Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29253 * 117.82103 * 2 1 4 4 C 1.50067 * 124.02132 * 179.44511 * 3 2 1 5 5 C 1.53019 * 110.14941 * 17.25621 * 4 3 2 6 6 C 1.53395 * 108.43851 * 310.57007 * 5 4 3 7 7 H 1.09006 * 109.64459 * 187.11476 * 6 5 4 8 8 C 1.53001 * 109.64086 * 307.74722 * 6 5 4 9 9 C 1.50072 * 117.96258 * 180.15955 * 2 1 3 10 10 H 1.09004 * 109.35414 * 77.04121 * 9 2 1 11 11 C 1.52997 * 109.36089 * 317.31851 * 9 2 1 12 12 N 1.46491 * 109.47587 * 174.40770 * 11 9 2 13 13 C 1.36937 * 120.00046 * 289.66832 * 12 11 9 14 14 H 1.07999 * 120.00775 * 176.37111 * 13 12 11 15 15 C 1.38815 * 119.99660 * 356.37466 * 13 12 11 16 16 N 1.31618 * 119.99990 * 347.65144 * 15 13 12 17 17 Si 1.86805 * 120.00182 * 167.93095 * 15 13 12 18 18 H 1.48497 * 109.47110 * 269.72470 * 17 15 13 19 19 H 1.48502 * 109.46995 * 29.72037 * 17 15 13 20 20 H 1.48501 * 109.47155 * 149.71869 * 17 15 13 21 21 C 1.46501 * 120.00298 * 109.66557 * 12 11 9 22 22 C 1.53006 * 109.47125 * 263.62257 * 21 12 11 23 23 C 1.50700 * 109.46805 * 186.17617 * 22 21 12 24 24 O 1.20828 * 120.00265 * 359.97438 * 23 22 21 25 25 O 1.34224 * 119.99547 * 180.02562 * 23 22 21 26 26 H 1.08997 * 109.47482 * 273.90911 * 1 2 3 27 27 H 1.08997 * 109.46949 * 33.91155 * 1 2 3 28 28 H 1.09006 * 109.47054 * 153.90761 * 1 2 3 29 29 H 1.08003 * 118.01721 * 359.59073 * 3 2 1 30 30 H 1.09010 * 109.35542 * 257.05586 * 4 3 2 31 31 H 1.08995 * 109.36165 * 137.46877 * 4 3 2 32 32 H 1.08997 * 109.64949 * 190.88236 * 5 4 3 33 33 H 1.09004 * 109.81767 * 70.35115 * 5 4 3 34 34 H 1.09003 * 109.46822 * 187.60764 * 8 6 5 35 35 H 1.09000 * 109.46847 * 307.60071 * 8 6 5 36 36 H 1.09001 * 109.47203 * 67.60817 * 8 6 5 37 37 H 1.09007 * 109.47206 * 54.40029 * 11 9 2 38 38 H 1.09004 * 109.47180 * 294.40916 * 11 9 2 39 39 H 0.97008 * 119.99885 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47058 * 23.62434 * 21 12 11 41 41 H 1.09005 * 109.47144 * 143.62241 * 21 12 11 42 42 H 1.08998 * 109.46783 * 306.17328 * 22 21 12 43 43 H 1.08998 * 109.47075 * 66.17606 * 22 21 12 44 44 H 0.96704 * 117.00128 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1102 1.1431 0.0000 4 6 3.6020 1.3052 0.0120 5 6 4.2778 -0.0036 -0.4024 6 6 3.6696 -1.1457 0.4214 7 1 4.2218 -2.0668 0.2345 8 6 3.7324 -0.7964 1.9097 9 6 2.2106 -1.3255 -0.0037 10 1 2.1763 -1.7499 -1.0071 11 6 1.5112 -2.2738 0.9722 12 7 2.1113 -3.6065 0.8730 13 6 1.9061 -4.3682 -0.2463 14 1 2.3956 -5.3258 -0.3451 15 6 1.0688 -3.9095 -1.2540 16 7 0.2871 -2.8726 -1.0391 17 14 1.0457 -4.7687 -2.9126 18 1 2.0490 -4.1407 -3.8093 19 1 1.3750 -6.2052 -2.7305 20 1 -0.3053 -4.6432 -3.5163 21 6 2.9310 -4.1244 1.9713 22 6 4.4090 -3.8692 1.6687 23 6 5.2590 -4.5337 2.7209 24 8 4.7363 -5.1479 3.6206 25 8 6.5967 -4.4424 2.6590 26 1 -0.3634 0.0701 1.0252 27 1 -0.3633 0.8528 -0.5733 28 1 -0.3633 -0.9230 -0.4520 29 1 1.5037 2.0368 -0.0068 30 1 3.9277 1.5778 1.0160 31 1 3.8854 2.0945 -0.6843 32 1 5.3484 0.0590 -0.2075 33 1 4.1087 -0.1869 -1.4635 34 1 3.4259 -1.6606 2.4989 35 1 4.7526 -0.5191 2.1750 36 1 3.0634 0.0393 2.1152 37 1 0.4513 -2.3331 0.7246 38 1 1.6262 -1.8983 1.9891 39 1 -0.2983 -2.5523 -1.7432 40 1 2.6574 -3.6199 2.8980 41 1 2.7615 -5.1959 2.0772 42 1 4.6556 -4.2799 0.6897 43 1 4.6004 -2.7962 1.6714 44 1 7.0997 -4.8848 3.3565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594113629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = -53.802801 kcal Electronic energy + Delta-G solvation = -24322.675832 eV Core-core repulsion = 21048.101469 eV Total energy + Delta-G solvation = -3274.574363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94074 -39.10434 -36.09404 -35.55908 -33.13786 -31.88250 -31.00517 -29.61308 -26.69660 -25.89618 -25.26286 -24.35888 -22.03677 -20.62793 -20.26057 -19.48089 -17.80032 -16.73704 -16.18814 -16.06376 -15.68466 -15.08062 -14.71253 -14.22228 -13.91432 -13.47749 -13.29988 -12.99884 -12.83814 -12.36244 -12.27753 -12.09751 -11.72160 -11.67979 -11.35077 -11.24929 -11.18608 -10.93087 -10.86281 -10.77827 -10.54889 -10.40165 -10.19655 -10.16601 -9.85235 -9.78340 -9.52881 -9.44568 -9.08704 -8.44715 -7.87369 -6.89552 -5.59900 -3.16688 2.57948 3.11107 3.35225 3.42416 3.44465 3.46899 4.46490 5.29871 5.37085 5.42155 5.47655 5.55144 5.66245 5.70168 5.89568 5.96153 5.97051 6.09927 6.12013 6.15642 6.22911 6.28690 6.38959 6.47477 6.47929 6.55131 6.58131 6.61755 6.69782 6.75687 6.78554 6.83949 6.99216 7.12496 7.16276 7.28885 7.54059 7.63137 7.74173 7.97398 8.10476 8.21921 8.44986 9.26447 9.84482 10.25156 11.24828 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.008875 C = 0.005953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.012900 B = 3154.165419 C = 4702.596999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.221 4.221 4 C -0.074 4.074 5 C -0.115 4.115 6 C -0.095 4.095 7 H 0.077 0.923 8 C -0.150 4.150 9 C -0.047 4.047 10 H 0.104 0.896 11 C 0.162 3.838 12 N -0.594 5.594 13 C -0.239 4.239 14 H 0.074 0.926 15 C -0.003 4.003 16 N -0.904 5.904 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.283 1.283 20 H -0.292 1.292 21 C 0.165 3.835 22 C -0.158 4.158 23 C 0.478 3.522 24 O -0.525 6.525 25 O -0.525 6.525 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.009 0.991 39 H 0.250 0.750 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.934 4.750 3.700 9.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 C -0.239 4.239 4 C -0.111 4.111 5 C -0.152 4.152 6 C -0.113 4.113 7 H 0.095 0.905 8 C -0.207 4.207 9 C -0.067 4.067 10 H 0.121 0.879 11 C 0.038 3.962 12 N -0.314 5.314 13 C -0.368 4.368 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.553 5.553 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.209 1.209 20 H -0.219 1.219 21 C 0.037 3.963 22 C -0.199 4.199 23 C 0.321 3.679 24 O -0.414 6.414 25 O -0.336 6.336 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.379 4.821 3.510 8.732 hybrid contribution 0.585 -0.477 -0.559 0.939 sum 6.964 4.344 2.952 8.722 Atomic orbital electron populations 1.21254 0.93299 1.04137 1.00723 1.21063 0.95946 0.94988 0.93963 1.21551 0.95270 0.96859 1.10204 1.20235 0.93657 0.97116 1.00050 1.21640 0.98087 0.95470 1.00020 1.21429 0.98780 0.97292 0.93796 0.90506 1.22039 0.99906 1.01567 0.97208 1.20678 0.90508 0.91791 1.03696 0.87877 1.21572 1.01335 0.81284 0.92012 1.44190 1.55107 1.15248 1.16872 1.19314 1.22560 1.00607 0.94317 0.90840 1.24666 0.98505 0.98113 0.98553 1.69864 1.26738 1.27201 1.31447 0.86226 0.76885 0.78847 0.84486 1.21756 1.20874 1.21888 1.20570 0.86151 0.98681 0.90903 1.23050 0.97276 1.02930 0.96597 1.24321 0.80399 0.77146 0.86052 1.90666 1.73848 1.40695 1.36203 1.84643 1.21325 1.72749 1.54918 0.93147 0.94567 0.86798 0.89675 0.92293 0.93081 0.93240 0.92409 0.92323 0.94394 0.92514 0.86329 0.97247 0.93862 0.93315 0.92987 0.87826 0.86546 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.79 36.00 0.32 -2.23 16 2 C -0.06 -1.12 4.96 -100.89 -0.50 -1.62 16 3 C -0.22 -3.79 8.70 -35.85 -0.31 -4.10 16 4 C -0.07 -1.13 5.49 -28.18 -0.15 -1.29 16 5 C -0.11 -1.86 5.64 -26.52 -0.15 -2.01 16 6 C -0.09 -1.68 2.21 -90.40 -0.20 -1.88 16 7 H 0.08 1.44 5.34 -51.93 -0.28 1.16 16 8 C -0.15 -2.44 6.01 37.16 0.22 -2.22 16 9 C -0.05 -0.95 1.48 -92.06 -0.14 -1.08 16 10 H 0.10 2.48 5.88 -51.93 -0.31 2.18 16 11 C 0.16 3.51 3.85 -4.05 -0.02 3.50 16 12 N -0.59 -13.24 2.29 -173.23 -0.40 -13.64 16 13 C -0.24 -5.85 9.58 -15.06 -0.14 -6.00 16 14 H 0.07 1.81 7.86 -52.49 -0.41 1.39 16 15 C 0.00 -0.08 4.41 -17.43 -0.08 -0.15 16 16 N -0.90 -22.32 6.34 55.49 0.35 -21.97 16 17 Si 0.90 20.54 29.57 -169.99 -5.03 15.51 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.17 3.26 4.36 -4.04 -0.02 3.24 16 22 C -0.16 -2.70 4.57 -27.88 -0.13 -2.82 16 23 C 0.48 7.69 8.33 36.01 0.30 7.99 16 24 O -0.53 -9.78 16.65 -18.75 -0.31 -10.09 16 25 O -0.53 -6.79 13.42 -39.24 -0.53 -7.32 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.61 7.96 -51.93 -0.41 0.19 16 28 H 0.11 2.37 4.77 -51.93 -0.25 2.12 16 29 H 0.09 1.38 7.84 -52.48 -0.41 0.97 16 30 H 0.06 0.86 7.10 -51.92 -0.37 0.49 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 34 H 0.06 0.99 4.23 -51.93 -0.22 0.77 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.94 5.99 -51.93 -0.31 0.63 16 37 H 0.12 2.89 4.41 -51.93 -0.23 2.66 16 38 H 0.01 0.19 5.74 -51.93 -0.30 -0.10 16 39 H 0.25 6.15 7.97 -40.82 -0.33 5.83 16 40 H 0.05 0.94 7.16 -51.93 -0.37 0.57 16 41 H 0.05 1.08 7.86 -51.93 -0.41 0.67 16 42 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 43 H 0.12 1.92 3.27 -51.93 -0.17 1.75 16 44 H 0.40 3.29 9.10 45.56 0.41 3.71 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -26.20 319.29 -7.78 -33.98 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.69 Total: 9.38 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.99 Total: -10.67 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.84 Total: -17.41 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.20 -7.78 -33.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594113629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.822 kcal (2) G-P(sol) polarization free energy of solvation -26.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds