Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47395 * 2 1 4 4 N 1.46905 * 109.47004 * 120.00104 * 2 1 3 5 5 C 1.48561 * 110.99471 * 289.68785 * 4 2 1 6 6 C 1.54387 * 104.59388 * 200.95955 * 5 4 2 7 7 C 1.54265 * 105.05838 * 23.85516 * 6 5 4 8 8 C 1.48558 * 110.99907 * 174.27378 * 4 2 1 9 9 H 1.09001 * 110.41589 * 40.25742 * 8 4 2 10 10 C 1.50703 * 110.50900 * 277.86222 * 8 4 2 11 11 O 1.20826 * 120.00182 * 1.72291 * 10 8 4 12 12 O 1.34227 * 120.00358 * 181.71918 * 10 8 4 13 13 C 1.45199 * 117.00450 * 184.89310 * 12 10 8 14 14 C 1.50701 * 112.84725 * 54.10731 * 13 12 10 15 15 H 1.08002 * 120.00223 * 241.42602 * 14 13 12 16 16 C 1.37876 * 120.00022 * 61.42719 * 14 13 12 17 17 N 1.31519 * 120.00342 * 4.10688 * 16 14 13 18 18 Si 1.86804 * 120.00182 * 184.11222 * 16 14 13 19 19 H 1.48497 * 109.46935 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47328 * 119.99738 * 18 16 14 21 21 H 1.48501 * 109.47089 * 240.00020 * 18 16 14 22 22 C 1.53782 * 113.61364 * 282.80363 * 13 12 10 23 23 C 1.53779 * 87.07691 * 220.01556 * 22 13 12 24 24 C 1.53777 * 113.61500 * 185.30141 * 13 12 10 25 25 H 1.08998 * 109.47532 * 299.99995 * 1 2 3 26 26 H 1.09000 * 109.46866 * 60.00456 * 1 2 3 27 27 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47176 * 239.99603 * 2 1 3 29 29 H 1.08997 * 109.47543 * 171.64660 * 3 2 1 30 30 H 1.09002 * 109.47052 * 291.64712 * 3 2 1 31 31 H 1.09000 * 109.47018 * 51.64426 * 3 2 1 32 32 H 1.08996 * 110.41648 * 82.18455 * 5 4 2 33 33 H 1.09002 * 110.41376 * 319.73701 * 5 4 2 34 34 H 1.08996 * 110.32322 * 264.95947 * 6 5 4 35 35 H 1.09000 * 110.41110 * 142.79035 * 6 5 4 36 36 H 1.08997 * 110.32313 * 241.10854 * 7 6 5 37 37 H 1.08994 * 110.32759 * 118.89487 * 7 6 5 38 38 H 0.96993 * 120.00502 * 185.00708 * 17 16 14 39 39 H 1.08995 * 113.61591 * 334.56446 * 22 13 12 40 40 H 1.08997 * 113.60889 * 105.46836 * 22 13 12 41 41 H 1.09005 * 113.61632 * 270.88272 * 23 22 13 42 42 H 1.09004 * 113.61278 * 139.98222 * 23 22 13 43 43 H 1.08998 * 113.61872 * 254.53101 * 24 13 12 44 44 H 1.08998 * 113.61791 * 25.43715 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.7565 0.1096 2.4219 6 6 2.7549 -0.4342 3.4664 7 6 3.9007 -1.0545 2.6405 8 6 3.4981 -0.8334 1.1666 9 1 3.9581 0.0757 0.7792 10 6 3.8969 -2.0210 0.3290 11 8 3.0501 -2.6813 -0.2250 12 8 5.1928 -2.3455 0.1984 13 6 5.5120 -3.4328 -0.7094 14 6 4.9482 -3.2258 -2.0916 15 1 4.2347 -3.9291 -2.4947 16 6 5.3435 -2.1384 -2.8415 17 7 6.2718 -1.3266 -2.3843 18 14 4.5604 -1.8180 -4.5069 19 1 3.5510 -2.8697 -4.7898 20 1 3.9002 -0.4879 -4.4958 21 1 5.6078 -1.8420 -5.5593 22 6 5.2234 -4.8265 -0.1268 23 6 6.5331 -5.2875 -0.7877 24 6 6.9990 -3.8244 -0.7029 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1197 1.4461 0.1493 30 1 1.8037 1.9114 -0.9552 31 1 1.5599 1.9976 0.8059 32 1 0.7317 -0.0403 2.7617 33 1 1.9439 1.1663 2.2310 34 1 2.2790 -1.1951 4.0848 35 1 3.1331 0.3767 4.0890 36 1 3.9871 -2.1200 2.8535 37 1 4.8409 -0.5470 2.8564 38 1 6.4985 -0.5225 -2.8771 39 1 5.2491 -4.8583 0.9624 40 1 4.3340 -5.2985 -0.5441 41 1 6.4042 -5.6462 -1.8089 42 1 7.1180 -5.9685 -0.1694 43 1 7.5431 -3.4876 -1.5853 44 1 7.5103 -3.5823 0.2288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344633931.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = -54.971439 kcal Electronic energy + Delta-G solvation = -24207.915244 eV Core-core repulsion = 20933.290205 eV Total energy + Delta-G solvation = -3274.625039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.87598 -38.58662 -36.65524 -34.25414 -33.92743 -32.26441 -29.44796 -28.76210 -27.06368 -26.12329 -24.48250 -23.70400 -22.49798 -21.36937 -19.84781 -18.79806 -18.50536 -16.92502 -16.25201 -15.88104 -15.09030 -14.78975 -14.47698 -14.36039 -14.04281 -13.76748 -13.52157 -13.24231 -12.99573 -12.57239 -12.35404 -11.97538 -11.58636 -11.55457 -11.42924 -11.21363 -11.10209 -11.04009 -10.99919 -10.86650 -10.81211 -10.52206 -10.32924 -10.21950 -10.16691 -9.84013 -9.72877 -9.09578 -8.83653 -8.49878 -8.37294 -8.07803 -6.10734 -4.19017 3.24314 3.33310 3.40944 3.61207 3.80277 4.37032 4.53070 4.81082 4.91801 5.09194 5.18293 5.25041 5.31668 5.49382 5.55516 5.63628 5.71754 5.75192 5.79533 5.84436 5.92160 5.95500 5.96910 6.00234 6.01955 6.19451 6.23425 6.27823 6.30512 6.44588 6.52019 6.53744 6.57673 6.70551 6.96294 7.10935 7.15674 7.31889 7.40078 7.64242 7.79853 7.99285 8.46939 8.84513 9.38647 9.51896 10.94383 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.007572 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.995014 B = 3696.706175 C = 4762.693991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 C -0.189 4.189 4 N -0.480 5.480 5 C 0.024 3.976 6 C -0.123 4.123 7 C -0.108 4.108 8 C 0.061 3.939 9 H 0.082 0.918 10 C 0.473 3.527 11 O -0.488 6.488 12 O -0.353 6.353 13 C 0.242 3.758 14 C -0.503 4.503 15 H 0.067 0.933 16 C 0.074 3.926 17 N -0.866 5.866 18 Si 0.888 3.112 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.159 4.159 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 4.302 8.927 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.247 4.247 4 N -0.204 5.204 5 C -0.103 4.103 6 C -0.161 4.161 7 C -0.147 4.147 8 C -0.048 4.048 9 H 0.100 0.900 10 C 0.313 3.687 11 O -0.374 6.374 12 O -0.269 6.269 13 C 0.208 3.792 14 C -0.541 4.541 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.503 5.503 18 Si 0.715 3.285 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.197 4.197 23 C -0.170 4.170 24 C -0.145 4.145 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.096 0.904 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.497 3.644 8.673 10.896 hybrid contribution -0.044 1.170 -1.111 1.614 sum -5.541 4.814 7.562 10.538 Atomic orbital electron populations 1.21714 0.94202 1.02420 1.00822 1.21848 0.95978 0.92132 0.94558 1.22519 1.01722 0.98339 1.02116 1.65261 1.09609 1.43769 1.01788 1.23226 0.99944 0.96357 0.90819 1.22306 0.95996 1.00269 0.97535 1.22166 0.98342 1.02289 0.91866 1.22296 0.89696 0.96820 0.96018 0.90019 1.22286 0.82385 0.84478 0.79540 1.90542 1.52052 1.50946 1.43852 1.86415 1.25615 1.53994 1.60917 1.21098 0.92104 0.78683 0.87319 1.20984 1.25057 1.11017 0.97007 0.91510 1.25019 0.93881 0.96322 0.97884 1.70042 1.28473 1.12376 1.39383 0.86592 0.79462 0.78463 0.83999 1.19396 1.20903 1.20871 1.23528 0.97584 1.00202 0.98369 1.22531 0.97443 0.96658 1.00358 1.22902 0.97318 0.93350 1.00930 0.93193 0.92630 0.91673 0.88931 0.92196 0.92048 0.92307 0.90150 0.92958 0.91056 0.91369 0.90708 0.90438 0.92947 0.92201 0.92078 0.90344 0.93093 0.90418 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.25 37.16 0.34 -1.51 16 2 C 0.06 1.05 2.78 -67.71 -0.19 0.86 16 3 C -0.19 -2.68 8.20 37.16 0.30 -2.38 16 4 N -0.48 -8.15 4.64 -215.59 -1.00 -9.15 16 5 C 0.02 0.31 5.51 -2.18 -0.01 0.30 16 6 C -0.12 -1.49 7.00 -25.34 -0.18 -1.67 16 7 C -0.11 -1.65 6.53 -25.34 -0.17 -1.81 16 8 C 0.06 1.15 2.65 -67.22 -0.18 0.97 16 9 H 0.08 1.55 5.88 -51.93 -0.31 1.24 16 10 C 0.47 11.24 6.54 36.01 0.24 11.47 16 11 O -0.49 -12.84 14.22 -18.75 -0.27 -13.11 16 12 O -0.35 -8.95 9.95 -39.25 -0.39 -9.34 16 13 C 0.24 6.16 0.48 -90.96 -0.04 6.12 16 14 C -0.50 -14.00 6.49 -34.44 -0.22 -14.22 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.07 2.03 5.35 -17.82 -0.10 1.94 16 17 N -0.87 -24.22 12.45 55.43 0.69 -23.53 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.16 -3.59 7.11 -25.92 -0.18 -3.77 16 23 C -0.13 -2.72 7.80 -25.92 -0.20 -2.92 16 24 C -0.11 -2.49 7.17 -25.92 -0.19 -2.68 16 25 H 0.05 0.59 7.27 -51.93 -0.38 0.22 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.90 7.37 -51.93 -0.38 1.52 16 29 H 0.06 0.92 6.01 -51.93 -0.31 0.61 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.71 6.42 -51.93 -0.33 0.37 16 32 H 0.08 0.95 7.77 -51.93 -0.40 0.55 16 33 H 0.05 0.63 5.43 -51.93 -0.28 0.35 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.21 7.85 -51.93 -0.41 0.80 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.42 8.09 -51.93 -0.42 1.00 16 41 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.95 7.64 -51.93 -0.40 1.55 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -30.46 342.25 -9.00 -39.46 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.39 Total: 3.22 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.77 Total: -9.29 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.31 Total: -32.68 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.66 Total: -22.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.46 -9.00 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344633931.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.513 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds