Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46995 * 2 1 4 4 H 1.09000 * 109.46510 * 55.00687 * 3 2 1 5 5 C 1.50708 * 109.46793 * 175.00115 * 3 2 1 6 6 H 1.07992 * 119.99783 * 120.00384 * 5 3 2 7 7 C 1.37875 * 119.99987 * 300.00154 * 5 3 2 8 8 N 1.31518 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00073 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46687 * 59.99829 * 9 7 5 11 11 H 1.48495 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47034 * 300.00529 * 9 7 5 13 13 N 1.46894 * 109.47366 * 295.00188 * 3 2 1 14 14 C 1.46817 * 111.00089 * 175.00177 * 13 3 2 15 15 C 1.53963 * 109.06480 * 182.21487 * 14 13 3 16 16 H 1.08998 * 112.73978 * 170.22839 * 15 14 13 17 17 C 1.54707 * 107.21435 * 45.42605 * 15 14 13 18 18 C 1.53975 * 106.10466 * 273.51726 * 17 15 14 19 19 C 1.54712 * 106.16721 * 359.95589 * 18 17 15 20 20 H 1.08999 * 112.84780 * 210.46604 * 19 18 17 21 21 C 1.46817 * 111.00290 * 300.68099 * 13 3 2 22 22 C 1.55304 * 107.07920 * 294.97131 * 15 14 13 23 23 C 1.50701 * 111.09515 * 188.64556 * 22 15 14 24 24 O 1.20823 * 120.00091 * 359.97438 * 23 22 15 25 25 O 1.34226 * 119.99817 * 180.02562 * 23 22 15 26 26 C 1.45208 * 116.99827 * 179.97438 * 25 23 22 27 27 H 1.08994 * 109.46370 * 299.99844 * 1 2 3 28 28 H 1.09003 * 109.46958 * 59.99303 * 1 2 3 29 29 H 1.08995 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46773 * 240.00455 * 2 1 3 31 31 H 1.08996 * 109.47306 * 120.00492 * 2 1 3 32 32 H 0.97001 * 119.99719 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.53717 * 62.33294 * 14 13 3 34 34 H 1.09004 * 109.60087 * 302.12972 * 14 13 3 35 35 H 1.08999 * 110.12580 * 154.36139 * 17 15 14 36 36 H 1.08998 * 110.12351 * 32.67703 * 17 15 14 37 37 H 1.09002 * 110.12456 * 119.15272 * 18 17 15 38 38 H 1.09005 * 110.12586 * 240.76559 * 18 17 15 39 39 H 1.08998 * 109.54129 * 297.66314 * 21 13 3 40 40 H 1.09007 * 109.53608 * 57.83023 * 21 13 3 41 41 H 1.08997 * 111.09800 * 312.73054 * 22 15 14 42 42 H 1.09002 * 109.47004 * 179.97438 * 26 25 23 43 43 H 1.08998 * 109.46993 * 299.99823 * 26 25 23 44 44 H 1.08997 * 109.47020 * 59.99582 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8811 1.3817 10 1 6.4995 2.2814 1.3821 11 1 6.3978 0.2165 2.6502 12 1 6.5976 0.1473 0.2347 13 7 1.6514 2.0994 -1.2551 14 6 2.0206 3.5203 -1.2417 15 6 1.5446 4.1760 -2.5509 16 1 1.6345 5.2621 -2.5351 17 6 0.0953 3.6966 -2.8024 18 6 0.2125 2.3615 -3.5604 19 6 1.7269 2.0958 -3.7332 20 1 1.9575 1.5356 -4.6393 21 6 2.2067 1.3897 -2.4143 22 6 2.3471 3.5203 -3.7075 23 6 2.1066 4.2390 -5.0101 24 8 1.3659 5.1928 -5.0460 25 8 2.7145 3.8188 -6.1306 26 6 2.4359 4.5583 -7.3488 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8294 -0.0613 2.9497 33 1 3.1033 3.6148 -1.1592 34 1 1.5460 4.0134 -0.3933 35 1 -0.4411 4.4263 -3.4089 36 1 -0.4196 3.5453 -1.8537 37 1 -0.2452 1.5598 -2.9809 38 1 -0.2680 2.4405 -4.5356 39 1 3.2955 1.4151 -2.3700 40 1 1.8655 0.3545 -2.4057 41 1 3.4110 3.4810 -3.4739 42 1 2.9894 4.1159 -8.1770 43 1 1.3678 4.5177 -7.5622 44 1 2.7417 5.5968 -7.2213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -86.763918 kcal Electronic energy + Delta-G solvation = -24039.646133 eV Core-core repulsion = 20763.642469 eV Total energy + Delta-G solvation = -3276.003664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89388 -39.17828 -36.43629 -35.47710 -32.21933 -31.20296 -30.37075 -29.48413 -27.55551 -26.61180 -24.27352 -23.88833 -22.49703 -20.99514 -19.78518 -19.06705 -18.54422 -17.36172 -16.80008 -16.49686 -15.99236 -15.43475 -14.53506 -14.50599 -13.95291 -13.62710 -13.29771 -13.11472 -12.88871 -12.66572 -12.35275 -12.21083 -11.98647 -11.80903 -11.50454 -11.20713 -11.07234 -10.82452 -10.80837 -10.78678 -10.62198 -10.58280 -10.35523 -10.11162 -10.04445 -9.78149 -9.68053 -9.63289 -9.29758 -9.08379 -8.36599 -7.08026 -5.99276 -4.13420 2.34370 2.81224 3.26513 3.32253 3.34612 4.38200 4.69352 4.78084 4.88674 5.02346 5.08562 5.13288 5.24123 5.26650 5.44477 5.57697 5.69083 5.74894 5.86267 5.95876 6.03024 6.19855 6.26909 6.36928 6.41563 6.42653 6.47236 6.52642 6.59857 6.65545 6.71317 6.72920 6.78047 6.90657 7.10449 7.19953 7.33546 7.61319 7.75932 7.88289 7.97690 8.15417 8.33204 8.47261 8.96628 9.54309 10.99060 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.005552 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.574819 B = 5041.772083 C = 5765.326546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.217 3.783 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.533 5.533 14 C 0.071 3.929 15 C -0.075 4.075 16 H 0.086 0.914 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.087 4.087 20 H 0.089 0.911 21 C 0.071 3.929 22 C -0.089 4.089 23 C 0.474 3.526 24 O -0.508 6.508 25 O -0.361 6.361 26 C 0.035 3.965 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 4.397 -13.081 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.257 5.257 14 C -0.057 4.057 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.137 4.137 18 C -0.142 4.142 19 C -0.106 4.106 20 H 0.107 0.893 21 C -0.057 4.057 22 C -0.108 4.108 23 C 0.317 3.683 24 O -0.396 6.396 25 O -0.277 6.277 26 C -0.059 4.059 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.158 4.569 -12.951 14.349 hybrid contribution 2.053 0.188 0.019 2.061 sum -2.105 4.757 -12.933 13.940 Atomic orbital electron populations 1.21719 0.98842 0.98374 1.00623 1.21640 0.92249 0.99226 1.02002 1.19237 0.92919 0.91068 0.85686 0.94295 1.21690 0.92914 1.38194 1.05463 0.92717 1.24888 0.97652 0.95029 0.95707 1.69861 1.34836 1.38187 1.09411 0.86773 0.86378 0.78183 0.77344 1.20421 1.21284 1.20379 1.62005 1.59061 1.00795 1.03857 1.22036 0.98686 0.90208 0.94802 1.22459 0.95097 0.98758 0.93078 0.89576 1.22027 0.95689 0.95601 1.00413 1.22117 0.94901 0.98727 0.98486 1.23184 0.95739 0.92582 0.99073 0.89298 1.22650 0.97542 0.97404 0.88121 1.22461 1.02706 0.97176 0.88431 1.23924 0.76459 0.82214 0.85704 1.90609 1.35120 1.27482 1.86360 1.86550 1.66318 1.57086 1.17791 1.23200 1.01966 0.96652 0.84082 0.94226 0.93318 0.95696 0.94810 0.89003 0.92851 0.94285 0.91185 0.93054 0.90734 0.90401 0.94068 0.94219 0.90520 0.87433 0.88423 0.92126 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.80 37.16 0.36 -2.31 16 2 C -0.11 -2.53 5.02 -26.73 -0.13 -2.66 16 3 C 0.22 5.01 1.75 -68.86 -0.12 4.89 16 4 H 0.04 1.02 8.12 -51.93 -0.42 0.60 16 5 C -0.54 -13.79 7.11 -34.44 -0.24 -14.04 16 6 H 0.05 1.39 5.93 -52.49 -0.31 1.08 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.15 11.29 55.43 0.63 -23.52 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.53 -10.25 2.89 -224.79 -0.65 -10.89 16 14 C 0.07 1.30 4.61 -3.37 -0.02 1.28 16 15 C -0.08 -1.19 3.24 -88.00 -0.29 -1.47 16 16 H 0.09 1.34 7.91 -51.93 -0.41 0.92 16 17 C -0.10 -1.54 5.37 -25.32 -0.14 -1.67 16 18 C -0.10 -1.56 5.62 -25.32 -0.14 -1.70 16 19 C -0.09 -1.30 3.88 -86.22 -0.33 -1.64 16 20 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 21 C 0.07 1.28 4.30 -1.64 -0.01 1.27 16 22 C -0.09 -1.34 2.74 -89.28 -0.25 -1.59 16 23 C 0.47 7.12 6.86 36.01 0.25 7.36 16 24 O -0.51 -8.53 15.00 -18.75 -0.28 -8.81 16 25 O -0.36 -4.85 10.57 -39.25 -0.41 -5.26 16 26 C 0.03 0.34 10.56 101.05 1.07 1.41 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.89 7.53 -51.93 -0.39 0.50 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.74 6.09 -51.93 -0.32 0.42 16 31 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 33 H 0.04 0.77 6.77 -51.93 -0.35 0.42 16 34 H 0.07 1.30 8.13 -51.93 -0.42 0.87 16 35 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.07 1.20 7.76 -51.93 -0.40 0.79 16 37 H 0.08 1.21 7.56 -51.93 -0.39 0.81 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.04 0.78 6.51 -51.93 -0.34 0.44 16 40 H 0.08 1.40 6.07 -51.93 -0.32 1.09 16 41 H 0.11 1.63 7.93 -51.93 -0.41 1.21 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -27.31 332.02 -8.11 -35.41 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.29 Total: 1.62 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.08 Total: -9.12 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.02 Total: -34.42 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.70 Total: -14.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.31 -8.11 -35.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.352 kcal (2) G-P(sol) polarization free energy of solvation -27.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds