Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 110.36717 * 2 1 4 4 C 1.54377 * 110.41279 * 237.64846 * 2 1 3 5 5 C 1.54261 * 105.06141 * 217.37300 * 4 2 1 6 6 C 1.54378 * 105.05982 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.41156 * 265.07828 * 6 5 4 8 8 C 1.52998 * 110.41315 * 142.75029 * 6 5 4 9 9 N 1.48563 * 110.40697 * 122.47677 * 2 1 3 10 10 C 1.46907 * 110.99715 * 277.81510 * 9 2 1 11 11 C 1.50697 * 109.47395 * 298.82594 * 10 9 2 12 12 O 1.20831 * 120.00127 * 6.33827 * 11 10 9 13 13 O 1.34226 * 120.00033 * 186.34007 * 11 10 9 14 14 C 1.45206 * 117.00078 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.46946 * 179.97438 * 14 13 11 16 16 C 1.50701 * 115.55246 * 65.31077 * 15 14 13 17 17 H 1.08009 * 119.99585 * 269.91872 * 16 15 14 18 18 C 1.37875 * 120.00652 * 89.90845 * 16 15 14 19 19 N 1.31520 * 119.99547 * 3.50948 * 18 16 15 20 20 Si 1.86794 * 120.00578 * 183.50580 * 18 16 15 21 21 H 1.48508 * 109.46969 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47193 * 120.00064 * 20 18 16 23 23 H 1.48500 * 109.47179 * 240.00694 * 20 18 16 24 24 C 1.53001 * 117.50425 * 279.63434 * 15 14 13 25 25 C 1.53006 * 117.49754 * 210.97466 * 15 14 13 26 26 H 1.08999 * 109.46861 * 180.89793 * 1 2 3 27 27 H 1.09002 * 109.46958 * 60.89888 * 1 2 3 28 28 H 1.09001 * 109.47143 * 300.89802 * 1 2 3 29 29 H 1.09005 * 110.32135 * 336.26312 * 4 2 1 30 30 H 1.08999 * 110.32389 * 98.37144 * 4 2 1 31 31 H 1.08995 * 110.32703 * 118.89451 * 5 4 2 32 32 H 1.09003 * 110.32101 * 241.00164 * 5 4 2 33 33 H 1.09010 * 109.46597 * 56.34033 * 8 6 5 34 34 H 1.09000 * 109.47501 * 176.33432 * 8 6 5 35 35 H 1.08997 * 109.47494 * 296.34106 * 8 6 5 36 36 H 1.09000 * 109.46764 * 58.83163 * 10 9 2 37 37 H 1.09004 * 109.46498 * 178.82304 * 10 9 2 38 38 H 1.09000 * 109.46557 * 299.99867 * 14 13 11 39 39 H 1.09000 * 109.46881 * 59.99723 * 14 13 11 40 40 H 0.96995 * 120.00277 * 179.97438 * 19 18 16 41 41 H 1.09009 * 117.49209 * 0.02562 * 24 15 14 42 42 H 1.08996 * 117.50492 * 145.01995 * 24 15 14 43 43 H 1.09007 * 117.49779 * 214.98082 * 25 15 14 44 44 H 1.09004 * 117.49606 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 6 3.3178 -1.5182 -0.7070 6 6 3.4294 -1.1303 0.7831 7 1 4.1078 -0.2861 0.9064 8 6 3.9092 -2.3243 1.6108 9 7 2.0481 -0.7477 1.1746 10 6 2.0569 0.0988 2.3753 11 6 2.9613 1.2827 2.1488 12 8 3.4488 1.4708 1.0593 13 8 3.2255 2.1281 3.1573 14 6 4.1044 3.2468 2.8667 15 6 4.2862 4.0935 4.1279 16 6 5.0000 3.4153 5.2688 17 1 4.4366 2.8618 6.0056 18 6 6.3723 3.5011 5.3720 19 7 7.0517 4.2315 4.5150 20 14 7.2663 2.5801 6.7291 21 1 6.2811 1.8363 7.5547 22 1 8.2293 1.6236 6.1269 23 1 7.9992 3.5479 7.5844 24 6 3.1755 5.0853 4.4794 25 6 4.5158 5.5950 3.9438 26 1 -0.3633 -1.0275 0.0161 27 1 -0.3633 0.4998 -0.8980 28 1 -0.3633 0.5277 0.8818 29 1 1.3236 -1.4863 -1.5775 30 1 2.3400 -0.0820 -2.0193 31 1 3.1861 -2.5953 -0.8093 32 1 4.2039 -1.1923 -1.2517 33 1 4.8573 -2.6853 1.2119 34 1 4.0450 -2.0167 2.6476 35 1 3.1675 -3.1215 1.5625 36 1 1.0451 0.4485 2.5807 37 1 2.4208 -0.4794 3.2247 38 1 5.0734 2.8715 2.5377 39 1 3.6652 3.8588 2.0788 40 1 8.0170 4.2923 4.5877 41 1 2.3148 5.1342 3.8121 42 1 2.9611 5.2474 5.5357 43 1 5.1828 6.0923 4.6481 44 1 4.5377 5.9795 2.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330211778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -55.829168 kcal Electronic energy + Delta-G solvation = -23226.594845 eV Core-core repulsion = 19951.932612 eV Total energy + Delta-G solvation = -3274.662233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70565 -38.61146 -36.69009 -35.25634 -32.60225 -32.46262 -31.95751 -28.48816 -27.53458 -25.94382 -25.03661 -23.80910 -21.32477 -20.97135 -20.32778 -19.80067 -19.25226 -17.19749 -16.46016 -16.01666 -15.84149 -15.37736 -15.11188 -14.67894 -14.44450 -13.91937 -13.66021 -13.24591 -13.05320 -12.71836 -12.41943 -12.19665 -12.09127 -11.99422 -11.63014 -11.58467 -11.39316 -11.01432 -10.96996 -10.88959 -10.77926 -10.61417 -10.59486 -10.47645 -10.34993 -10.22685 -9.77093 -9.56879 -8.94839 -8.48395 -8.39774 -8.14817 -6.08892 -4.15718 2.58735 3.24774 3.31455 3.33919 3.38272 3.87979 4.36412 4.59502 4.74199 5.00218 5.13602 5.19434 5.22292 5.29003 5.44163 5.46385 5.48972 5.52823 5.62933 5.66488 5.73332 5.78392 5.90694 5.95031 5.95716 6.04337 6.12475 6.19593 6.20623 6.26823 6.29968 6.36789 6.47252 6.61121 6.72652 6.88537 6.95433 7.04371 7.18998 7.33686 7.52922 7.83314 8.27270 8.38081 8.87124 9.50527 10.99261 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.004776 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.634406 B = 5861.017931 C = 6606.577431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.036 3.964 7 H 0.087 0.913 8 C -0.138 4.138 9 N -0.479 5.479 10 C 0.046 3.954 11 C 0.423 3.577 12 O -0.520 6.520 13 O -0.337 6.337 14 C 0.116 3.884 15 C 0.030 3.970 16 C -0.487 4.487 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.892 3.108 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.207 4.207 25 C -0.135 4.135 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -9.414 -8.196 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.071 4.071 7 H 0.104 0.896 8 C -0.196 4.196 9 N -0.203 5.203 10 C -0.084 4.084 11 C 0.266 3.734 12 O -0.412 6.412 13 O -0.251 6.251 14 C 0.043 3.957 15 C 0.029 3.971 16 C -0.525 4.525 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.719 3.281 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.244 4.244 25 C -0.172 4.172 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.729 -9.723 -8.391 16.112 hybrid contribution 1.254 0.419 0.416 1.385 sum -8.476 -9.304 -7.976 14.900 Atomic orbital electron populations 1.21751 0.94344 1.02057 1.01291 1.22995 0.95256 0.98764 0.89930 0.89741 1.22245 0.97238 0.98702 0.96964 1.22240 0.97963 1.00101 0.94847 1.23064 0.90516 0.98835 0.94731 0.89565 1.21751 1.00601 0.97548 0.99685 1.65807 1.18567 1.33365 1.02533 1.22198 0.99567 0.89827 0.96808 1.25069 0.80544 0.84678 0.83096 1.90527 1.50887 1.73706 1.26048 1.86576 1.61784 1.36896 1.39810 1.22898 0.91146 0.83975 0.97690 1.18813 0.96894 0.87726 0.93622 1.20426 0.91002 1.32488 1.08600 0.91853 1.25028 0.97595 0.94883 0.96032 1.70021 1.07156 1.38483 1.36241 0.86533 0.79765 0.79827 0.81939 1.19528 1.20946 1.20944 1.23028 0.91884 1.09423 1.00059 1.22494 0.97193 0.98075 0.99460 0.92066 0.92446 0.92917 0.91496 0.91644 0.91471 0.91596 0.92336 0.92749 0.92025 0.86778 0.86573 0.91314 0.94276 0.92991 0.91760 0.90082 0.88864 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.32 37.16 0.35 -1.10 16 2 C 0.04 0.49 2.52 -66.07 -0.17 0.33 16 3 H 0.08 1.32 5.31 -51.93 -0.28 1.05 16 4 C -0.11 -1.31 6.55 -25.35 -0.17 -1.48 16 5 C -0.11 -1.36 6.55 -25.35 -0.17 -1.52 16 6 C 0.04 0.50 2.50 -66.06 -0.16 0.33 16 7 H 0.09 1.47 5.06 -51.93 -0.26 1.21 16 8 C -0.14 -1.67 9.30 37.16 0.35 -1.33 16 9 N -0.48 -6.39 5.02 -215.75 -1.08 -7.47 16 10 C 0.05 0.64 5.95 -4.97 -0.03 0.61 16 11 C 0.42 7.69 6.99 36.00 0.25 7.94 16 12 O -0.52 -10.24 11.16 -18.75 -0.21 -10.45 16 13 O -0.34 -7.17 10.16 -39.25 -0.40 -7.57 16 14 C 0.12 2.71 5.29 37.15 0.20 2.91 16 15 C 0.03 0.74 1.77 -155.66 -0.28 0.47 16 16 C -0.49 -13.24 8.80 -34.44 -0.30 -13.54 16 17 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 18 C 0.07 1.84 5.42 -17.82 -0.10 1.74 16 19 N -0.88 -24.75 12.29 55.43 0.68 -24.07 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 25 C -0.13 -3.16 8.95 -26.69 -0.24 -3.40 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.55 7.47 -51.93 -0.39 0.16 16 29 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.37 7.41 -51.93 -0.38 0.98 16 37 H 0.12 1.51 7.76 -51.93 -0.40 1.10 16 38 H 0.07 1.76 8.13 -51.93 -0.42 1.33 16 39 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 42 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 43 H 0.09 2.34 7.93 -51.93 -0.41 1.93 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -28.84 349.42 -9.04 -37.88 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.54 Total: 3.28 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.73 Total: -12.83 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: -0.40 Total: -31.54 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.61 Total: -18.01 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.84 -9.04 -37.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330211778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.951 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds