Wall clock time and date at job start Tue Mar 31 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.78051 * 2 1 4 4 C 1.53235 * 109.62327 * 120.47420 * 2 1 3 5 5 C 1.52966 * 109.40192 * 174.33957 * 4 2 1 6 6 H 1.09007 * 109.35215 * 56.47162 * 5 4 2 7 7 C 1.50700 * 109.41294 * 176.29566 * 5 4 2 8 8 O 1.21283 * 119.99803 * 0.35345 * 7 5 4 9 9 N 1.34777 * 119.99675 * 180.63221 * 7 5 4 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 11 11 C 1.52999 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47258 * 300.00045 * 11 10 9 13 13 C 1.52995 * 109.47338 * 60.00083 * 11 10 9 14 14 C 1.50702 * 109.47525 * 180.02562 * 11 10 9 15 15 H 1.08002 * 119.99441 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00641 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99481 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00577 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46662 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47530 * 119.99486 * 18 16 14 21 21 H 1.48501 * 109.46908 * 239.99863 * 18 16 14 22 22 C 1.52957 * 109.81761 * 296.40672 * 5 4 2 23 23 C 1.53222 * 109.40789 * 63.59711 * 22 5 4 24 24 C 1.51262 * 109.62636 * 239.51724 * 2 1 3 25 25 O 1.20763 * 120.84773 * 8.92109 * 24 2 1 26 26 H 1.08997 * 109.47283 * 180.48034 * 1 2 3 27 27 H 1.09005 * 109.46935 * 300.48021 * 1 2 3 28 28 H 1.09001 * 109.47145 * 60.47700 * 1 2 3 29 29 H 1.08993 * 109.48114 * 54.36472 * 4 2 1 30 30 H 1.08993 * 109.48239 * 294.31710 * 4 2 1 31 31 H 0.97000 * 119.99894 * 359.71837 * 9 7 5 32 32 H 1.08995 * 109.47421 * 299.99467 * 10 9 7 33 33 H 1.09001 * 109.47621 * 60.00103 * 10 9 7 34 34 H 1.08998 * 109.46912 * 59.99446 * 12 11 10 35 35 H 1.08994 * 109.47328 * 180.02562 * 12 11 10 36 36 H 1.09007 * 109.46697 * 300.00044 * 12 11 10 37 37 H 1.09003 * 109.47465 * 59.99650 * 13 11 10 38 38 H 1.09001 * 109.47749 * 180.02562 * 13 11 10 39 39 H 1.09003 * 109.46864 * 300.00020 * 13 11 10 40 40 H 0.97000 * 120.00289 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.48061 * 183.58076 * 22 5 4 42 42 H 1.09006 * 109.47644 * 303.59923 * 22 5 4 43 43 H 1.08991 * 109.63027 * 65.08455 * 23 22 5 44 44 H 1.08999 * 109.62820 * 185.66103 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0446 -0.7320 1.2440 5 6 3.5676 -0.8528 1.1687 6 1 4.0039 0.1402 1.0604 7 6 4.0825 -1.4910 2.4331 8 8 3.3068 -1.8224 3.3045 9 7 5.4056 -1.6883 2.5979 10 6 5.9066 -2.3031 3.8296 11 6 7.4311 -2.4121 3.7616 12 6 7.8278 -3.2757 2.5625 13 6 8.0359 -1.0153 3.6064 14 6 7.9466 -3.0452 5.0284 15 1 7.2558 -3.3399 5.8045 16 6 9.3000 -3.2471 5.1970 17 7 10.1412 -2.8877 4.2521 18 14 9.9388 -4.0325 6.7669 19 1 8.7975 -4.3431 7.6648 20 1 10.6629 -5.2856 6.4344 21 1 10.8638 -3.0925 7.4496 22 6 3.9608 -1.7145 -0.0323 23 6 3.5183 -1.0196 -1.3242 24 6 2.0381 -0.7227 -1.2278 25 8 1.2813 -1.0546 -2.1085 26 1 -0.3634 -1.0276 0.0086 27 1 -0.3633 0.5213 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 1.6028 -1.7273 1.2888 30 1 1.7681 -0.1707 2.1364 31 1 6.0259 -1.4232 1.9009 32 1 5.6237 -1.6881 4.6839 33 1 5.4762 -3.2985 3.9401 34 1 7.4550 -2.8183 1.6461 35 1 8.9139 -3.3537 2.5144 36 1 7.3970 -4.2709 2.6732 37 1 7.7533 -0.4000 4.4606 38 1 9.1220 -1.0929 3.5575 39 1 7.6631 -0.5578 2.6899 40 1 11.0933 -3.0301 4.3704 41 1 5.0423 -1.8497 -0.0443 42 1 3.4737 -2.6868 0.0430 43 1 4.0711 -0.0883 -1.4468 44 1 3.7056 -1.6746 -2.1750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275350316.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:52 Heat of formation + Delta-G solvation = -124.246084 kcal Electronic energy + Delta-G solvation = -22741.043560 eV Core-core repulsion = 19463.414547 eV Total energy + Delta-G solvation = -3277.629013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53819 -40.41093 -38.23470 -37.07218 -35.03371 -33.90230 -32.62879 -30.68514 -27.66969 -27.52458 -27.24151 -26.38980 -23.65438 -23.25291 -21.04451 -20.57367 -20.05526 -18.33029 -17.65145 -17.02614 -16.72134 -16.67779 -16.43157 -16.14598 -15.60671 -15.16430 -14.93249 -14.73530 -14.53760 -14.04671 -13.90793 -13.74255 -13.32082 -13.17343 -13.08866 -13.06026 -12.69633 -12.64666 -12.56887 -12.48191 -12.22424 -12.12526 -11.97497 -11.95588 -11.67781 -11.45341 -11.23017 -10.73308 -10.58773 -10.38457 -10.30050 -9.88292 -8.01606 -6.16787 0.97830 1.41141 1.45979 1.54690 1.74006 2.34244 2.51345 3.09456 3.22178 3.56664 3.69036 3.77228 3.95044 4.18776 4.24313 4.34039 4.44007 4.46775 4.54204 4.56238 4.64427 4.76504 4.84345 4.94410 4.97433 5.01072 5.05561 5.08010 5.10136 5.14586 5.22977 5.24654 5.27898 5.32263 5.41643 5.64652 5.69211 5.70942 6.19490 6.25136 6.46014 6.53500 6.73977 6.88033 7.39252 7.51086 8.97079 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.003408 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.649509 B = 8214.062558 C = 8597.402362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 H 0.137 0.863 4 C -0.083 4.083 5 C -0.103 4.103 6 H 0.138 0.862 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.708 5.708 10 C 0.147 3.853 11 C 0.051 3.949 12 C -0.120 4.120 13 C -0.120 4.120 14 C -0.529 4.529 15 H 0.042 0.958 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.942 3.058 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.103 4.103 23 C -0.159 4.159 24 C 0.363 3.637 25 O -0.495 6.495 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.410 0.590 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.260 0.740 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.135 0.865 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 8.271 -11.560 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 H 0.155 0.845 4 C -0.122 4.122 5 C -0.124 4.124 6 H 0.156 0.844 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.360 5.360 10 C 0.023 3.977 11 C 0.050 3.950 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.568 4.568 15 H 0.060 0.940 16 C -0.170 4.170 17 N -0.536 5.536 18 Si 0.769 3.231 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.141 4.141 23 C -0.196 4.196 24 C 0.241 3.759 25 O -0.371 6.371 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.248 0.752 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.153 0.847 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.242 7.845 -11.433 17.851 hybrid contribution 0.779 -0.732 1.052 1.500 sum -10.463 7.113 -10.381 16.366 Atomic orbital electron populations 1.21651 0.93469 1.01919 1.02747 1.21933 0.97686 1.02415 0.93312 0.84534 1.21312 0.92826 1.00876 0.97145 1.21447 0.97407 1.02339 0.91164 0.84426 1.21254 0.81957 0.78180 0.89143 1.90664 1.57136 1.53536 1.46127 1.46140 1.07384 1.61666 1.20771 1.21225 0.95774 0.95265 0.85418 1.18357 0.88321 0.93798 0.94510 1.21667 1.02644 0.97371 0.96130 1.21664 1.02800 0.95879 0.97469 1.21330 0.92267 1.40399 1.02755 0.93995 1.25411 0.97100 0.95859 0.98670 1.69904 1.02570 1.47793 1.33366 0.85759 0.78133 0.78327 0.80890 1.20152 1.20806 1.20724 1.21504 1.03308 0.98035 0.91280 1.22312 0.93478 1.04825 0.99033 1.25411 0.91745 0.73386 0.85331 1.90387 1.61228 1.44239 1.41205 0.93887 0.90543 0.92059 0.92907 0.90170 0.75200 0.94503 0.94757 0.93947 0.92029 0.96571 0.96406 0.92043 0.93934 0.93068 0.88418 0.92385 0.84680 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.60 71.98 0.62 -1.69 16 2 C -0.13 -2.00 3.01 -11.28 -0.03 -2.04 16 3 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.08 -1.58 3.83 30.66 0.12 -1.47 16 5 C -0.10 -1.86 2.42 -11.57 -0.03 -1.89 16 6 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 7 C 0.51 14.91 7.15 87.66 0.63 15.53 16 8 O -0.59 -23.03 15.94 -3.04 -0.05 -23.08 16 9 N -0.71 -21.65 4.83 -463.07 -2.24 -23.89 16 10 C 0.15 5.96 4.50 86.38 0.39 6.35 16 11 C 0.05 2.24 0.50 -52.93 -0.03 2.21 16 12 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 13 C -0.12 -5.03 8.08 71.98 0.58 -4.45 16 14 C -0.53 -27.43 8.01 25.60 0.21 -27.23 16 15 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 16 C 0.03 1.52 5.15 84.65 0.44 1.96 16 17 N -0.90 -46.73 9.35 21.45 0.20 -46.53 16 18 Si 0.94 42.04 29.54 68.60 2.03 44.06 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.10 -1.60 5.15 30.65 0.16 -1.45 16 23 C -0.16 -1.98 6.17 30.10 0.19 -1.79 16 24 C 0.36 6.48 6.58 29.46 0.19 6.67 16 25 O -0.49 -12.63 16.86 -1.46 -0.02 -12.65 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.01 8.04 -2.39 -0.02 0.99 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.62 8.00 -2.39 -0.02 1.60 16 31 H 0.41 10.34 5.54 -92.71 -0.51 9.82 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 35 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 36 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 39 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 40 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 41 H 0.10 1.30 7.47 -2.39 -0.02 1.29 16 42 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -65.08 343.73 4.38 -60.70 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.46 Total: 15.14 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 4.00 Total: -13.76 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -2.04 Total: -70.42 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.07 Total: -35.73 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -65.08 4.38 -60.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275350316.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.551 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds