Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29447 * 117.95864 * 2 1 4 4 C 1.50074 * 124.07490 * 179.52796 * 3 2 1 5 5 H 1.08995 * 109.35504 * 257.08738 * 4 3 2 6 6 C 1.52996 * 109.35618 * 137.36255 * 4 3 2 7 7 C 1.53032 * 110.13655 * 17.16994 * 4 3 2 8 8 C 1.53395 * 108.43154 * 310.53330 * 7 4 3 9 9 H 1.08996 * 109.81164 * 307.66319 * 8 7 4 10 10 C 1.53000 * 109.64174 * 187.13489 * 8 7 4 11 11 N 1.46504 * 109.46638 * 176.05640 * 10 8 7 12 12 C 1.36935 * 119.99805 * 95.26088 * 11 10 8 13 13 H 1.08004 * 120.00050 * 214.72316 * 12 11 10 14 14 C 1.38814 * 120.00493 * 34.72406 * 12 11 10 15 15 N 1.31619 * 120.00119 * 212.45598 * 14 12 11 16 16 Si 1.86802 * 119.99646 * 32.45454 * 14 12 11 17 17 H 1.48498 * 109.47070 * 95.15790 * 16 14 12 18 18 H 1.48497 * 109.47395 * 335.15857 * 16 14 12 19 19 H 1.48502 * 109.46907 * 215.15843 * 16 14 12 20 20 C 1.46496 * 119.99944 * 275.25548 * 11 10 8 21 21 C 1.53007 * 109.47065 * 264.82503 * 20 11 10 22 22 C 1.50699 * 109.46827 * 177.88632 * 21 20 11 23 23 O 1.20827 * 120.00422 * 359.97438 * 22 21 20 24 24 O 1.34231 * 119.99829 * 179.97438 * 22 21 20 25 25 C 1.50069 * 117.96731 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47072 * 269.97205 * 1 2 3 27 27 H 1.08997 * 109.47630 * 29.97912 * 1 2 3 28 28 H 1.09009 * 109.46872 * 149.97605 * 1 2 3 29 29 H 1.07996 * 117.96469 * 359.55967 * 3 2 1 30 30 H 1.09000 * 109.47171 * 59.99985 * 6 4 3 31 31 H 1.09004 * 109.46815 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47449 * 300.00144 * 6 4 3 33 33 H 1.09009 * 109.63770 * 190.85543 * 7 4 3 34 34 H 1.09004 * 109.66163 * 70.22305 * 7 4 3 35 35 H 1.08993 * 109.47064 * 56.05585 * 10 8 7 36 36 H 1.08998 * 109.47075 * 296.05381 * 10 8 7 37 37 H 0.97000 * 119.99988 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.47350 * 24.82433 * 20 11 10 39 39 H 1.09002 * 109.47329 * 144.82446 * 20 11 10 40 40 H 1.08999 * 109.46983 * 297.88156 * 21 20 11 41 41 H 1.08994 * 109.47197 * 57.88163 * 21 20 11 42 42 H 0.96707 * 116.99907 * 180.02562 * 24 22 21 43 43 H 1.09006 * 109.35376 * 76.90599 * 25 2 1 44 44 H 1.08998 * 109.35355 * 317.32329 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 3.6060 1.3033 0.0102 5 1 3.9334 1.5742 1.0140 6 6 4.0042 2.4094 -0.9689 7 6 4.2791 -0.0071 -0.4040 8 6 3.6705 -1.1473 0.4223 9 1 3.7174 -0.9007 1.4829 10 6 4.4435 -2.4415 0.1605 11 7 3.9199 -3.5054 1.0209 12 6 2.9694 -4.3672 0.5426 13 1 2.2019 -4.7448 1.2020 14 6 2.9921 -4.7557 -0.7899 15 7 1.8651 -5.0087 -1.4210 16 14 4.6222 -4.9192 -1.6874 17 1 5.0743 -6.3329 -1.6389 18 1 5.6360 -4.0527 -1.0343 19 1 4.4522 -4.5021 -3.1024 20 6 4.4134 -3.6472 2.3929 21 6 5.5401 -4.6819 2.4252 22 6 6.0827 -4.7900 3.8270 23 8 5.6165 -4.1091 4.7095 24 8 7.0840 -5.6428 4.0951 25 6 2.2107 -1.3254 -0.0006 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3634 0.8901 -0.5135 28 1 -0.3633 -0.8899 -0.5143 29 1 1.5088 2.0379 -0.0073 30 1 3.5352 3.3465 -0.6688 31 1 5.0878 2.5274 -0.9626 32 1 3.6732 2.1427 -1.9726 33 1 5.3502 0.0542 -0.2107 34 1 4.1050 -0.1897 -1.4644 35 1 5.4997 -2.2843 0.3787 36 1 4.3272 -2.7290 -0.8845 37 1 1.8810 -5.2798 -2.3522 38 1 4.7916 -2.6872 2.7441 39 1 3.5997 -3.9758 3.0396 40 1 5.1529 -5.6507 2.1098 41 1 6.3375 -4.3720 1.7498 42 1 7.3984 -5.6773 5.0090 43 1 2.1744 -1.7533 -1.0025 44 1 1.7124 -1.9993 0.6962 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594109004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = -80.790634 kcal Electronic energy + Delta-G solvation = -23123.252540 eV Core-core repulsion = 19847.507897 eV Total energy + Delta-G solvation = -3275.744643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.90921 -38.82603 -36.31749 -35.72234 -33.10902 -32.29972 -32.03671 -29.73861 -26.58968 -26.02919 -25.42917 -24.95966 -21.80622 -20.81448 -20.51918 -19.51388 -17.82669 -17.27456 -16.64445 -16.13509 -15.70426 -15.19372 -14.88658 -14.29259 -13.79759 -13.67587 -13.43234 -13.28580 -13.06646 -12.87959 -12.30908 -12.21540 -12.18736 -11.99060 -11.85213 -11.60978 -11.35791 -11.27753 -11.15989 -11.05938 -10.77271 -10.58858 -10.42102 -10.24601 -10.21806 -9.97874 -9.59654 -9.53737 -9.38180 -8.49514 -8.20660 -6.93406 -6.10438 -3.38333 2.53456 2.74727 3.30439 3.40049 3.44676 3.48879 4.50024 4.87501 5.06636 5.17078 5.26074 5.37174 5.50327 5.54055 5.64923 5.66005 5.72632 5.81288 5.92707 5.95761 5.99103 6.06502 6.07375 6.16703 6.19498 6.28387 6.32812 6.39914 6.44730 6.48405 6.52563 6.63533 6.67370 6.75219 6.77647 6.90563 7.14490 7.19254 7.23562 7.63235 7.96769 8.17136 8.33094 8.94433 9.67688 10.08992 11.04618 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.006124 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.205010 B = 4571.396265 C = 5529.371534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C -0.183 4.183 4 C -0.053 4.053 5 H 0.069 0.931 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.101 4.101 9 H 0.061 0.939 10 C 0.154 3.846 11 N -0.596 5.596 12 C -0.275 4.275 13 H 0.078 0.922 14 C 0.049 3.951 15 N -0.878 5.878 16 Si 0.841 3.159 17 H -0.292 1.292 18 H -0.260 1.260 19 H -0.294 1.294 20 C 0.163 3.837 21 C -0.138 4.138 22 C 0.480 3.520 23 O -0.524 6.524 24 O -0.525 6.525 25 C -0.063 4.063 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.263 0.737 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.399 0.601 43 H 0.075 0.925 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 8.217 3.781 10.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.071 4.071 5 H 0.087 0.913 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.122 4.122 9 H 0.080 0.920 10 C 0.028 3.972 11 N -0.317 5.317 12 C -0.403 4.403 13 H 0.096 0.904 14 C -0.153 4.153 15 N -0.517 5.517 16 Si 0.669 3.331 17 H -0.219 1.219 18 H -0.185 1.185 19 H -0.221 1.221 20 C 0.036 3.964 21 C -0.179 4.179 22 C 0.323 3.677 23 O -0.413 6.413 24 O -0.336 6.336 25 C -0.099 4.099 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.257 0.743 43 H 0.093 0.907 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.061 8.370 3.435 10.367 hybrid contribution 1.132 -0.320 -0.102 1.181 sum 6.193 8.050 3.333 10.689 Atomic orbital electron populations 1.20947 0.93360 1.01936 1.01591 1.21288 0.95485 0.96085 0.97462 1.21706 0.95321 0.96654 1.06466 1.19899 0.93095 0.95368 0.98780 0.91298 1.21785 1.00547 0.97888 0.99531 1.21721 0.98707 0.94211 1.00282 1.21781 0.96174 0.95401 0.98826 0.92024 1.21269 0.93952 0.86876 0.95079 1.44180 1.46154 1.31259 1.10073 1.18649 1.03601 1.23281 0.94753 0.90419 1.25360 0.95743 0.97584 0.96606 1.70028 1.25473 1.45854 1.10332 0.87530 0.88330 0.78237 0.79050 1.21932 1.18463 1.22084 1.20759 0.93076 0.94772 0.87821 1.22437 1.01294 1.05960 0.88205 1.24221 0.75672 0.75036 0.92776 1.90671 1.58332 1.43381 1.48904 1.84644 1.51064 1.60926 1.36983 1.20291 0.94025 0.92519 1.03104 0.91977 0.92913 0.91492 0.89093 0.93220 0.93018 0.92795 0.92547 0.92116 0.94793 0.92536 0.92753 0.93066 0.92395 0.87417 0.88823 0.74301 0.90701 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.87 36.00 0.36 -1.47 16 2 C -0.10 -1.73 5.84 -100.94 -0.59 -2.32 16 3 C -0.18 -2.78 8.61 -35.90 -0.31 -3.09 16 4 C -0.05 -0.75 2.97 -92.06 -0.27 -1.02 16 5 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.14 -1.67 9.14 37.16 0.34 -1.33 16 7 C -0.11 -1.73 4.60 -26.51 -0.12 -1.86 16 8 C -0.10 -1.83 2.45 -90.40 -0.22 -2.05 16 9 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 10 C 0.15 3.09 3.26 -4.04 -0.01 3.08 16 11 N -0.60 -12.83 1.94 -173.24 -0.34 -13.17 16 12 C -0.28 -6.93 8.53 -15.06 -0.13 -7.06 16 13 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 14 C 0.05 1.30 5.06 -17.43 -0.09 1.21 16 15 N -0.88 -24.74 13.97 55.49 0.78 -23.97 16 16 Si 0.84 20.10 26.19 -169.99 -4.45 15.65 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.26 -5.82 5.67 56.52 0.32 -5.49 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.16 3.10 5.00 -4.04 -0.02 3.08 16 21 C -0.14 -2.36 6.11 -27.88 -0.17 -2.53 16 22 C 0.48 7.59 8.33 36.01 0.30 7.89 16 23 O -0.52 -9.52 16.73 -18.75 -0.31 -9.84 16 24 O -0.52 -6.72 13.42 -39.26 -0.53 -7.25 16 25 C -0.06 -1.22 4.40 -28.18 -0.12 -1.34 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.69 7.89 -51.93 -0.41 0.28 16 28 H 0.07 1.06 8.08 -51.92 -0.42 0.64 16 29 H 0.09 1.25 7.80 -52.49 -0.41 0.84 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.03 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.06 1.25 4.18 -51.93 -0.22 1.03 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 40 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.40 3.21 9.10 45.56 0.41 3.63 16 43 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 44 H 0.09 1.93 7.37 -51.93 -0.38 1.55 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -28.65 350.63 -7.59 -36.24 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.96 Total: 5.85 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.06 Total: -8.80 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.44 Total: -37.14 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.84 Total: -17.09 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.45 Total: 15.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.65 -7.59 -36.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594109004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.552 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds