Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.78051 * 2 1 4 4 C 1.53235 * 109.62327 * 120.47420 * 2 1 3 5 5 C 1.52966 * 109.40192 * 174.33957 * 4 2 1 6 6 H 1.09007 * 109.35215 * 56.47162 * 5 4 2 7 7 C 1.50700 * 109.41294 * 176.29566 * 5 4 2 8 8 O 1.21283 * 119.99803 * 0.35345 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.63221 * 7 5 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47258 * 300.00045 * 11 10 9 13 13 C 1.52995 * 109.47338 * 60.00083 * 11 10 9 14 14 C 1.50702 * 109.47525 * 180.02562 * 11 10 9 15 15 H 1.08002 * 119.99441 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00641 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99481 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00577 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46662 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47530 * 119.99486 * 18 16 14 21 21 H 1.48501 * 109.46908 * 239.99863 * 18 16 14 22 22 C 1.52957 * 109.81761 * 296.40672 * 5 4 2 23 23 C 1.53222 * 109.40789 * 63.59711 * 22 5 4 24 24 C 1.51262 * 109.62636 * 239.51724 * 2 1 3 25 25 O 1.20763 * 120.84773 * 8.92109 * 24 2 1 26 26 H 1.08997 * 109.47283 * 180.48034 * 1 2 3 27 27 H 1.09005 * 109.46935 * 300.48021 * 1 2 3 28 28 H 1.09001 * 109.47145 * 60.47700 * 1 2 3 29 29 H 1.08993 * 109.48114 * 54.36472 * 4 2 1 30 30 H 1.08993 * 109.48239 * 294.31710 * 4 2 1 31 31 H 0.97000 * 119.99894 * 359.71837 * 9 7 5 32 32 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 33 33 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 34 34 H 1.08998 * 109.46912 * 59.99446 * 12 11 10 35 35 H 1.08994 * 109.47328 * 180.02562 * 12 11 10 36 36 H 1.09007 * 109.46697 * 300.00044 * 12 11 10 37 37 H 1.09003 * 109.47465 * 59.99650 * 13 11 10 38 38 H 1.09001 * 109.47749 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46864 * 300.00020 * 13 11 10 40 40 H 0.97000 * 120.00289 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.48061 * 183.58076 * 22 5 4 42 42 H 1.09006 * 109.47644 * 303.59923 * 22 5 4 43 43 H 1.08991 * 109.63027 * 65.08455 * 23 22 5 44 44 H 1.08999 * 109.62820 * 185.66103 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0446 -0.7320 1.2440 5 6 3.5676 -0.8528 1.1687 6 1 4.0039 0.1402 1.0604 7 6 4.0825 -1.4910 2.4331 8 8 3.3068 -1.8224 3.3045 9 7 5.4056 -1.6883 2.5979 10 6 5.9066 -2.3031 3.8296 11 6 7.4311 -2.4121 3.7616 12 6 7.8278 -3.2757 2.5625 13 6 8.0359 -1.0153 3.6064 14 6 7.9466 -3.0452 5.0284 15 1 7.2558 -3.3399 5.8045 16 6 9.3000 -3.2471 5.1970 17 7 10.1412 -2.8877 4.2521 18 14 9.9388 -4.0325 6.7669 19 1 8.7975 -4.3431 7.6648 20 1 10.6629 -5.2856 6.4344 21 1 10.8638 -3.0925 7.4496 22 6 3.9608 -1.7145 -0.0323 23 6 3.5183 -1.0196 -1.3242 24 6 2.0381 -0.7227 -1.2278 25 8 1.2813 -1.0546 -2.1085 26 1 -0.3634 -1.0276 0.0086 27 1 -0.3633 0.5213 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 1.6028 -1.7273 1.2888 30 1 1.7681 -0.1707 2.1364 31 1 6.0259 -1.4232 1.9009 32 1 5.6237 -1.6881 4.6839 33 1 5.4762 -3.2985 3.9401 34 1 7.4550 -2.8183 1.6461 35 1 8.9139 -3.3537 2.5144 36 1 7.3970 -4.2709 2.6732 37 1 7.7533 -0.4000 4.4606 38 1 9.1220 -1.0929 3.5575 39 1 7.6631 -0.5578 2.6899 40 1 11.0933 -3.0301 4.3704 41 1 5.0423 -1.8497 -0.0443 42 1 3.4737 -2.6868 0.0430 43 1 4.0711 -0.0883 -1.4468 44 1 3.7056 -1.6746 -2.1750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275350316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -107.440890 kcal Electronic energy + Delta-G solvation = -22740.314832 eV Core-core repulsion = 19463.414547 eV Total energy + Delta-G solvation = -3276.900285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58761 -39.24555 -36.72751 -35.95790 -33.57660 -32.94105 -30.93227 -29.77664 -26.59366 -25.77265 -25.57353 -24.88980 -22.66745 -22.42413 -19.81870 -19.30632 -18.82019 -17.03928 -16.19140 -15.94343 -15.74289 -15.30847 -15.16495 -14.67765 -14.48907 -14.21225 -13.69948 -13.26697 -13.04693 -12.93907 -12.67878 -12.55420 -12.29473 -12.21289 -11.93285 -11.65653 -11.43292 -11.25942 -11.18562 -11.16539 -10.91623 -10.88574 -10.68833 -10.43081 -10.23423 -9.67980 -9.56609 -9.52775 -9.23477 -8.81501 -8.49453 -8.35151 -6.05683 -4.15687 1.74630 2.97072 3.24855 3.33699 3.37958 3.61856 3.82385 4.35928 4.37340 4.50454 4.66721 4.69352 4.91156 4.99064 5.13371 5.18134 5.21375 5.27436 5.42140 5.55910 5.60865 5.70478 5.73974 5.79528 5.95316 6.03975 6.10841 6.20029 6.28894 6.46461 6.73868 6.77193 6.88697 6.97353 6.98702 7.28561 7.31162 7.51403 7.66206 7.97019 8.00614 8.11490 8.34869 8.65063 8.85404 9.50500 10.95736 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003408 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.649509 B = 8214.062558 C = 8597.402362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 H 0.105 0.895 4 C -0.088 4.088 5 C -0.114 4.114 6 H 0.101 0.899 7 C 0.508 3.492 8 O -0.551 6.551 9 N -0.715 5.715 10 C 0.131 3.869 11 C 0.055 3.945 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.107 4.107 23 C -0.168 4.168 24 C 0.364 3.636 25 O -0.456 6.456 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.398 0.602 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 6.746 -10.194 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 H 0.123 0.877 4 C -0.126 4.126 5 C -0.136 4.136 6 H 0.119 0.881 7 C 0.293 3.707 8 O -0.429 6.429 9 N -0.366 5.366 10 C 0.009 3.991 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.205 4.205 24 C 0.239 3.761 25 O -0.329 6.329 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.233 0.767 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.542 6.307 -10.047 16.551 hybrid contribution 0.908 -0.243 0.596 1.113 sum -10.634 6.065 -9.451 15.465 Atomic orbital electron populations 1.21642 0.93051 1.02787 1.02143 1.21929 0.97979 1.01194 0.94972 0.87700 1.21387 0.92897 1.01853 0.96422 1.21420 0.97527 1.00908 0.93729 0.88131 1.20378 0.82905 0.79278 0.88095 1.90675 1.56230 1.51898 1.44105 1.46335 1.06585 1.61777 1.21853 1.21720 0.97097 0.96306 0.84026 1.18361 0.87239 0.93406 0.95521 1.21828 1.04374 0.97731 0.94861 1.21828 1.04511 0.96391 0.96085 1.21030 0.92092 1.39786 1.01538 0.92399 1.24878 0.96849 0.95309 0.96483 1.69808 1.02561 1.47525 1.32558 0.86520 0.78908 0.79002 0.83495 1.19750 1.21052 1.21058 1.21521 1.02651 0.98932 0.91343 1.22319 0.94914 1.03340 0.99972 1.24961 0.90884 0.74529 0.85719 1.90386 1.60163 1.42653 1.39739 0.92190 0.91781 0.92084 0.90679 0.89713 0.76715 0.92732 0.92740 0.97537 0.89599 0.95458 0.95456 0.89597 0.97528 0.93053 0.89765 0.90696 0.88034 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.60 37.16 0.32 -0.92 16 2 C -0.14 -1.24 3.01 -91.37 -0.27 -1.52 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.09 -0.91 3.83 -26.63 -0.10 -1.02 16 5 C -0.11 -1.22 2.42 -91.81 -0.22 -1.44 16 6 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 7 C 0.51 7.91 7.15 -10.98 -0.08 7.83 16 8 O -0.55 -10.73 15.94 5.55 0.09 -10.64 16 9 N -0.72 -11.66 4.83 -60.30 -0.29 -11.95 16 10 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 11 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 12 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 13 C -0.13 -2.82 8.08 37.15 0.30 -2.52 16 14 C -0.51 -12.97 8.01 -34.44 -0.28 -13.25 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 17 N -0.89 -23.12 9.35 55.43 0.52 -22.60 16 18 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C -0.11 -1.00 5.15 -26.64 -0.14 -1.14 16 23 C -0.17 -1.36 6.17 -27.49 -0.17 -1.53 16 24 C 0.36 3.68 6.58 -28.48 -0.19 3.49 16 25 O -0.46 -6.09 16.86 6.00 0.10 -5.99 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 31 H 0.40 5.74 5.54 -40.82 -0.23 5.51 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.08 0.74 7.47 -51.93 -0.39 0.36 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -29.27 343.73 -7.54 -36.82 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.40 Total: 2.89 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.72 Total: -9.09 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.23 Total: -34.56 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.19 Total: -16.63 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.27 -7.54 -36.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275350316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.624 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds