 1.55306 * 106.37365 * 295.29340 * 15 14 13 23 23 C 1.50697 * 111.09736 * 188.36633 * 22 15 14 24 24 O 1.20819 * 120.00226 * 359.97438 * 23 22 15 25 25 O 1.34232 * 119.99508 * 179.97438 * 23 22 15 26 26 C 1.45203 * 116.99823 * 180.02562 * 25 23 22 27 27 H 1.08998 * 109.47198 * 304.78561 * 1 2 3 28 28 H 1.08998 * 109.46890 * 64.79028 * 1 2 3 29 29 H 1.08998 * 109.47030 * 184.78491 * 1 2 3 30 30 H 1.08991 * 109.47153 * 239.99639 * 2 1 3 31 31 H 1.08998 * 109.46915 * 119.99857 * 2 1 3 32 32 H 0.96992 * 120.00336 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.53521 * 62.34068 * 14 13 3 34 34 H 1.08997 * 109.53938 * 302.09201 * 14 13 3 35 35 H 1.09005 * 110.12548 * 155.14868 * 17 15 14 36 36 H 1.08995 * 110.17584 * 33.50274 * 17 15 14 37 37 H 1.09003 * 110.12131 * 119.15705 * 18 17 15 38 38 H 1.08997 * 110.12004 * 240.75558 * 18 17 15 39 39 H 1.08999 * 109.54071 * 297.65525 * 21 13 3 40 40 H 1.08996 * 109.54289 * 57.82825 * 21 13 3 41 41 H 1.09003 * 111.09037 * 312.45779 * 22 15 14 42 42 H 1.09005 * 109.46725 * 300.00158 * 26 25 23 43 43 H 1.08999 * 109.47196 * 60.00075 * 26 25 23 44 44 H 1.08998 * 109.47173 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0167 5 6 1.5566 2.1462 1.2419 6 1 0.9343 3.0248 1.1569 7 6 1.9088 1.6685 2.4863 8 7 2.6662 0.5983 2.5897 9 14 1.3089 2.5404 4.0255 10 1 0.0073 1.9626 4.4463 11 1 2.3038 2.3639 5.1139 12 1 1.1390 3.9878 3.7402 13 7 1.5321 2.1414 -1.1880 14 6 2.0268 3.5229 -1.2374 15 6 1.4249 4.2290 -2.4660 16 1 1.6143 5.3024 -2.4701 17 6 -0.0832 3.8849 -2.4986 18 6 -0.1986 2.5404 -3.2400 19 6 1.2443 2.1340 -3.6225 20 1 1.2899 1.5497 -4.5415 21 6 1.8440 1.3931 -2.4121 22 6 1.9890 3.4949 -3.7129 23 6 1.6297 4.2253 -4.9811 24 8 0.9816 5.2436 -4.9289 25 8 2.0297 3.7445 -6.1688 26 6 1.6479 4.5002 -7.3484 27 1 -0.3633 0.5863 0.8440 28 1 -0.3633 0.4377 -0.9298 29 1 -0.3633 -1.0241 0.0857 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.9143 0.2624 3.4651 33 1 3.1140 3.5182 -1.3160 34 1 1.7279 4.0497 -0.3313 35 1 -0.6328 4.6579 -3.0359 36 1 -0.4687 3.7880 -1.4837 37 1 -0.6393 1.7881 -2.5858 38 1 -0.8056 2.6581 -4.1376 39 1 2.9252 1.3193 -2.5289 40 1 1.4152 0.3931 -2.3473 41 1 3.0675 3.3582 -3.6330 42 1 0.5610 4.5579 -7.4068 43 1 2.0623 5.5064 -7.2852 44 1 2.0334 4.0034 -8.2387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:30 Heat of formation + Delta-G solvation = -83.488355 kcal Electronic energy + Delta-G solvation = -24038.253047 eV Core-core repulsion = 20762.391422 eV Total energy + Delta-G solvation = -3275.861625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97873 -39.27836 -36.46590 -35.50647 -32.32260 -31.23456 -30.30626 -29.50562 -27.60653 -26.53866 -24.45577 -23.79874 -22.68494 -21.02561 -19.76512 -19.07738 -18.50255 -17.40721 -16.77072 -16.37155 -16.08795 -15.31873 -14.74538 -14.52055 -13.94153 -13.55474 -13.36426 -13.20549 -13.03181 -12.73663 -12.33357 -12.20962 -11.98626 -11.80395 -11.71522 -11.14663 -10.94933 -10.86153 -10.82680 -10.76424 -10.59506 -10.42492 -10.33195 -10.11094 -10.00284 -9.84469 -9.71943 -9.58559 -9.33070 -8.79297 -8.38163 -7.08885 -5.99610 -4.02908 2.30662 2.77291 3.31258 3.38353 3.41189 4.41012 4.64036 4.71481 4.84816 4.99541 5.04938 5.07805 5.21813 5.32362 5.41597 5.55526 5.63677 5.71489 5.79222 5.89001 5.98337 6.18375 6.26231 6.30214 6.38175 6.40187 6.44475 6.49042 6.55481 6.62343 6.71064 6.76385 6.81789 6.94421 7.13810 7.32382 7.42931 7.67209 7.76846 7.84623 7.85620 8.21914 8.35421 8.62020 9.02761 9.61321 11.06696 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030206 B = 0.004865 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.742639 B = 5753.693884 C = 6091.036093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.220 3.780 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.073 3.927 15 C -0.075 4.075 16 H 0.088 0.912 17 C -0.100 4.100 18 C -0.104 4.104 19 C -0.081 4.081 20 H 0.088 0.912 21 C 0.060 3.940 22 C -0.089 4.089 23 C 0.473 3.527 24 O -0.506 6.506 25 O -0.361 6.361 26 C 0.035 3.965 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.259 0.741 33 H 0.020 0.980 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.021 0.979 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 3.544 -14.836 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.253 5.253 14 C -0.056 4.056 15 C -0.094 4.094 16 H 0.106 0.894 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.100 4.100 20 H 0.106 0.894 21 C -0.069 4.069 22 C -0.109 4.109 23 C 0.316 3.684 24 O -0.393 6.393 25 O -0.278 6.278 26 C -0.059 4.059 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.239 3.761 -14.648 15.288 hybrid contribution 0.660 0.497 0.599 1.021 sum -1.579 4.258 -14.049 14.764 Atomic orbital electron populations 1.21499 0.97265 0.97612 1.01496 1.21603 0.95182 0.98247 1.00117 1.19235 0.92562 0.90708 0.86098 0.98628 1.21049 1.30801 1.11851 0.89542 0.91971 1.24885 0.95226 0.95088 0.98875 1.69870 1.36793 1.22803 1.23773 0.86599 0.78432 0.80035 0.82933 1.20760 1.21493 1.19976 1.61671 1.60643 1.00949 1.02039 1.22137 0.95551 0.90890 0.96983 1.22489 0.96478 0.98467 0.91983 0.89367 1.22027 0.94712 0.95649 1.01360 1.22110 0.94804 0.98491 0.98724 1.22570 0.95739 0.93127 0.98577 0.89352 1.22288 0.96888 0.97912 0.89785 1.22519 1.02117 0.97294 0.88924 1.23884 0.75909 0.83430 0.85137 1.90618 1.36561 1.24631 1.87489 1.86541 1.71958 1.53680 1.15656 1.23202 1.01074 0.96498 0.85126 0.92127 0.94066 0.96670 0.96753 0.89036 0.93073 0.96207 0.89183 0.93049 0.90267 0.90119 0.93969 0.96073 0.90027 0.87672 0.92097 0.92172 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.41 37.16 0.35 -2.20 16 2 C -0.11 -2.57 4.95 -26.73 -0.13 -2.70 16 3 C 0.22 5.15 1.79 -68.86 -0.12 5.02 16 4 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 5 C -0.49 -12.64 6.61 -34.44 -0.23 -12.86 16 6 H 0.06 1.60 6.77 -52.49 -0.36 1.25 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -24.59 11.31 55.43 0.63 -23.97 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.53 -10.24 2.62 -226.87 -0.59 -10.84 16 14 C 0.07 1.33 4.64 -3.37 -0.02 1.32 16 15 C -0.08 -1.19 3.28 -87.99 -0.29 -1.48 16 16 H 0.09 1.37 7.95 -51.93 -0.41 0.96 16 17 C -0.10 -1.59 5.38 -25.32 -0.14 -1.73 16 18 C -0.10 -1.56 5.62 -25.33 -0.14 -1.70 16 19 C -0.08 -1.18 3.74 -87.90 -0.33 -1.50 16 20 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.06 1.01 4.17 -3.31 -0.01 1.00 16 22 C -0.09 -1.30 2.73 -89.28 -0.24 -1.54 16 23 C 0.47 6.90 6.86 36.00 0.25 7.14 16 24 O -0.51 -8.38 15.02 -18.74 -0.28 -8.66 16 25 O -0.36 -4.64 10.57 -39.26 -0.41 -5.06 16 26 C 0.03 0.33 10.56 101.05 1.07 1.40 16 27 H 0.06 1.40 7.08 -51.93 -0.37 1.03 16 28 H 0.04 0.80 6.27 -51.93 -0.33 0.47 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.01 0.29 6.33 -51.93 -0.33 -0.04 16 31 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.02 0.37 8.03 -51.93 -0.42 -0.05 16 34 H 0.09 1.81 6.48 -51.93 -0.34 1.47 16 35 H 0.05 0.82 7.68 -51.93 -0.40 0.42 16 36 H 0.08 1.38 7.79 -51.93 -0.40 0.97 16 37 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.02 0.36 8.03 -51.93 -0.42 -0.05 16 40 H 0.08 1.40 5.68 -51.93 -0.29 1.11 16 41 H 0.11 1.46 7.87 -51.93 -0.41 1.06 16 42 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -27.74 329.56 -8.03 -35.77 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.23 Total: 0.33 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.08 Total: -8.35 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.03 Total: -34.80 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.70 Total: -13.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.74 -8.03 -35.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.716 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds