Wall clock time and date at job start Tue Mar 31 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99806 * 2 1 4 4 H 1.09007 * 109.47004 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47147 * 119.99936 * 3 2 1 6 6 C 1.53005 * 109.46976 * 294.99908 * 5 3 2 7 7 C 1.52995 * 109.47193 * 239.99954 * 3 2 1 8 8 C 1.50706 * 109.47217 * 64.99943 * 7 3 2 9 9 O 1.20829 * 119.99623 * 0.02562 * 8 7 3 10 10 O 1.34224 * 119.99974 * 180.02562 * 8 7 3 11 11 C 1.45208 * 116.99831 * 180.02562 * 10 8 7 12 12 C 1.53349 * 109.41474 * 270.12528 * 11 10 8 13 13 C 1.53194 * 109.14721 * 178.67523 * 12 11 10 14 14 N 1.46924 * 108.89447 * 54.57940 * 13 12 11 15 15 C 1.36930 * 120.63300 * 126.34039 * 14 13 12 16 16 H 1.07996 * 120.00049 * 331.82927 * 15 14 13 17 17 C 1.38816 * 120.00324 * 151.82723 * 15 14 13 18 18 N 1.31624 * 119.99356 * 343.06571 * 17 15 14 19 19 Si 1.86793 * 120.00395 * 163.06593 * 17 15 14 20 20 H 1.48500 * 109.46960 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47338 * 119.99948 * 19 17 15 22 22 H 1.48503 * 109.47085 * 239.99957 * 19 17 15 23 23 C 1.46929 * 118.73622 * 306.31812 * 14 13 12 24 24 C 1.53036 * 109.45759 * 149.99881 * 11 10 8 25 25 H 1.08001 * 119.99581 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99923 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47217 * 54.99477 * 5 3 2 29 29 H 1.08994 * 109.47153 * 175.00158 * 5 3 2 30 30 H 1.08998 * 109.47275 * 299.99715 * 6 5 3 31 31 H 1.09006 * 109.47028 * 60.00537 * 6 5 3 32 32 H 1.09002 * 109.46837 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47139 * 305.00409 * 7 3 2 34 34 H 1.08999 * 109.47201 * 184.99755 * 7 3 2 35 35 H 1.09000 * 109.46006 * 30.02423 * 11 10 8 36 36 H 1.08999 * 109.68685 * 58.71204 * 12 11 10 37 37 H 1.08997 * 109.47481 * 298.51094 * 12 11 10 38 38 H 1.08999 * 109.58554 * 294.71486 * 13 12 11 39 39 H 1.09001 * 109.58356 * 174.43691 * 13 12 11 40 40 H 0.96997 * 119.99488 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58736 * 173.39352 * 23 14 13 42 42 H 1.08995 * 109.58640 * 293.68128 * 23 14 13 43 43 H 1.08993 * 109.50017 * 61.43659 * 24 11 10 44 44 H 1.08996 * 109.50185 * 301.33306 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0563 1.4308 2.4953 7 6 2.9431 1.3862 -1.2492 8 6 2.0697 1.4301 -2.4766 9 8 0.8671 1.4000 -2.3637 10 8 2.6279 1.5025 -3.6952 11 6 1.7256 1.5418 -4.8322 12 6 1.4350 0.1112 -5.3020 13 6 0.4570 0.1582 -6.4802 14 7 1.0078 1.0368 -7.5211 15 6 1.1482 0.5908 -8.8081 16 1 1.3012 -0.4606 -9.0016 17 6 1.0938 1.4901 -9.8642 18 7 0.5858 2.6904 -9.6808 19 14 1.7415 0.9968 -11.5453 20 1 2.2574 -0.3945 -11.4883 21 1 0.6438 1.0778 -12.5420 22 1 2.8390 1.9153 -11.9420 23 6 1.4047 2.4032 -7.1548 24 6 2.3733 2.3344 -5.9698 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.5905 0.5105 1.2952 29 1 3.5539 2.2879 1.2056 30 1 1.4089 2.3064 2.4494 31 1 1.4455 0.5290 2.5390 32 1 2.6830 1.4890 3.3853 33 1 3.5905 0.5106 -1.2951 34 1 3.5539 2.2879 -1.2056 35 1 0.7928 2.0235 -4.5390 36 1 0.9940 -0.4609 -4.4858 37 1 2.3639 -0.3629 -5.6190 38 1 -0.5031 0.5487 -6.1428 39 1 0.3219 -0.8455 -6.8831 40 1 0.5475 3.3187 -10.4188 41 1 1.8973 2.8802 -8.0021 42 1 0.5217 2.9775 -6.8748 43 1 3.2933 1.8394 -6.2803 44 1 2.6005 3.3437 -5.6267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347572394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:27 Heat of formation + Delta-G solvation = -67.850388 kcal Electronic energy + Delta-G solvation = -22527.311102 eV Core-core repulsion = 19252.127590 eV Total energy + Delta-G solvation = -3275.183512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.37774 -37.94858 -36.80314 -35.58688 -32.70606 -31.91599 -30.85815 -30.23701 -29.54457 -25.73197 -24.69594 -22.41563 -22.10099 -21.79489 -20.48080 -19.64725 -19.27414 -17.33633 -16.96604 -16.08768 -15.90048 -15.07550 -14.86009 -14.57969 -14.27114 -13.91143 -13.64063 -13.49485 -13.19191 -12.94316 -12.73813 -12.46869 -12.28798 -12.09022 -11.60070 -11.50538 -11.41631 -11.18999 -11.06128 -11.00098 -10.76382 -10.70130 -10.67599 -10.42074 -10.20164 -10.14401 -9.88104 -9.64785 -9.41455 -9.23640 -8.50253 -6.73079 -5.82320 -3.24894 2.33632 2.50027 2.97917 3.36384 3.44177 3.46685 4.47589 4.53107 4.57230 4.72263 5.02056 5.04688 5.17988 5.27125 5.28113 5.30629 5.37602 5.44491 5.47988 5.54909 5.62290 5.67465 5.72870 5.76864 5.87737 5.99800 6.02503 6.08183 6.24054 6.42609 6.43754 6.52154 6.59711 6.64596 6.73189 6.83356 6.90142 7.01272 7.28858 7.58269 7.77660 8.08549 8.41489 9.17376 9.80161 10.37033 11.26969 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046022 B = 0.003177 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.259061 B = 8812.552238 C = 9019.680356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.158 4.158 3 C -0.049 4.049 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.109 4.109 8 C 0.454 3.546 9 O -0.503 6.503 10 O -0.361 6.361 11 C 0.099 3.901 12 C -0.145 4.145 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.174 3.826 24 C -0.135 4.135 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.254 0.746 41 H 0.096 0.904 42 H 0.022 0.978 43 H 0.066 0.934 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.303 -2.104 20.711 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.176 4.176 3 C -0.067 4.067 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.147 4.147 8 C 0.296 3.704 9 O -0.391 6.391 10 O -0.278 6.278 11 C 0.045 3.955 12 C -0.184 4.184 13 C 0.022 3.978 14 N -0.316 5.316 15 C -0.382 4.382 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.048 3.952 24 C -0.175 4.175 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.899 -1.992 20.554 21.223 hybrid contribution 0.179 -0.222 -0.972 1.013 sum 5.078 -2.215 19.582 20.350 Atomic orbital electron populations 1.23741 0.95908 1.01489 0.98648 1.22661 0.96063 0.97088 1.01836 1.20245 0.96705 0.97319 0.92440 0.89906 1.21523 0.97823 1.02159 0.93753 1.21760 0.99832 1.02205 0.97039 1.21434 0.98146 1.05488 0.89605 1.23568 0.88479 0.72839 0.85501 1.90651 1.16246 1.45020 1.87201 1.86549 1.42962 1.82947 1.15348 1.22957 0.92365 0.97914 0.82225 1.22495 1.01583 0.95006 0.99327 1.20853 0.93093 0.95444 0.88396 1.44123 1.71563 1.10576 1.05296 1.19238 1.43398 0.93640 0.81972 0.91490 1.25076 0.99608 0.97098 0.97897 1.70033 1.46299 1.07049 1.31395 0.86198 0.78376 0.77998 0.84058 1.20215 1.21690 1.21497 1.20809 0.94117 0.86636 0.93665 1.22441 1.01433 0.98159 0.95422 0.89049 0.88558 0.87883 0.91661 0.91636 0.92773 0.92350 0.92868 0.87953 0.87868 0.90460 0.92691 0.91508 0.96111 0.92191 0.93580 0.88604 0.96018 0.91525 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 13.23 29.01 0.38 -1.42 16 2 C -0.16 -1.66 6.76 -36.03 -0.24 -1.90 16 3 C -0.05 -0.46 1.82 -91.77 -0.17 -0.63 16 4 H 0.08 0.90 7.60 -51.92 -0.39 0.50 16 5 C -0.12 -0.83 5.39 -26.73 -0.14 -0.97 16 6 C -0.15 -1.06 9.73 37.16 0.36 -0.70 16 7 C -0.11 -1.10 5.28 -27.88 -0.15 -1.25 16 8 C 0.45 6.76 7.68 36.01 0.28 7.04 16 9 O -0.50 -8.70 13.40 -18.75 -0.25 -8.96 16 10 O -0.36 -6.08 9.88 -39.24 -0.39 -6.46 16 11 C 0.10 1.88 2.42 -26.53 -0.06 1.81 16 12 C -0.14 -2.77 5.75 -26.45 -0.15 -2.92 16 13 C 0.15 3.26 6.50 -3.71 -0.02 3.23 16 14 N -0.59 -15.10 2.99 -172.31 -0.52 -15.62 16 15 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 16 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.19 11.20 55.49 0.62 -25.57 16 19 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.17 4.19 5.30 -3.70 -0.02 4.17 16 24 C -0.14 -2.69 5.74 -26.61 -0.15 -2.84 16 25 H 0.09 0.94 8.06 -52.49 -0.42 0.51 16 26 H 0.10 1.14 7.83 -52.49 -0.41 0.73 16 27 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.44 7.38 -51.93 -0.38 0.05 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.56 7.16 -51.93 -0.37 1.19 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.27 7.93 -51.93 -0.41 0.85 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.10 2.54 6.06 -51.93 -0.31 2.23 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -30.42 352.44 -8.33 -38.75 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.75 Total: -0.54 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.32 Total: -3.54 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.11 Total: -41.19 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.64 Total: -15.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.42 -8.33 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347572394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.098 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds