Wall clock time and date at job start Tue Mar 31 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 110.36717 * 2 1 4 4 C 1.54377 * 110.41279 * 237.64846 * 2 1 3 5 5 C 1.54261 * 105.06141 * 217.37300 * 4 2 1 6 6 C 1.54378 * 105.05982 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.41156 * 265.07828 * 6 5 4 8 8 C 1.52998 * 110.41315 * 142.75029 * 6 5 4 9 9 N 1.48563 * 110.40697 * 122.47677 * 2 1 3 10 10 C 1.46907 * 110.99715 * 277.81510 * 9 2 1 11 11 C 1.50697 * 109.47395 * 298.82594 * 10 9 2 12 12 O 1.20831 * 120.00127 * 6.33827 * 11 10 9 13 13 O 1.34226 * 120.00033 * 186.34007 * 11 10 9 14 14 C 1.45206 * 117.00078 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.46946 * 179.97438 * 14 13 11 16 16 C 1.50701 * 115.55246 * 65.31077 * 15 14 13 17 17 H 1.08009 * 119.99585 * 269.91872 * 16 15 14 18 18 C 1.37875 * 120.00652 * 89.90845 * 16 15 14 19 19 N 1.31520 * 119.99547 * 3.50948 * 18 16 15 20 20 Si 1.86794 * 120.00578 * 183.50580 * 18 16 15 21 21 H 1.48508 * 109.46969 * 0.02562 * 20 18 16 22 22 H 1.48492 * 109.47193 * 120.00064 * 20 18 16 23 23 H 1.48500 * 109.47179 * 240.00694 * 20 18 16 24 24 C 1.53001 * 117.50425 * 279.63434 * 15 14 13 25 25 C 1.53006 * 117.49754 * 210.97466 * 15 14 13 26 26 H 1.08999 * 109.46861 * 180.89793 * 1 2 3 27 27 H 1.09002 * 109.46958 * 60.89888 * 1 2 3 28 28 H 1.09001 * 109.47143 * 300.89802 * 1 2 3 29 29 H 1.09005 * 110.32135 * 336.26312 * 4 2 1 30 30 H 1.08999 * 110.32389 * 98.37144 * 4 2 1 31 31 H 1.08995 * 110.32703 * 118.89451 * 5 4 2 32 32 H 1.09003 * 110.32101 * 241.00164 * 5 4 2 33 33 H 1.09010 * 109.46597 * 56.34033 * 8 6 5 34 34 H 1.09000 * 109.47501 * 176.33432 * 8 6 5 35 35 H 1.08997 * 109.47494 * 296.34106 * 8 6 5 36 36 H 1.09000 * 109.46764 * 58.83163 * 10 9 2 37 37 H 1.09004 * 109.46498 * 178.82304 * 10 9 2 38 38 H 1.09000 * 109.46557 * 299.99867 * 14 13 11 39 39 H 1.09000 * 109.46881 * 59.99723 * 14 13 11 40 40 H 0.96995 * 120.00277 * 179.97438 * 19 18 16 41 41 H 1.09009 * 117.49209 * 0.02562 * 24 15 14 42 42 H 1.08996 * 117.50492 * 145.01995 * 24 15 14 43 43 H 1.09007 * 117.49779 * 214.98082 * 25 15 14 44 44 H 1.09004 * 117.49606 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7742 -1.2222 5 6 3.3178 -1.5182 -0.7070 6 6 3.4294 -1.1303 0.7831 7 1 4.1078 -0.2861 0.9064 8 6 3.9092 -2.3243 1.6108 9 7 2.0481 -0.7477 1.1746 10 6 2.0569 0.0988 2.3753 11 6 2.9613 1.2827 2.1488 12 8 3.4488 1.4708 1.0593 13 8 3.2255 2.1281 3.1573 14 6 4.1044 3.2468 2.8667 15 6 4.2862 4.0935 4.1279 16 6 5.0000 3.4153 5.2688 17 1 4.4366 2.8618 6.0056 18 6 6.3723 3.5011 5.3720 19 7 7.0517 4.2315 4.5150 20 14 7.2663 2.5801 6.7291 21 1 6.2811 1.8363 7.5547 22 1 8.2293 1.6236 6.1269 23 1 7.9992 3.5479 7.5844 24 6 3.1755 5.0853 4.4794 25 6 4.5158 5.5950 3.9438 26 1 -0.3633 -1.0275 0.0161 27 1 -0.3633 0.4998 -0.8980 28 1 -0.3633 0.5277 0.8818 29 1 1.3236 -1.4863 -1.5775 30 1 2.3400 -0.0820 -2.0193 31 1 3.1861 -2.5953 -0.8093 32 1 4.2039 -1.1923 -1.2517 33 1 4.8573 -2.6853 1.2119 34 1 4.0450 -2.0167 2.6476 35 1 3.1675 -3.1215 1.5625 36 1 1.0451 0.4485 2.5807 37 1 2.4208 -0.4794 3.2247 38 1 5.0734 2.8715 2.5377 39 1 3.6652 3.8588 2.0788 40 1 8.0170 4.2923 4.5877 41 1 2.3148 5.1342 3.8121 42 1 2.9611 5.2474 5.5357 43 1 5.1828 6.0923 4.6481 44 1 4.5377 5.9795 2.9240 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330211778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:18 Heat of formation + Delta-G solvation = -71.523449 kcal Electronic energy + Delta-G solvation = -23227.275400 eV Core-core repulsion = 19951.932612 eV Total energy + Delta-G solvation = -3275.342788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.05582 -39.94599 -38.41704 -36.89871 -34.02643 -33.57591 -33.54377 -29.54478 -29.00907 -27.65588 -26.73872 -24.73697 -23.03038 -22.41851 -21.33105 -21.28244 -20.96423 -18.71653 -18.25649 -17.46129 -17.11508 -16.94948 -16.58678 -16.14941 -15.75129 -15.41280 -15.09440 -14.62726 -14.18467 -13.96153 -13.84458 -13.59600 -13.55082 -13.10120 -12.94859 -12.91764 -12.86902 -12.62121 -12.43859 -12.38410 -12.09769 -11.99196 -11.93315 -11.80573 -11.72187 -11.55733 -11.44129 -11.09912 -10.90089 -10.47801 -10.14543 -9.51716 -8.15805 -6.28444 1.14470 1.37884 1.40792 1.52016 1.81874 2.39645 2.81241 3.11986 3.41342 3.60194 3.75612 3.79945 4.08693 4.12506 4.20784 4.27142 4.33394 4.40459 4.44469 4.48425 4.51955 4.62204 4.68530 4.69929 4.80958 4.83514 4.86023 4.95162 4.95620 5.01554 5.14225 5.17201 5.20849 5.27314 5.32517 5.40496 5.44511 5.58950 5.70064 5.72080 5.83587 5.88955 6.33057 6.76973 6.77823 7.40570 8.92045 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.004776 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.634406 B = 5861.017931 C = 6606.577431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.033 3.967 3 H 0.054 0.946 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.030 3.970 7 H 0.048 0.952 8 C -0.133 4.133 9 N -0.468 5.468 10 C 0.053 3.947 11 C 0.419 3.581 12 O -0.536 6.536 13 O -0.349 6.349 14 C 0.132 3.868 15 C -0.002 4.002 16 C -0.502 4.502 17 H 0.055 0.945 18 C 0.022 3.978 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.278 1.278 24 C -0.179 4.179 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.033 0.967 39 H 0.047 0.953 40 H 0.261 0.739 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 -10.963 -8.230 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.078 4.078 7 H 0.066 0.934 8 C -0.191 4.191 9 N -0.191 5.191 10 C -0.077 4.077 11 C 0.263 3.737 12 O -0.429 6.429 13 O -0.264 6.264 14 C 0.058 3.942 15 C -0.003 4.003 16 C -0.540 4.540 17 H 0.073 0.927 18 C -0.178 4.178 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.204 1.204 24 C -0.216 4.216 25 C -0.175 4.175 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.437 -11.279 -8.432 18.142 hybrid contribution 1.755 0.879 0.361 1.995 sum -9.682 -10.400 -8.071 16.342 Atomic orbital electron populations 1.21714 0.92212 1.02921 1.01964 1.23041 0.96925 0.97179 0.90343 0.92854 1.22276 0.97468 0.98911 0.96334 1.22259 0.98076 1.01332 0.93362 1.23059 0.90011 0.98171 0.96544 0.93408 1.21716 1.01411 0.97135 0.98793 1.65900 1.18005 1.32612 1.02572 1.22452 0.99698 0.87999 0.97580 1.26071 0.80542 0.84869 0.82239 1.90537 1.51567 1.74048 1.26702 1.86582 1.61545 1.36984 1.41273 1.22435 0.90056 0.84599 0.97120 1.18933 0.99097 0.88404 0.93843 1.20656 0.91539 1.32620 1.09161 0.92694 1.25732 0.98325 0.95626 0.98144 1.70123 1.07270 1.39652 1.37748 0.85599 0.78570 0.78679 0.79448 1.18855 1.20904 1.20354 1.23025 0.91664 1.06139 1.00746 1.22392 0.98136 0.97271 0.99701 0.90976 0.91340 0.92822 0.89387 0.91841 0.89506 0.92159 0.91621 0.93645 0.90479 0.84276 0.85375 0.94878 0.93476 0.93030 0.89188 0.89746 0.91043 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.32 71.98 0.67 -1.75 16 2 C 0.03 0.80 2.52 45.06 0.11 0.92 16 3 H 0.05 1.66 5.31 -2.39 -0.01 1.65 16 4 C -0.11 -2.38 6.55 31.49 0.21 -2.18 16 5 C -0.11 -2.53 6.55 31.49 0.21 -2.32 16 6 C 0.03 0.81 2.50 45.06 0.11 0.92 16 7 H 0.05 1.68 5.06 -2.39 -0.01 1.67 16 8 C -0.13 -3.03 9.30 71.98 0.67 -2.36 16 9 N -0.47 -11.71 5.02 -836.49 -4.20 -15.91 16 10 C 0.05 1.40 5.95 85.55 0.51 1.91 16 11 C 0.42 15.29 6.99 71.23 0.50 15.78 16 12 O -0.54 -21.71 11.16 21.95 0.24 -21.46 16 13 O -0.35 -14.98 10.16 -51.38 -0.52 -15.51 16 14 C 0.13 6.29 5.29 71.98 0.38 6.67 16 15 C 0.00 -0.12 1.77 -52.93 -0.09 -0.21 16 16 C -0.50 -27.60 8.80 25.60 0.23 -27.37 16 17 H 0.05 3.03 7.82 -2.91 -0.02 3.01 16 18 C 0.02 1.20 5.42 84.65 0.46 1.66 16 19 N -0.91 -52.14 12.29 21.45 0.26 -51.88 16 20 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C -0.18 -7.63 9.96 30.62 0.30 -7.32 16 25 C -0.14 -6.48 8.95 30.62 0.27 -6.21 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 0.98 7.47 -2.39 -0.02 0.96 16 29 H 0.09 1.51 7.86 -2.38 -0.02 1.49 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.61 7.86 -2.39 -0.02 1.59 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.04 1.10 7.81 -2.39 -0.02 1.08 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.14 3.00 7.41 -2.39 -0.02 2.98 16 37 H 0.13 3.12 7.76 -2.39 -0.02 3.10 16 38 H 0.03 1.77 8.13 -2.39 -0.02 1.75 16 39 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 40 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 42 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.07 3.65 7.93 -2.38 -0.02 3.63 16 44 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -62.76 349.42 3.31 -59.45 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.96 Total: 21.74 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 4.53 Total: -21.86 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: -3.93 Total: -67.79 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.28 Total: -36.97 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.76 3.31 -59.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330211778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.078 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds