Wall clock time and date at job start Tue Mar 31 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.29448 * 117.95796 * 2 1 4 4 C 1.50071 * 124.07492 * 180.46909 * 3 2 1 5 5 C 1.53419 * 110.27812 * 342.94844 * 4 3 2 6 6 C 1.53394 * 108.23886 * 49.22146 * 5 4 3 7 7 H 1.09007 * 109.63967 * 172.92283 * 6 5 4 8 8 C 1.53001 * 109.64364 * 52.50714 * 6 5 4 9 9 C 1.50064 * 117.96499 * 180.02562 * 2 1 3 10 10 H 1.08998 * 109.24829 * 282.98083 * 9 2 1 11 11 C 1.52997 * 109.35548 * 42.64450 * 9 2 1 12 12 N 1.46505 * 109.46671 * 257.77424 * 11 9 2 13 13 C 1.36939 * 120.00073 * 98.26354 * 12 11 9 14 14 H 1.07996 * 119.99475 * 226.21336 * 13 12 11 15 15 C 1.38805 * 120.00019 * 46.20822 * 13 12 11 16 16 N 1.31622 * 120.00158 * 10.88606 * 15 13 12 17 17 Si 1.86799 * 120.00097 * 190.88476 * 15 13 12 18 18 H 1.48504 * 109.46987 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47382 * 119.99619 * 17 15 13 20 20 H 1.48500 * 109.47258 * 240.00066 * 17 15 13 21 21 C 1.46507 * 120.00061 * 278.25564 * 12 11 9 22 22 C 1.53000 * 109.46626 * 96.02195 * 21 12 11 23 23 C 1.50698 * 109.46808 * 179.97438 * 22 21 12 24 24 O 1.20822 * 119.99971 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00199 * 180.02562 * 23 22 21 26 26 H 1.08998 * 109.47502 * 266.69310 * 1 2 3 27 27 H 1.08993 * 109.47483 * 26.69516 * 1 2 3 28 28 H 1.09005 * 109.46653 * 146.69533 * 1 2 3 29 29 H 1.08005 * 117.96056 * 0.48760 * 3 2 1 30 30 H 1.08994 * 109.35853 * 103.09385 * 4 3 2 31 31 H 1.08999 * 109.35605 * 222.82429 * 4 3 2 32 32 H 1.08996 * 109.52821 * 289.72117 * 5 4 3 33 33 H 1.09007 * 109.94990 * 168.96799 * 5 4 3 34 34 H 1.09009 * 109.46705 * 300.42020 * 8 6 5 35 35 H 1.09003 * 109.47244 * 60.41518 * 8 6 5 36 36 H 1.08991 * 109.47154 * 180.42083 * 8 6 5 37 37 H 1.08998 * 109.47462 * 17.77151 * 11 9 2 38 38 H 1.08999 * 109.47150 * 137.77619 * 11 9 2 39 39 H 0.97000 * 120.00079 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.47125 * 216.02485 * 21 12 11 41 41 H 1.08998 * 109.46630 * 336.02756 * 21 12 11 42 42 H 1.09003 * 109.47618 * 300.00056 * 22 21 12 43 43 H 1.08996 * 109.47398 * 60.00406 * 22 21 12 44 44 H 0.96698 * 117.00474 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3033 -0.0102 5 6 4.2843 -0.0096 0.4019 6 6 3.6703 -1.1470 -0.4240 7 1 4.2202 -2.0704 -0.2417 8 6 3.7348 -0.7953 -1.9117 9 6 2.2107 -1.3254 -0.0006 10 1 2.1751 -1.7516 1.0020 11 6 1.5107 -2.2708 -0.9789 12 7 0.6719 -3.2121 -0.2327 13 6 -0.6714 -2.9792 -0.1046 14 1 -1.1480 -3.0833 0.8589 15 6 -1.4205 -2.6094 -1.2131 16 7 -0.8964 -2.6888 -2.4179 17 14 -3.1724 -1.9988 -0.9952 18 1 -3.5225 -2.0043 0.4480 19 1 -3.2848 -0.6169 -1.5271 20 1 -4.1028 -2.8905 -1.7331 21 6 1.2704 -4.4026 0.3763 22 6 1.5860 -4.1193 1.8464 23 6 2.2010 -5.3441 2.4730 24 8 2.3699 -6.3410 1.8116 25 8 2.5611 -5.3276 3.7660 26 1 -0.3634 -0.0593 1.0259 27 1 -0.3634 0.9180 -0.4616 28 1 -0.3633 -0.8589 -0.5643 29 1 1.5087 2.0379 0.0081 30 1 3.9332 1.5773 -1.0131 31 1 3.8899 2.0891 0.6899 32 1 4.1111 -0.1920 1.4624 33 1 5.3553 0.0479 0.2070 34 1 3.1842 0.1283 -2.0908 35 1 4.7750 -0.6616 -2.2086 36 1 3.2911 -1.6019 -2.4952 37 1 0.8884 -1.6918 -1.6613 38 1 2.2582 -2.8229 -1.5485 39 1 -1.4197 -2.4300 -3.1925 40 1 0.5709 -5.2358 0.3089 41 1 2.1902 -4.6567 -0.1504 42 1 2.2855 -3.2861 1.9139 43 1 0.6663 -3.8652 2.3731 44 1 2.9518 -6.1367 4.1234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594113630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:18 Heat of formation + Delta-G solvation = -74.902198 kcal Electronic energy + Delta-G solvation = -23871.981745 eV Core-core repulsion = 20596.492444 eV Total energy + Delta-G solvation = -3275.489302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88482 -39.20663 -36.10525 -35.56939 -32.88748 -32.06168 -31.54431 -29.44340 -27.02536 -26.13856 -24.78463 -24.61148 -22.23408 -20.51314 -20.17308 -19.91108 -17.79520 -16.85991 -16.44136 -15.90073 -15.59067 -15.10020 -14.72369 -14.53777 -13.98751 -13.90771 -13.14585 -12.89563 -12.75985 -12.58685 -12.35979 -12.34527 -11.93411 -11.84051 -11.40928 -11.28454 -11.20667 -11.09397 -11.05969 -10.76286 -10.64825 -10.49517 -10.36829 -10.24573 -10.10220 -9.96634 -9.80439 -9.47438 -9.22064 -8.47624 -7.98131 -6.52473 -5.88014 -3.57537 2.58009 2.95574 3.27973 3.37145 3.37958 3.44990 4.37872 5.14449 5.18226 5.21977 5.30647 5.46569 5.58974 5.69609 5.75726 5.79643 5.84529 5.92394 5.96104 6.03702 6.12053 6.17497 6.25570 6.30921 6.39901 6.52895 6.55487 6.58514 6.63572 6.69534 6.74947 6.76105 6.80350 6.88672 7.05447 7.08895 7.23663 7.48491 7.70573 7.75600 7.87087 8.21984 8.50551 9.13938 9.66898 10.33157 11.11670 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.009171 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.918328 B = 3052.451850 C = 5032.321823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.065 4.065 3 C -0.210 4.210 4 C -0.077 4.077 5 C -0.114 4.114 6 C -0.086 4.086 7 H 0.063 0.937 8 C -0.149 4.149 9 C -0.078 4.078 10 H 0.077 0.923 11 C 0.160 3.840 12 N -0.580 5.580 13 C -0.263 4.263 14 H 0.058 0.942 15 C 0.025 3.975 16 N -0.884 5.884 17 Si 0.886 3.114 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.287 1.287 21 C 0.160 3.840 22 C -0.136 4.136 23 C 0.478 3.522 24 O -0.522 6.522 25 O -0.526 6.526 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.029 0.971 39 H 0.257 0.743 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 3.487 6.264 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.065 4.065 3 C -0.228 4.228 4 C -0.114 4.114 5 C -0.151 4.151 6 C -0.104 4.104 7 H 0.081 0.919 8 C -0.206 4.206 9 C -0.098 4.098 10 H 0.095 0.905 11 C 0.034 3.966 12 N -0.300 5.300 13 C -0.393 4.393 14 H 0.076 0.924 15 C -0.177 4.177 16 N -0.524 5.524 17 Si 0.714 3.286 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.213 1.213 21 C 0.033 3.967 22 C -0.176 4.176 23 C 0.321 3.679 24 O -0.410 6.410 25 O -0.338 6.338 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.938 3.616 5.696 10.418 hybrid contribution -0.695 -0.007 0.475 0.841 sum 7.243 3.608 6.171 10.176 Atomic orbital electron populations 1.21640 0.92451 1.04498 1.02573 1.21012 0.96248 0.94252 0.95030 1.21661 0.95222 0.97027 1.08893 1.20354 0.93513 0.97018 1.00518 1.21703 0.98432 0.95393 0.99611 1.21213 0.96473 0.97357 0.95402 0.91871 1.21928 1.00265 1.02541 0.95857 1.21102 0.92560 0.94509 1.01673 0.90545 1.21101 0.92633 0.90558 0.92302 1.43791 1.04479 1.20437 1.61245 1.18928 0.83744 1.44071 0.92535 0.92418 1.25412 0.97209 0.99749 0.95288 1.69962 1.36688 1.48446 0.97324 0.86520 0.85248 0.78548 0.78273 1.19686 1.21013 1.21316 1.20638 0.97452 0.90875 0.87753 1.22481 1.01597 0.92523 1.01001 1.24215 0.74163 0.90679 0.78849 1.90678 1.51976 1.35393 1.62934 1.84630 1.74953 1.45295 1.28878 0.92720 0.94574 0.85305 0.89160 0.91800 0.92661 0.92370 0.92660 0.92178 0.93991 0.91894 0.88586 0.95261 0.93277 0.92720 0.93683 0.88536 0.88056 0.74337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 9.23 36.01 0.33 -2.82 16 2 C -0.07 -1.21 4.94 -100.94 -0.50 -1.71 16 3 C -0.21 -3.46 8.71 -35.90 -0.31 -3.78 16 4 C -0.08 -1.08 5.48 -27.97 -0.15 -1.23 16 5 C -0.11 -1.57 5.69 -26.31 -0.15 -1.72 16 6 C -0.09 -1.34 2.72 -90.41 -0.25 -1.59 16 7 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 8 C -0.15 -2.30 8.11 37.16 0.30 -2.00 16 9 C -0.08 -1.42 2.37 -92.07 -0.22 -1.64 16 10 H 0.08 1.43 5.42 -51.93 -0.28 1.14 16 11 C 0.16 3.42 3.62 -4.04 -0.01 3.40 16 12 N -0.58 -13.11 2.30 -173.24 -0.40 -13.51 16 13 C -0.26 -6.46 7.81 -15.06 -0.12 -6.58 16 14 H 0.06 1.43 7.85 -52.49 -0.41 1.02 16 15 C 0.02 0.63 3.39 -17.43 -0.06 0.57 16 16 N -0.88 -23.68 11.61 55.49 0.64 -23.04 16 17 Si 0.89 20.25 29.27 -169.99 -4.97 15.28 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.16 3.27 4.98 -4.04 -0.02 3.25 16 22 C -0.14 -2.29 5.80 -27.88 -0.16 -2.46 16 23 C 0.48 7.68 8.33 36.00 0.30 7.98 16 24 O -0.52 -9.83 16.74 -18.75 -0.31 -10.15 16 25 O -0.53 -6.72 13.42 -39.26 -0.53 -7.25 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.68 7.83 -51.93 -0.41 0.28 16 28 H 0.13 2.94 1.90 -51.93 -0.10 2.84 16 29 H 0.09 1.44 7.77 -52.48 -0.41 1.04 16 30 H 0.06 0.86 6.92 -51.93 -0.36 0.50 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.97 5.69 -51.92 -0.30 0.67 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 1.06 6.28 -51.93 -0.33 0.73 16 37 H 0.10 2.33 4.52 -51.93 -0.23 2.10 16 38 H 0.03 0.63 6.27 -51.93 -0.33 0.31 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.05 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.04 0.92 7.88 -51.93 -0.41 0.51 16 42 H 0.10 1.55 6.06 -51.93 -0.31 1.24 16 43 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 44 H 0.40 3.26 9.10 45.56 0.41 3.67 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -27.76 332.67 -7.54 -35.30 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.97 Total: 8.66 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.02 Total: -10.32 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.25 Total: -36.54 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.84 Total: -17.40 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.97 Total: 15.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.76 -7.54 -35.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594113630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.598 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds