Wall clock time and date at job start Tue Mar 31 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.29259 * 117.82213 * 2 1 4 4 C 1.50069 * 124.02050 * 180.60171 * 3 2 1 5 5 C 1.53021 * 110.14617 * 342.73486 * 4 3 2 6 6 C 1.53393 * 108.43959 * 49.43442 * 5 4 3 7 7 H 1.09004 * 109.81504 * 52.35576 * 6 5 4 8 8 C 1.53002 * 109.63909 * 172.87899 * 6 5 4 9 9 C 1.50073 * 117.96477 * 179.87359 * 2 1 3 10 10 H 1.08999 * 109.35455 * 282.91922 * 9 2 1 11 11 C 1.52998 * 109.35413 * 42.63963 * 9 2 1 12 12 N 1.46495 * 109.47303 * 66.80552 * 11 9 2 13 13 C 1.36935 * 120.00047 * 94.57523 * 12 11 9 14 14 H 1.08001 * 120.00481 * 216.01611 * 13 12 11 15 15 C 1.38816 * 120.00159 * 36.02345 * 13 12 11 16 16 N 1.31625 * 119.99559 * 23.12673 * 15 13 12 17 17 Si 1.86800 * 120.00317 * 203.13489 * 15 13 12 18 18 H 1.48495 * 109.47104 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47258 * 119.99669 * 17 15 13 20 20 H 1.48506 * 109.46545 * 239.99496 * 17 15 13 21 21 C 1.46499 * 120.00318 * 274.85923 * 12 11 9 22 22 C 1.53003 * 109.46841 * 269.92887 * 21 12 11 23 23 C 1.50702 * 109.47169 * 179.97438 * 22 21 12 24 24 O 1.20826 * 119.99614 * 359.97438 * 23 22 21 25 25 O 1.34226 * 119.99875 * 179.97438 * 23 22 21 26 26 H 1.09002 * 109.46925 * 267.53789 * 1 2 3 27 27 H 1.08994 * 109.46923 * 27.53470 * 1 2 3 28 28 H 1.09001 * 109.47243 * 147.53818 * 1 2 3 29 29 H 1.08003 * 118.01330 * 0.44715 * 3 2 1 30 30 H 1.08998 * 109.35835 * 222.52808 * 4 3 2 31 31 H 1.09002 * 109.35766 * 102.94257 * 4 3 2 32 32 H 1.08997 * 109.64203 * 289.75056 * 5 4 3 33 33 H 1.09004 * 109.81238 * 169.22361 * 5 4 3 34 34 H 1.08999 * 109.46694 * 178.95021 * 8 6 5 35 35 H 1.09002 * 109.47198 * 298.94100 * 8 6 5 36 36 H 1.08995 * 109.47332 * 58.94748 * 8 6 5 37 37 H 1.09001 * 109.47111 * 306.80654 * 11 9 2 38 38 H 1.09000 * 109.47389 * 186.80614 * 11 9 2 39 39 H 0.97002 * 119.99442 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.46986 * 29.92308 * 21 12 11 41 41 H 1.09004 * 109.47463 * 149.92958 * 21 12 11 42 42 H 1.09000 * 109.46858 * 299.99499 * 22 21 12 43 43 H 1.08997 * 109.47657 * 59.99612 * 22 21 12 44 44 H 0.96701 * 116.99627 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1102 1.1432 0.0000 4 6 3.6021 1.3052 -0.0131 5 6 4.2781 -0.0038 0.4006 6 6 3.6693 -1.1456 -0.4231 7 1 3.7136 -0.9002 -1.4842 8 6 4.4447 -2.4384 -0.1615 9 6 2.2107 -1.3255 0.0029 10 1 2.1770 -1.7502 1.0062 11 6 1.5106 -2.2734 -0.9728 12 7 1.6888 -1.7840 -2.3420 13 6 2.7154 -2.2621 -3.1118 14 1 3.2257 -1.6048 -3.8003 15 6 3.1002 -3.5918 -3.0075 16 7 2.2509 -4.4889 -2.5532 17 14 4.8233 -4.1079 -3.5116 18 1 5.5772 -2.9195 -3.9854 19 1 5.5221 -4.7054 -2.3455 20 1 4.7400 -5.1092 -4.6051 21 6 0.7726 -0.7784 -2.8856 22 6 -0.4076 -1.4773 -3.5636 23 6 -1.3505 -0.4429 -4.1223 24 8 -1.1040 0.7327 -3.9911 25 8 -2.4640 -0.8275 -4.7655 26 1 -0.3633 -0.0441 1.0267 27 1 -0.3633 0.9112 -0.4751 28 1 -0.3634 -0.8671 -0.5516 29 1 1.5038 2.0368 0.0074 30 1 3.8859 2.0942 0.6833 31 1 3.9271 1.5781 -1.0171 32 1 4.1064 -0.1854 1.4616 33 1 5.3492 0.0566 0.2078 34 1 3.9984 -3.2518 -0.7337 35 1 5.4831 -2.3073 -0.4660 36 1 4.4050 -2.6773 0.9012 37 1 0.4470 -2.3162 -0.7378 38 1 1.9426 -3.2702 -0.8842 39 1 2.5199 -5.4180 -2.4800 40 1 0.4050 -0.1468 -2.0768 41 1 1.2992 -0.1639 -3.6158 42 1 -0.0400 -2.1088 -4.3724 43 1 -0.9343 -2.0918 -2.8335 44 1 -3.0382 -0.1279 -5.1060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594113628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:13 Heat of formation + Delta-G solvation = -72.360926 kcal Electronic energy + Delta-G solvation = -24236.473673 eV Core-core repulsion = 20961.094569 eV Total energy + Delta-G solvation = -3275.379104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.80068 -39.00905 -35.90749 -35.32890 -33.31043 -31.82808 -31.57678 -29.45167 -27.24072 -25.90233 -24.71882 -24.26918 -22.11716 -20.71888 -19.92317 -19.39909 -17.69989 -17.23410 -16.49934 -15.87045 -15.54906 -14.79956 -14.67186 -14.26510 -13.94297 -13.52724 -13.30215 -13.07178 -12.73594 -12.70493 -12.44191 -11.96907 -11.74750 -11.74067 -11.47287 -11.23455 -11.16517 -11.11200 -11.03176 -10.73693 -10.59506 -10.35209 -10.19077 -10.11614 -10.00384 -9.77084 -9.53601 -9.33471 -9.20966 -8.44004 -8.08566 -6.62059 -5.84834 -3.36295 2.67818 2.92176 3.31565 3.42646 3.44457 3.56145 4.45888 5.21920 5.28117 5.39722 5.47724 5.58970 5.72422 5.79046 5.87756 5.88355 5.95917 5.98881 6.13163 6.15107 6.20228 6.28258 6.37374 6.43738 6.48935 6.53874 6.57120 6.58723 6.65087 6.71720 6.79505 6.81244 6.85183 7.08542 7.12016 7.25535 7.30689 7.53902 7.67907 7.73367 7.79817 8.31286 8.47284 9.15287 9.77657 10.36038 11.15734 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.008860 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.573038 B = 3159.515334 C = 4757.343321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.184 4.184 4 C -0.078 4.078 5 C -0.116 4.116 6 C -0.075 4.075 7 H 0.103 0.897 8 C -0.145 4.145 9 C -0.069 4.069 10 H 0.059 0.941 11 C 0.151 3.849 12 N -0.570 5.570 13 C -0.253 4.253 14 H 0.061 0.939 15 C 0.021 3.979 16 N -0.884 5.884 17 Si 0.880 3.120 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.293 1.293 21 C 0.147 3.853 22 C -0.132 4.132 23 C 0.477 3.523 24 O -0.527 6.527 25 O -0.526 6.526 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.099 0.901 39 H 0.254 0.746 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 6.161 3.798 7.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.084 4.084 3 C -0.202 4.202 4 C -0.115 4.115 5 C -0.154 4.154 6 C -0.093 4.093 7 H 0.122 0.878 8 C -0.202 4.202 9 C -0.089 4.089 10 H 0.077 0.923 11 C 0.025 3.975 12 N -0.289 5.289 13 C -0.383 4.383 14 H 0.078 0.922 15 C -0.179 4.179 16 N -0.526 5.526 17 Si 0.709 3.291 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.220 1.220 21 C 0.020 3.980 22 C -0.173 4.173 23 C 0.320 3.680 24 O -0.416 6.416 25 O -0.337 6.337 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -2.768 5.984 4.015 7.719 hybrid contribution 0.364 0.108 -0.544 0.664 sum -2.404 6.091 3.471 7.411 Atomic orbital electron populations 1.21209 0.93916 1.02556 1.00944 1.20826 0.94859 0.95359 0.97395 1.21611 0.95744 0.96677 1.06190 1.20269 0.93203 0.97328 1.00660 1.21723 0.98688 0.95531 0.99460 1.21103 0.92992 0.93184 1.02023 0.87845 1.21867 0.99029 0.99499 0.99815 1.20709 0.95455 0.93657 0.99097 0.92328 1.21040 0.95876 0.98076 0.82475 1.43781 1.29748 1.46435 1.08973 1.19009 1.07455 0.91711 1.20078 0.92176 1.24983 0.97596 0.95545 0.99804 1.70036 1.32600 1.01067 1.48923 0.86633 0.85957 0.78540 0.77964 1.19947 1.21096 1.21982 1.21090 0.88542 0.91630 0.96731 1.22479 0.95336 0.97142 1.02336 1.24496 0.79449 0.90415 0.73626 1.90652 1.74211 1.20531 1.56189 1.84671 1.35257 1.44932 1.68805 0.92746 0.92610 0.90730 0.89299 0.92795 0.91696 0.93125 0.92882 0.90365 0.94392 0.94735 0.95488 0.88351 0.93591 0.91815 0.93430 0.87673 0.88858 0.74641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.92 36.00 0.29 -1.77 16 2 C -0.08 -1.46 4.15 -100.89 -0.42 -1.88 16 3 C -0.18 -3.05 9.36 -35.85 -0.34 -3.39 16 4 C -0.08 -1.21 6.12 -28.18 -0.17 -1.38 16 5 C -0.12 -1.89 5.31 -26.52 -0.14 -2.03 16 6 C -0.07 -1.41 1.80 -90.41 -0.16 -1.57 16 7 H 0.10 2.25 5.76 -51.93 -0.30 1.95 16 8 C -0.14 -2.78 8.98 37.16 0.33 -2.44 16 9 C -0.07 -1.28 2.13 -92.07 -0.20 -1.48 16 10 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 11 C 0.15 3.18 4.57 -4.05 -0.02 3.16 16 12 N -0.57 -12.55 1.91 -173.24 -0.33 -12.89 16 13 C -0.25 -6.19 7.35 -15.06 -0.11 -6.30 16 14 H 0.06 1.54 7.93 -52.49 -0.42 1.12 16 15 C 0.02 0.52 3.34 -17.43 -0.06 0.47 16 16 N -0.88 -23.02 11.54 55.49 0.64 -22.38 16 17 Si 0.88 20.33 28.69 -169.99 -4.88 15.46 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.15 2.98 4.34 -4.04 -0.02 2.96 16 22 C -0.13 -2.45 6.14 -27.88 -0.17 -2.62 16 23 C 0.48 8.12 8.33 36.01 0.30 8.42 16 24 O -0.53 -10.11 16.74 -18.75 -0.31 -10.42 16 25 O -0.53 -7.34 13.42 -39.25 -0.53 -7.87 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.86 7.65 -51.93 -0.40 0.47 16 28 H 0.07 1.25 4.68 -51.93 -0.24 1.00 16 29 H 0.09 1.39 7.77 -52.48 -0.41 0.98 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.71 4.24 -51.93 -0.22 1.49 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.55 5.94 -51.93 -0.31 0.24 16 38 H 0.10 2.35 4.48 -51.93 -0.23 2.11 16 39 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 40 H 0.06 1.24 3.65 -51.93 -0.19 1.05 16 41 H 0.05 1.03 8.00 -51.93 -0.42 0.61 16 42 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 43 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 44 H 0.40 3.62 9.10 45.56 0.41 4.03 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -26.93 332.34 -7.36 -34.29 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.07 Total: 8.66 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.88 Total: -9.85 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.31 Total: -35.26 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.84 Total: -18.29 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.88 Total: 15.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.93 -7.36 -34.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594113628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.071 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds