Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46851 * 2 1 4 4 N 1.46896 * 109.47207 * 120.00170 * 2 1 3 5 5 C 1.47446 * 110.99912 * 59.15805 * 4 2 1 6 6 C 1.54316 * 107.23296 * 123.25834 * 5 4 2 7 7 C 1.55264 * 103.08715 * 22.20472 * 6 5 4 8 8 C 1.47843 * 111.00088 * 179.97438 * 4 2 1 9 9 H 1.08999 * 110.37356 * 332.58155 * 8 4 2 10 10 C 1.50696 * 110.37170 * 94.80612 * 8 4 2 11 11 O 1.20825 * 119.99992 * 24.25031 * 10 8 4 12 12 O 1.34233 * 120.00088 * 203.97604 * 10 8 4 13 13 C 1.45200 * 116.99750 * 180.68597 * 12 10 8 14 14 C 1.50693 * 112.85469 * 63.19713 * 13 12 10 15 15 H 1.08005 * 120.00000 * 244.50653 * 14 13 12 16 16 C 1.37876 * 120.00231 * 64.50354 * 14 13 12 17 17 N 1.31514 * 120.00305 * 186.27462 * 16 14 13 18 18 Si 1.86807 * 119.99965 * 6.27246 * 16 14 13 19 19 H 1.48493 * 109.46873 * 93.05631 * 18 16 14 20 20 H 1.48500 * 109.47162 * 213.06137 * 18 16 14 21 21 H 1.48501 * 109.46672 * 333.05757 * 18 16 14 22 22 C 1.53783 * 113.61331 * 291.99298 * 13 12 10 23 23 C 1.53961 * 87.01978 * 220.05109 * 22 13 12 24 24 C 1.53779 * 87.10919 * 25.36732 * 23 22 13 25 25 H 1.09000 * 109.46548 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46823 * 299.99930 * 1 2 3 27 27 H 1.09000 * 109.46757 * 59.99909 * 1 2 3 28 28 H 1.08999 * 109.46823 * 240.00070 * 2 1 3 29 29 H 1.09004 * 109.46960 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47729 * 300.00130 * 3 2 1 31 31 H 1.08999 * 109.47350 * 60.00392 * 3 2 1 32 32 H 1.08997 * 109.88805 * 242.66334 * 5 4 2 33 33 H 1.08994 * 109.89131 * 3.85258 * 5 4 2 34 34 H 1.09000 * 110.70987 * 140.66733 * 6 5 4 35 35 H 1.09005 * 110.70426 * 263.72423 * 6 5 4 36 36 H 1.08994 * 111.08478 * 206.39034 * 7 6 5 37 37 H 1.08992 * 110.94482 * 82.53297 * 7 6 5 38 38 H 0.96996 * 119.99990 * 180.02562 * 17 16 14 39 39 H 1.08995 * 113.61887 * 334.57345 * 22 13 12 40 40 H 1.09002 * 113.60888 * 105.47562 * 22 13 12 41 41 H 1.08998 * 113.53901 * 270.81138 * 23 22 13 42 42 H 1.09003 * 113.73795 * 139.94448 * 23 22 13 43 43 H 1.09000 * 113.61342 * 220.08887 * 24 23 22 44 44 H 1.09001 * 113.69251 * 89.19785 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.5306 -2.0827 1.2435 6 6 2.7681 -3.0002 1.3334 7 6 3.8625 -2.0593 1.9058 8 6 3.4977 -0.7128 1.2332 9 1 3.9010 -0.6722 0.2214 10 6 4.0195 0.4401 2.0514 11 8 3.3226 0.9421 2.9013 12 8 5.2606 0.9058 1.8399 13 6 5.7022 2.0083 2.6753 14 6 5.7716 1.6444 4.1360 15 1 5.1200 2.1325 4.8457 16 6 6.6669 0.6883 4.5665 17 7 6.6440 0.2816 5.8170 18 14 7.9126 -0.0293 3.3737 19 1 9.1783 0.7429 3.4558 20 1 8.1745 -1.4481 3.7255 21 1 7.3751 0.0469 1.9915 22 6 4.9556 3.3249 2.4032 23 6 6.3119 4.0346 2.5683 24 6 6.9688 2.7073 2.1537 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.8985 -2.2257 2.1200 33 1 0.9679 -2.3068 0.3374 34 1 2.5820 -3.8332 2.0114 35 1 3.0501 -3.3648 0.3456 36 1 4.8577 -2.3880 1.6067 37 1 3.7862 -1.9876 2.9907 38 1 7.2741 -0.3908 6.1199 39 1 4.5462 3.3945 1.3954 40 1 4.2301 3.5828 3.1747 41 1 6.5282 4.3266 3.5959 42 1 6.4737 4.8432 1.8554 43 1 7.8662 2.4675 2.7241 44 1 7.1116 2.6066 1.0778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344633923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = -51.952019 kcal Electronic energy + Delta-G solvation = -24307.321119 eV Core-core repulsion = 21032.827011 eV Total energy + Delta-G solvation = -3274.494107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02850 -38.79569 -36.83611 -34.34708 -34.24917 -32.30834 -29.80219 -29.11108 -26.84448 -26.53558 -24.91309 -23.65870 -22.34556 -21.26366 -20.23545 -19.22500 -18.53062 -17.24654 -16.32170 -16.08574 -15.32675 -15.17316 -14.73752 -14.61284 -13.94903 -13.80429 -13.51094 -13.14628 -12.94408 -12.76309 -12.41026 -12.22578 -12.02293 -11.74604 -11.56006 -11.34567 -11.25762 -11.09214 -11.02468 -10.91218 -10.81631 -10.75421 -10.61573 -10.52043 -10.12313 -9.91568 -9.76199 -9.27307 -8.92029 -8.69548 -8.50143 -8.11330 -6.17015 -4.22504 3.25685 3.31619 3.40831 3.50171 3.59484 4.33978 4.40701 4.70137 4.81091 4.97747 5.07853 5.13001 5.16126 5.34439 5.38032 5.51921 5.53731 5.55888 5.64983 5.71429 5.76505 5.85907 5.87545 5.91593 5.92681 5.96292 6.02854 6.14948 6.22545 6.30711 6.38437 6.39923 6.43006 6.48222 6.67513 6.87347 6.99007 7.02690 7.22025 7.32807 7.58409 7.92470 8.46870 8.91842 9.20351 9.45328 10.93532 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.007264 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.674808 B = 3853.459545 C = 4704.993322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.150 4.150 4 N -0.504 5.504 5 C 0.046 3.954 6 C -0.140 4.140 7 C -0.118 4.118 8 C 0.078 3.922 9 H 0.074 0.926 10 C 0.467 3.533 11 O -0.470 6.470 12 O -0.375 6.375 13 C 0.203 3.797 14 C -0.502 4.502 15 H 0.084 0.916 16 C 0.084 3.916 17 N -0.880 5.880 18 Si 0.861 3.139 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.235 1.235 22 C -0.144 4.144 23 C -0.125 4.125 24 C -0.134 4.134 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.266 0.734 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -3.136 -13.447 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.207 4.207 4 N -0.230 5.230 5 C -0.081 4.081 6 C -0.179 4.179 7 C -0.156 4.156 8 C -0.031 4.031 9 H 0.092 0.908 10 C 0.306 3.694 11 O -0.354 6.354 12 O -0.294 6.294 13 C 0.169 3.831 14 C -0.539 4.539 15 H 0.102 0.898 16 C -0.121 4.121 17 N -0.517 5.517 18 Si 0.688 3.312 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.157 1.157 22 C -0.182 4.182 23 C -0.163 4.163 24 C -0.171 4.171 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.326 -2.759 -12.612 14.844 hybrid contribution 1.076 -0.893 -1.055 1.751 sum -6.249 -3.651 -13.667 15.465 Atomic orbital electron populations 1.21883 0.94127 1.01770 1.02283 1.21800 0.95836 0.95447 0.90308 1.21927 1.01207 0.95226 1.02353 1.63143 1.06255 1.14988 1.38614 1.22828 0.97016 0.86595 1.01677 1.22820 0.95392 0.98459 1.01205 1.22664 0.98999 0.91805 1.02100 1.22093 0.88604 0.93918 0.98531 0.90836 1.22431 0.80880 0.83325 0.82744 1.90583 1.57798 1.56575 1.30432 1.86535 1.30713 1.51104 1.61006 1.21569 0.90894 0.80300 0.90333 1.20801 1.21028 1.23168 0.88926 0.89792 1.24994 0.96995 0.95130 0.94972 1.69938 1.36171 1.29592 1.15991 0.87115 0.81685 0.78014 0.84423 1.20580 1.21867 1.15749 1.23332 0.96827 0.97880 1.00126 1.22522 0.97161 0.95141 1.01431 1.23274 0.98131 0.96197 0.99508 0.92703 0.91451 0.92401 0.94437 0.92738 0.92451 0.90992 0.90170 0.92402 0.90334 0.91472 0.89997 0.89383 0.92448 0.92021 0.91211 0.89605 0.92534 0.91444 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.05 37.16 0.34 -1.27 16 2 C 0.07 1.00 2.27 -67.71 -0.15 0.85 16 3 C -0.15 -2.18 8.49 37.15 0.32 -1.87 16 4 N -0.50 -8.01 4.36 -216.87 -0.94 -8.96 16 5 C 0.05 0.59 6.14 -2.84 -0.02 0.57 16 6 C -0.14 -1.72 6.94 -24.84 -0.17 -1.89 16 7 C -0.12 -1.92 6.49 -24.54 -0.16 -2.08 16 8 C 0.08 1.39 2.34 -67.36 -0.16 1.23 16 9 H 0.07 1.19 7.61 -51.93 -0.39 0.79 16 10 C 0.47 10.52 4.79 36.00 0.17 10.69 16 11 O -0.47 -12.08 15.10 -18.75 -0.28 -12.36 16 12 O -0.38 -8.90 8.12 -39.27 -0.32 -9.22 16 13 C 0.20 4.92 0.23 -90.96 -0.02 4.90 16 14 C -0.50 -14.34 7.64 -34.44 -0.26 -14.61 16 15 H 0.08 2.68 8.05 -52.48 -0.42 2.26 16 16 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 17 N -0.88 -26.89 13.96 55.43 0.77 -26.11 16 18 Si 0.86 21.41 24.60 -169.99 -4.18 17.23 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.23 -5.59 5.61 56.52 0.32 -5.28 16 22 C -0.14 -3.09 6.63 -25.82 -0.17 -3.26 16 23 C -0.13 -2.42 7.81 -25.83 -0.20 -2.62 16 24 C -0.13 -2.85 6.06 -25.92 -0.16 -3.01 16 25 H 0.05 0.55 6.45 -51.93 -0.34 0.21 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.05 0.88 6.17 -51.93 -0.32 0.56 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.61 6.29 -51.93 -0.33 0.29 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.67 8.05 -51.93 -0.42 1.25 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.59 8.09 -51.93 -0.42 1.17 16 41 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.50 5.71 -51.93 -0.30 1.20 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -32.35 336.81 -8.27 -40.62 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.65 Total: 3.73 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.75 Total: -10.01 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.17 Total: -35.07 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.60 Total: -21.58 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.18 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.35 -8.27 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344633923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.329 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds