Wall clock time and date at job start Tue Mar 31 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29173 * 118.04264 * 2 1 4 4 C 1.50066 * 124.28304 * 179.54681 * 3 2 1 5 5 H 1.08999 * 109.35523 * 137.19127 * 4 3 2 6 6 C 1.52997 * 109.35808 * 256.91354 * 4 3 2 7 7 C 1.53021 * 110.03533 * 17.05239 * 4 3 2 8 8 C 1.53397 * 108.43954 * 310.63304 * 7 4 3 9 9 H 1.09002 * 109.64095 * 307.53510 * 8 7 4 10 10 C 1.53000 * 109.64099 * 187.11742 * 8 7 4 11 11 N 1.46509 * 109.46840 * 174.99591 * 10 8 7 12 12 C 1.36932 * 119.99863 * 270.00101 * 11 10 8 13 13 H 1.08007 * 119.99441 * 146.41181 * 12 11 10 14 14 C 1.38809 * 120.00388 * 326.40976 * 12 11 10 15 15 N 1.31614 * 119.99748 * 336.63477 * 14 12 11 16 16 Si 1.86802 * 120.00198 * 156.64181 * 14 12 11 17 17 H 1.48502 * 109.46951 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46939 * 119.99660 * 16 14 12 19 19 H 1.48500 * 109.46902 * 240.00040 * 16 14 12 20 20 C 1.46497 * 119.99470 * 90.00189 * 11 10 8 21 21 C 1.52994 * 109.47143 * 95.26249 * 20 11 10 22 22 C 1.50704 * 109.47247 * 179.97438 * 21 20 11 23 23 O 1.20824 * 120.00160 * 0.02562 * 22 21 20 24 24 O 1.34226 * 120.00017 * 179.97438 * 22 21 20 25 25 C 1.50066 * 117.96238 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46903 * 270.05633 * 1 2 3 27 27 H 1.09003 * 109.47710 * 30.05499 * 1 2 3 28 28 H 1.09000 * 109.47188 * 150.05753 * 1 2 3 29 29 H 1.08004 * 117.75421 * 359.56630 * 3 2 1 30 30 H 1.09010 * 109.46558 * 180.27511 * 6 4 3 31 31 H 1.09002 * 109.47351 * 60.28144 * 6 4 3 32 32 H 1.09001 * 109.47489 * 300.27363 * 6 4 3 33 33 H 1.09009 * 109.64206 * 70.31338 * 7 4 3 34 34 H 1.08996 * 109.64238 * 190.73227 * 7 4 3 35 35 H 1.09002 * 109.47307 * 294.99427 * 10 8 7 36 36 H 1.09000 * 109.46801 * 55.00385 * 10 8 7 37 37 H 0.96997 * 120.00189 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46871 * 215.26202 * 20 11 10 39 39 H 1.08999 * 109.47592 * 335.25561 * 20 11 10 40 40 H 1.09001 * 109.47199 * 299.99752 * 21 20 11 41 41 H 1.09004 * 109.47278 * 59.99939 * 21 20 11 42 42 H 0.96705 * 116.99767 * 180.02562 * 24 22 21 43 43 H 1.08994 * 109.36106 * 76.94342 * 25 2 1 44 44 H 1.09003 * 109.24625 * 317.28530 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1143 1.1401 0.0000 4 6 3.6060 1.3032 0.0098 5 1 3.8880 2.0899 -0.6900 6 6 4.0648 1.6885 1.4176 7 6 4.2795 -0.0076 -0.4022 8 6 3.6702 -1.1469 0.4247 9 1 3.7196 -0.8973 1.4846 10 6 4.4432 -2.4414 0.1647 11 7 3.9360 -3.4980 1.0438 12 6 4.4917 -3.6845 2.2813 13 1 3.8761 -4.0132 3.1057 14 6 5.8461 -3.4511 2.4763 15 7 6.6766 -3.5049 1.4567 16 14 6.4900 -3.0609 4.1859 17 1 5.3617 -3.0598 5.1515 18 1 7.4842 -4.0884 4.5868 19 1 7.1356 -1.7236 4.1783 20 6 2.8344 -4.3550 0.5987 21 6 3.4009 -5.6416 -0.0049 22 6 2.2676 -6.5235 -0.4622 23 8 1.1241 -6.1600 -0.3203 24 8 2.5286 -7.7123 -1.0281 25 6 2.2106 -1.3255 0.0006 26 1 -0.3633 0.0010 1.0277 27 1 -0.3634 0.8895 -0.5147 28 1 -0.3633 -0.8905 -0.5129 29 1 1.5072 2.0333 -0.0072 30 1 5.1478 1.8122 1.4256 31 1 3.7837 0.9029 2.1191 32 1 3.5899 2.6247 1.7111 33 1 4.1059 -0.1912 -1.4626 34 1 5.3508 0.0553 -0.2118 35 1 4.3123 -2.7402 -0.8754 36 1 5.5021 -2.2789 0.3656 37 1 7.6229 -3.3414 1.5929 38 1 2.1994 -4.6018 1.4497 39 1 2.2459 -3.8293 -0.1532 40 1 4.0358 -5.3949 -0.8559 41 1 3.9893 -6.1674 0.7471 42 1 1.7690 -8.2426 -1.3057 43 1 2.1749 -1.7540 -1.0009 44 1 1.7113 -1.9971 0.6990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594109007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:16 Heat of formation + Delta-G solvation = -86.125115 kcal Electronic energy + Delta-G solvation = -23229.579098 eV Core-core repulsion = 19953.603134 eV Total energy + Delta-G solvation = -3275.975964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.78543 -38.92359 -36.11721 -35.56248 -33.16195 -31.99901 -31.84680 -29.26196 -26.62073 -26.17912 -25.35734 -24.72344 -21.95915 -20.93928 -20.19214 -19.49227 -17.71592 -16.83038 -16.60798 -15.94919 -15.53405 -15.09831 -14.75179 -14.22309 -14.00002 -13.52821 -13.40440 -13.29940 -12.91732 -12.73072 -12.36068 -12.17363 -12.14917 -12.01939 -11.62322 -11.33345 -11.26653 -11.13739 -10.96725 -10.88458 -10.79197 -10.43768 -10.37056 -10.20432 -10.11060 -9.91082 -9.63799 -9.44722 -9.37009 -8.52610 -8.36885 -6.67699 -5.82493 -3.36753 2.63677 2.66332 3.33295 3.43388 3.45495 3.54892 4.46572 5.02499 5.18173 5.24962 5.39324 5.45348 5.55876 5.65937 5.69012 5.76683 5.78799 5.87162 5.96883 6.06394 6.10393 6.11333 6.15513 6.20554 6.27459 6.34443 6.42134 6.45052 6.53067 6.62567 6.70091 6.72781 6.78914 6.86106 6.94434 7.01087 7.17759 7.36100 7.45339 7.72547 7.81081 8.29864 8.46596 9.14762 9.77727 10.33390 11.16346 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.007428 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.475265 B = 3768.785081 C = 5797.498668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.165 4.165 4 C -0.055 4.055 5 H 0.064 0.936 6 C -0.141 4.141 7 C -0.108 4.108 8 C -0.102 4.102 9 H 0.073 0.927 10 C 0.147 3.853 11 N -0.578 5.578 12 C -0.258 4.258 13 H 0.063 0.937 14 C 0.012 3.988 15 N -0.884 5.884 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.288 1.288 20 C 0.158 3.842 21 C -0.132 4.132 22 C 0.478 3.522 23 O -0.529 6.529 24 O -0.525 6.525 25 C -0.073 4.073 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.103 0.897 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.397 0.603 43 H 0.061 0.939 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.748 3.801 -4.950 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.115 4.115 3 C -0.183 4.183 4 C -0.074 4.074 5 H 0.083 0.917 6 C -0.198 4.198 7 C -0.146 4.146 8 C -0.122 4.122 9 H 0.092 0.908 10 C 0.021 3.979 11 N -0.297 5.297 12 C -0.388 4.388 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.218 1.218 19 H -0.214 1.214 20 C 0.030 3.970 21 C -0.173 4.173 22 C 0.321 3.679 23 O -0.418 6.418 24 O -0.336 6.336 25 C -0.110 4.110 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.254 0.746 43 H 0.080 0.920 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.544 4.173 -4.773 9.111 hybrid contribution -0.133 -0.188 0.621 0.663 sum -6.677 3.985 -4.151 8.814 Atomic orbital electron populations 1.20946 0.93452 1.01673 1.01646 1.21037 0.95133 0.95988 0.99325 1.21689 0.95766 0.96611 1.04230 1.19935 0.92467 0.97965 0.97009 0.91724 1.21807 1.00491 1.00854 0.96651 1.21649 0.99531 0.94082 0.99337 1.21843 0.93710 0.96794 0.99866 0.90821 1.21113 1.00889 0.85100 0.90823 1.43950 1.38185 1.31547 1.15969 1.19113 0.90541 1.43132 0.85972 0.91924 1.25035 0.95859 1.01053 0.96827 1.69971 1.02498 1.50241 1.30001 0.86390 0.78691 0.77915 0.84799 1.20116 1.21761 1.21410 1.20882 0.90964 0.88007 0.97101 1.22462 0.95023 0.96748 1.03032 1.24475 0.91484 0.79340 0.72565 1.90648 1.24351 1.73379 1.53395 1.84669 1.43778 1.31987 1.73161 1.20517 0.96292 0.93335 1.00837 0.91919 0.92704 0.92121 0.89140 0.92809 0.91931 0.93581 0.92767 0.91892 0.96093 0.88008 0.93567 0.93403 0.93131 0.88613 0.87578 0.74586 0.92042 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.87 36.01 0.36 -1.21 16 2 C -0.11 -1.76 5.83 -100.87 -0.59 -2.35 16 3 C -0.16 -2.42 8.59 -35.83 -0.31 -2.73 16 4 C -0.06 -0.82 3.13 -92.07 -0.29 -1.10 16 5 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -2.06 8.98 37.16 0.33 -1.72 16 7 C -0.11 -1.79 4.74 -26.51 -0.13 -1.92 16 8 C -0.10 -1.92 2.40 -90.39 -0.22 -2.14 16 9 H 0.07 1.57 6.44 -51.93 -0.33 1.23 16 10 C 0.15 3.19 4.76 -4.04 -0.02 3.17 16 11 N -0.58 -13.24 2.34 -173.24 -0.41 -13.65 16 12 C -0.26 -6.59 9.48 -15.06 -0.14 -6.74 16 13 H 0.06 1.63 7.93 -52.48 -0.42 1.22 16 14 C 0.01 0.32 4.94 -17.43 -0.09 0.24 16 15 N -0.88 -23.81 11.31 55.49 0.63 -23.19 16 16 Si 0.89 20.81 29.61 -169.99 -5.03 15.78 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.16 3.21 4.05 -4.05 -0.02 3.20 16 21 C -0.13 -2.47 6.11 -27.88 -0.17 -2.64 16 22 C 0.48 8.13 8.33 36.01 0.30 8.43 16 23 O -0.53 -10.11 16.74 -18.75 -0.31 -10.42 16 24 O -0.52 -7.31 13.42 -39.25 -0.53 -7.84 16 25 C -0.07 -1.26 3.73 -28.17 -0.11 -1.37 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.09 1.19 7.79 -52.48 -0.41 0.79 16 30 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.06 1.03 6.57 -51.93 -0.34 0.69 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.87 8.12 -51.92 -0.42 0.44 16 34 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 36 H 0.10 2.53 5.30 -51.93 -0.28 2.26 16 37 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 40 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 42 H 0.40 3.58 9.10 45.56 0.41 3.99 16 43 H 0.06 1.05 7.86 -51.93 -0.41 0.65 16 44 H 0.07 1.37 6.93 -51.93 -0.36 1.01 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -28.18 349.24 -8.10 -36.28 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.63 Total: 6.66 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.08 Total: -8.87 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.22 Total: -36.84 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.84 Total: -18.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.18 -8.10 -36.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594109007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.850 kcal (2) G-P(sol) polarization free energy of solvation -28.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds